CN181778

Overview
NameCN181778
Unique NameCN181778
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4257 contig Csv1_Contig4257:37..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181778 vs. ExPASy Swiss-Prot
Match: EIF3K_ORYSJ (Eukaryotic translation initiation factor 3 subunit K OS=Oryza sativa subsp. japonica GN=TIF3K1 PE=2 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 3.091e-82
Identity = 151/191 (79.06%), Postives = 172/191 (90.05%), Query Frame = 2
Query:  122 SFTVEQLVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPN 694
            S+TVE+LVAVNPYNPDIL DLE +VN+QV +QTY+LDANL LLRLYQFEPER+S QIV+RILIKALMAMP PDFSLCLFLIPE VQME+QFKTLIVLSHYLET RFR FWDEA+K+RNI++ VPGFEQAIQS+AIHVLSLTYQK+PR VLAEAIN++GL+LDKFLEH  AN GW++E   + SQLIVLP N
Sbjct:    9 SYTVEELVAVNPYNPDILNDLEGFVNDQVSNQTYNLDANLSLLRLYQFEPERLSVQIVSRILIKALMAMPGPDFSLCLFLIPEHVQMEEQFKTLIVLSHYLETARFRQFWDEASKNRNILDVVPGFEQAIQSYAIHVLSLTYQKVPRPVLAEAINIEGLALDKFLEHHIANSGWVIE-KGARSQLIVLPRN 198          
BLAST of CN181778 vs. ExPASy Swiss-Prot
Match: EIF3K_ARATH (Eukaryotic translation initiation factor 3 subunit K OS=Arabidopsis thaliana GN=TIF3K1 PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 7.126e-79
Identity = 145/191 (75.92%), Postives = 170/191 (89.01%), Query Frame = 2
Query:  122 SFTVEQLVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPN 694
            S+TVEQLVA+NP+NP+ILPDLENYVN  V SQTYSL+ NLCLLRLYQFEPERM+T IVARIL+KALMAMP PDFSLCLFLIPERVQME+QFK+LIVLSHYLETGRF+ FWDEAAK+R+I+EAVPGFEQAIQ++A H+LSL+YQK+PR+VLAEA+N+ G SLDKF+E Q  N GWI+E +  +   IVLP N
Sbjct:   13 SYTVEQLVALNPFNPEILPDLENYVN--VTSQTYSLEVNLCLLRLYQFEPERMNTHIVARILVKALMAMPTPDFSLCLFLIPERVQMEEQFKSLIVLSHYLETGRFQQFWDEAAKNRHILEAVPGFEQAIQAYASHLLSLSYQKVPRSVLAEAVNMDGASLDKFIEQQVTNSGWIVEKEGGS---IVLPQN 198          
BLAST of CN181778 vs. ExPASy Swiss-Prot
Match: EIF3K_MOUSE (Eukaryotic translation initiation factor 3 subunit K OS=Mus musculus GN=Eif3k PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.330e-27
Identity = 63/168 (37.50%), Postives = 95/168 (56.55%), Query Frame = 2
Query:  140 LVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGW 643
            L  ++ YNP+ L  LE YV  Q     Y L+ANL +L+LYQF P    T + A+IL+KAL  +P  DF+LC  +I +  Q E   + ++ L   LET  F+ FW    ++ +++E + GFE +++ F  HV+ +TYQ I R +LAE +   G   D  L+   +  GW
Sbjct:   15 LKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAFFQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEML---GDLTDNQLKVWMSKYGW 179          
BLAST of CN181778 vs. ExPASy Swiss-Prot
Match: EIF3K_BOVIN (Eukaryotic translation initiation factor 3 subunit K OS=Bos taurus GN=EIF3K PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.330e-27
Identity = 63/168 (37.50%), Postives = 95/168 (56.55%), Query Frame = 2
Query:  140 LVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGW 643
            L  ++ YNP+ L  LE YV  Q     Y L+ANL +L+LYQF P    T + A+IL+KAL  +P  DF+LC  +I +  Q E   + ++ L   LET  F+ FW    ++ +++E + GFE +++ F  HV+ +TYQ I R +LAE +   G   D  L+   +  GW
Sbjct:   15 LKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAFFQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEML---GDLTDSQLKVWMSKYGW 179          
