CN181777

Overview
NameCN181777
Unique NameCN181777
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4257 contig Csv1_Contig4257:410..1130. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN181777 vs. ExPASy Swiss-Prot
Match: EIF3K_ORYSJ (Eukaryotic translation initiation factor 3 subunit K OS=Oryza sativa subsp. japonica GN=TIF3K1 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.425e-55
Identity = 102/134 (76.12%), Postives = 120/134 (89.55%), Query Frame = -1 
Query:  320 VQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRIFPIL 721
            VQME+QFKTLIVLSHYLET RFR FWDEA+K+RNI++ VPGFEQAIQS+AIHVLSLTYQK+PR VLAEAIN++GL+LDKFLEH  AN GW++E   + SQLIVLP NEFNHPELKKN A+++P EH+TRIFP+L
Sbjct:   93 VQMEEQFKTLIVLSHYLETARFRQFWDEASKNRNILDVVPGFEQAIQSYAIHVLSLTYQKVPRPVLAEAINIEGLALDKFLEHHIANSGWVIE-KGARSQLIVLPRNEFNHPELKKNTAETVPFEHVTRIFPVL 225
[Close]
BLAST of CN181777 vs. ExPASy Swiss-Prot
Match: EIF3K_ARATH (Eukaryotic translation initiation factor 3 subunit K OS=Arabidopsis thaliana GN=TIF3K1 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.297e-51
Identity = 96/135 (71.11%), Postives = 117/135 (86.67%), Query Frame = -1 
Query:  317 VQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRIFPILG 721
            VQME+QFK+LIVLSHYLETGRF+ FWDEAAK+R+I+EAVPGFEQAIQ++A H+LSL+YQK+PR+VLAEA+N+ G SLDKF+E Q  N GWI+E +  +   IVLP NEFNHPELKKN  +++PLEHI RIFPILG
Sbjct:   95 VQMEEQFKSLIVLSHYLETGRFQQFWDEAAKNRHILEAVPGFEQAIQAYASHLLSLSYQKVPRSVLAEAVNMDGASLDKFIEQQVTNSGWIVEKEGGS---IVLPQNEFNHPELKKNTGENVPLEHIARIFPILG 226
The following BLAST results are available for this feature:
BLAST of CN181777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
EIF3K_ORYSJ3.425e-5576.12Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_ARATH2.297e-5171.11Eukaryotic translation initiation factor 3 subunit... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H11_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181777 ID=CN181777; Name=CN181777; organism=Citrus sinensis; type=EST; length=721bp
CAATTTTATTCCACAAATTATAACTTTTCCTCGTGTGGTATTGCAATCTA
TCGACCTAACTGGAAATTGAAGTTCACTGACTGAATTTTTACGTCTCCAA
CATGTCAGCTTCTTCAAACAAGCGTCATTGGTAAGAGAAAATAAATGCCA
ATAATAACATTGTGTCTCATCAATTCCTCCAAGCCACTTGGGCTATGTTT
TCAACATAAACACAAAAAGAGATTACAGCAGTCCCCAAAATTCACTGCAA
GAGTGCTATAGCATCTGGTTAAAACAAATGAAAATTTACCAAATGCCAGG
ATTTGAACTTCAATCAACCGAGAATGGGAAATATGCGGGTAATGTGTTCT
AACGGGATGCTATCAGCAACATTCTTCTTCAGCTCGGGATGATTAAATTC
ATTAGGCGGCAGGACAATCAATTGGCTCGTACTTTGATCTCCTTCAAGAA
TCCAGCCACAATTTGCCTTCTGGTGTTCAAGGAATTTGTCCAGAGATAGA
CCTTTAAGATTGATAGCCTCGGCAAGCACAGTCCTTGGAATCTTTTGATA
TGTCAATGAAAGGACATGAATTGCAAAGGACTGAATTGCTTGCTCAAAAC
CTGGCACGGCTTCAACTATGTTACGATGCTTAGCTGCTTCATCCCAGAAA
TGGCGGAACCTTCCTGTCTCCAAGTAGTGAGAGAGGACAATCAGCGTCTT
GAATTGATCCTCCATTTGCAC
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