BLAST of CN181778 vs. ExPASy Swiss-Prot
Match: EIF3K_HUMAN (Eukaryotic translation initiation factor 3 subunit K OS=Homo sapiens GN=EIF3K PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.267e-27
Identity = 63/168 (37.50%), Postives = 95/168 (56.55%), Query Frame = 2
Query:  140 LVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGW 643
            L  ++ YNP+ L  LE YV  Q     Y L+ANL +L+LYQF P    T + A+IL+KAL  +P  DF+LC  +I +  Q E   + ++ L   LET  F+ FW    ++ +++E + GFE +++ F  HV+ +TYQ I R +LAE +   G   D  L+   +  GW
Sbjct:   15 LKGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAFFQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEML---GDLSDSQLKVWMSKYGW 179          
BLAST of CN181778 vs. ExPASy Swiss-Prot
Match: EIF3K_NEMVE (Eukaryotic translation initiation factor 3 subunit K OS=Nematostella vectensis GN=v1g170558 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.080e-26
Identity = 65/179 (36.31%), Postives = 107/179 (59.78%), Query Frame = 2
Query:  128 TVEQLV-AVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAI-NLKGLSLDKFLEHQKANCGWILEGD 658
            TV QL+  ++ YNP+ L  LE+YV+ QV    Y LDANL +L+LYQF P    T ++++IL+KALM +P  DF +C  +I + +Q +   K +I+L+  LET  F   W    +  ++V+ V GF  AI+++  +V+ +TYQ I  ++ +E +  L+G  L  +++ +    GW+   D
Sbjct:    8 TVSQLLKGIDRYNPENLKVLEHYVHLQVHENAYDLDANLAVLKLYQFNPAYSQTSVISQILLKALMNLPNADFIMCRCVIDDAIQQDLTIKKVILLAERLETCAFTSAWQFIKEEASLVDGVTGFHDAIRNYITYVIGVTYQTIEESLASELLGGLQGAQLQDWIKAK----GWMSSDD 182          
BLAST of CN181778 vs. ExPASy Swiss-Prot
Match: EIF3K_XENTR (Eukaryotic translation initiation factor 3 subunit K OS=Xenopus tropicalis GN=eif3k PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.405e-26
Identity = 57/148 (38.51%), Postives = 88/148 (59.46%), Query Frame = 2
Query:  140 LVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAI 583
            L  ++ YNP+ L  LE YV  Q     Y L+ANL +L+LYQF P    T + A+IL+KAL  +P  DF+LC  +I +  Q E   + ++ L   LET  F+ FW    ++ ++++ + GFE +++ F  HV+ +TYQ I R +LAE +
Sbjct:   15 LRGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAFFQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQSFWQALDENLDLIDGITGFEDSVRKFICHVVGITYQHIDRWLLAEML 162          
BLAST of CN181778 vs. ExPASy Swiss-Prot
Match: EIF3K_DANRE (Eukaryotic translation initiation factor 3 subunit K OS=Danio rerio GN=eif3k PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.405e-26
Identity = 61/168 (36.31%), Postives = 97/168 (57.74%), Query Frame = 2
Query:  140 LVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGW 643
            L  ++ YNP+ L  LE YV+ Q     Y L+ANL +L+LYQF      T + A+IL+KAL  +P  DF+LC  +I +  Q E   + ++ L + LET  F+ FW    ++R++++ + GFE++++ F  HV+ +TYQ I   +LAE +   G  LD  ++      GW
Sbjct:   16 LRGIDRYNPENLATLERYVDTQARENAYDLEANLAVLKLYQFNLAYFQTTVTAQILLKALTNLPHTDFTLCKCMIDQTHQEERPIRQILYLGNLLETCHFQSFWASLEENRDLIDGITGFEESVRKFICHVVGITYQNIEYRLLAEML---GDPLDTQVKVWMNKYGW 180          
BLAST of CN181778 vs. ExPASy Swiss-Prot
Match: EIF3K_XENLA (Eukaryotic translation initiation factor 3 subunit K OS=Xenopus laevis GN=eif3k PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.359e-26
Identity = 56/148 (37.84%), Postives = 88/148 (59.46%), Query Frame = 2
Query:  140 LVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAI 583
            L  ++ YNP+ L  LE YV  Q     Y L+ANL +L+LYQF P    T + A++L+KAL  +P  DF+LC  +I +  Q +   + ++ L   LET  F+ FW    ++ ++++ V GFE +++ F  HV+ +TYQ I R +LAE +
Sbjct:   15 LRGIDRYNPENLATLERYVETQAKENAYDLEANLAVLKLYQFNPAFFQTTVTAQVLLKALTNLPHTDFTLCKCMIDQAHQEDRPIRQILYLGDLLETCHFQSFWQALDENLDLIDGVTGFEDSVRKFICHVVGITYQHIDRWLLAEML 162          
BLAST of CN181778 vs. ExPASy Swiss-Prot
Match: EIF3K_DROER (Eukaryotic translation initiation factor 3 subunit K OS=Drosophila erecta GN=GG22131 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.320e-24
Identity = 64/174 (36.78%), Postives = 94/174 (54.02%), Query Frame = 2
Query:  134 EQLVAVNPYNPDILPDLENYVNEQVLSQTYSLDANLCLLRLYQFEPERMSTQIVARILIKALMAMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEG 655
            E L  +  YNPD L  LE YV +Q  + TY L+ANL +L+LYQF P  ++  I   IL+K+L ++P  DF +   L+  +   ++  +T+I L+  LE   F  FW  A  +RN+   + GF  +I+ F  HV+S T+Q I + +L E   L G   D  LE      GW  +G
Sbjct:   17 EMLGCIERYNPDHLKTLEAYVQDQAKNNTYDLEANLAVLKLYQFNPHMLNIDITYTILLKSLTSLPHTDFVMAKCLLLPQQMKDENVQTIIDLADILERADFTLFWQRAEVNRNMFRHIAGFHDSIRKFVSHVVSTTFQTIRKDLLKE---LLGGIEDSTLESWIKRNGWKHQG 187          
The following BLAST results are available for this feature:
BLAST of CN181778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
EIF3K_ORYSJ3.091e-8279.06Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_ARATH7.126e-7975.92Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_MOUSE6.330e-2737.50Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_BOVIN6.330e-2737.50Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_HUMAN8.267e-2737.50Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_NEMVE1.080e-2636.31Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_XENTR2.405e-2638.51Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_DANRE2.405e-2636.31Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_XENLA5.359e-2637.84Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_DROER1.320e-2436.78Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181778 ID=CN181778; Name=CN181778; organism=Citrus sinensis; type=EST; length=694bp
GTATCGTTCTCCCTCGCTTAAGCTAAGTTGGGGTTTCTGAGAAATTCTAA
GTTTATCGATCAAACGACACAGTGCGGAGAAAATGGGAAGAGAGGCTCAA
CAGCAGCAACAGCAACAGGTTTCATTTACAGTGGAGCAGCTTGTAGCCGT
CAATCCCTACAATCCCGACATCCTTCCCGATCTCGAAAACTACGTTAACG
AGCAGGTCTTGTCACAAACATATAGTCTGGATGCAAATCTTTGCCTTCTT
CGTCTTTATCAGTTTGAACCAGAAAGAATGAGTACCCAAATTGTTGCCCG
CATTTTAATTAAGGCTCTTATGGCAATGCCAGCTCCAGATTTCAGTCTCT
GTCTCTTTTTGATCCCAGAAAGAGTGCAAATGGAGGATCAATTCAAGACG
CTGATTGTCCTCTCTCACTACTTGGAGACAGGAAGGTTCCGCCATTTCTG
GGATGAAGCAGCTAAGCATCGTAACATAGTTGAAGCCGTGCCAGGTTTTG
AGCAAGCAATTCAGTCCTTTGCAATTCATGTCCTTTCATTGACATATCAA
AAGATTCCAAGGACTGTGCTTGCCGAGGCTATCAATCTTAAAGGTCTATC
TCTGGACAAATTCCTTGAACACCAGAAGGCAAATTGTGGCTGGATTCTTG
AAGGAGATCAAAGTACGAGCCAATTGATTGTCCTGCCGCCTAAT
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