CN181776

Overview
NameCN181776
Unique NameCN181776
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length497
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2628 contig Csv1_Contig2628:324..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181776 vs. ExPASy Swiss-Prot
Match: CRT_CLOAB (3-hydroxybutyryl-CoA dehydratase OS=Clostridium acetobutylicum GN=crt PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.707e-18
Identity = 52/144 (36.11%), Postives = 80/144 (55.56%), Query Frame = 1
Query:    7 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGHALALEKERAHDYYNGMTKEQFKKMQEFIAAR 438
            G EIA++CD+ +A+  A+F       GI P +G +Q+LSR++G   A+++   A  I A++  R GLVN VVE  EL+  A  +A  ++ N    V   K  IN G++ D+  ALA E E   + ++  T++Q   M  FI  R
Sbjct:  112 GCEIAMSCDIRIASSNARFGQPEVGLGITPGFGGTQRLSRLVGMGMAKQLIFTAQNIKADEALRIGLVNKVVEPSELMNTAKEIANKIVSNAPVAVKLSKQAINRGMQCDIDTALAFESEAFGECFS--TEDQKDAMTAFIEKR 253          
BLAST of CN181776 vs. ExPASy Swiss-Prot
Match: ECHA8_MYCTU (Probable enoyl-CoA hydratase echA8 OS=Mycobacterium tuberculosis GN=echA8 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.042e-14
Identity = 47/145 (32.41%), Postives = 74/145 (51.03%), Query Frame = 1
Query:    7 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGHALALEKERAHDYYNGMTKEQFKKMQEFIAARS 441
            G E+A+ CDVL+AA  AKF     + G+ P  G SQ+L+R IG  +A ++ +    + A + ER GLV+ VV   +LL +A A A  + + +       K  +N   +  L   L  E+   H  +   T++Q + M  FI  R+
Sbjct:  109 GCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSASAARMAKEAVNRAFESSLSEGLLYERRLFHSAF--ATEDQSEGMAAFIEKRA 251          
BLAST of CN181776 vs. ExPASy Swiss-Prot
Match: ECHA8_MYCLE (Probable enoyl-CoA hydratase echA8 OS=Mycobacterium leprae GN=echA8 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.042e-14
Identity = 48/145 (33.10%), Postives = 76/145 (52.41%), Query Frame = 1
Query:    7 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGHALALEKERAHDYYNGMTKEQFKKMQEFIAARS 441
            G E+A+ CD+L+AA  AKF     + G+ P  G SQ+L+R IG  +A ++ +    I A + ER GLV+ VV   +LL +A AVA  + + ++      K  +N   +  L   L  E+   H  +  +T +Q + M  FI  R+
Sbjct:  109 GCELAMMCDLLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTIDAAEAERSGLVSRVVLADDLLPEAKAVATTISQMSRSATRMAKEAVNRSFESTLAEGLLHERRLFHSTF--VTDDQSEGMAAFIEKRA 251          
BLAST of CN181776 vs. ExPASy Swiss-Prot
Match: ECHA8_MYCBO (Probable enoyl-CoA hydratase echA8 OS=Mycobacterium bovis GN=echA8 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.042e-14
Identity = 47/145 (32.41%), Postives = 74/145 (51.03%), Query Frame = 1
Query:    7 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGHALALEKERAHDYYNGMTKEQFKKMQEFIAARS 441
            G E+A+ CDVL+AA  AKF     + G+ P  G SQ+L+R IG  +A ++ +    + A + ER GLV+ VV   +LL +A A A  + + +       K  +N   +  L   L  E+   H  +   T++Q + M  FI  R+
Sbjct:  109 GCELAMMCDVLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTMDAAEAERSGLVSRVVPADDLLTEARATATTISQMSASAARMAKEAVNRAFESSLSEGLLYERRLFHSAF--ATEDQSEGMAAFIEKRA 251          
BLAST of CN181776 vs. ExPASy Swiss-Prot
Match: CRT_CLODI (3-hydroxybutyryl-CoA dehydratase (Fragment) OS=Clostridium difficile GN=crt PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.169e-14
Identity = 41/118 (34.75%), Postives = 68/118 (57.63%), Query Frame = 1
Query:    7 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGHALALE 360
            G E+A+ACD+ +A+  AKF       GI P +G +Q+L+R++G  +A+E+      I A++ E+ GLVN VVE   L+++   +A+ + KN Q  V   K  I  G + D+   + +E
Sbjct:   17 GCELAMACDIRIASAKAKFGQPEVTLGITPGYGGTQRLTRLVGMAKAKELIFTGQVIKADEAEKIGLVNRVVEPDILIEEVEKLAKIIAKNAQLAVRYSKEAIQLGAQTDINTGIDIE 134          
BLAST of CN181776 vs. ExPASy Swiss-Prot
Match: ECHH_RHIME (Probable enoyl-CoA hydratase OS=Rhizobium meliloti GN=fadB1 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 6.752e-14
Identity = 44/147 (29.93%), Postives = 76/147 (51.70%), Query Frame = 1
Query:    7 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGHALALEKERAHDYYNGMTKEQFKKMQEFIAARSSK 447
            G E+A+ CD ++A++ AKF       G+ P  G SQ+L+R +G  +A ++ +    + A + ER GLV+ VV    LL++A   AE +   +    +  K  +N  L+L L   L  E+      +   T++Q + M  F+A R ++
Sbjct:  109 GCELAMMCDFIIASETAKFGQPEITLGVIPGMGGSQRLTRAVGKAKAMDLILTGRMMDAAEAERSGLVSRVVAPDRLLEEALGAAEKIASFSLPAAMMAKEAVNRSLELTLAEGLRFERRLFQSLF--ATEDQKEGMAAFVAKRKAE 253          
BLAST of CN181776 vs. ExPASy Swiss-Prot
Match: ECHM_DICDI (Probable enoyl-CoA hydratase, mitochondrial OS=Dictyostelium discoideum GN=echs1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.818e-14
Identity = 45/145 (31.03%), Postives = 75/145 (51.72%), Query Frame = 1
Query:    7 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGHALALEKERAHDYYNGMTKEQFKKMQEFIAARS 441
            G E+A+ CD+++A + A F     + G  P  G +Q+L R IG ++A E+ +    +TA + E+ GLV+ VV   ELL +A  +AE +   +Q  V   K  +N   +L L   +  E+   H  +   T +Q + M  F+  R+
Sbjct:  129 GCELAMMCDIIIAGEKAVFGQPEIKLGTIPGCGGTQRLIRAIGKSKAMELVLTGNNLTAVEAEKAGLVSKVVPVEELLTEATKMAEKIASYSQLTVAMAKEAVNASYELTLQEGIRFERRMFHSTFG--THDQKEGMNAFVEKRT 271          
BLAST of CN181776 vs. ExPASy Swiss-Prot
Match: YNGF_BACSU (Putative enoyl-CoA hydratase/isomerase yngF OS=Bacillus subtilis GN=yngF PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.964e-13
Identity = 43/120 (35.83%), Postives = 64/120 (53.33%), Query Frame = 1
Query:    7 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGHALALEKE 366
            G E+ALACD+ +A + A          I P  G +Q+L R+IG  +A+E       +TA + +  GLV HV    +L+ KA  +A A+  N    V + K  IN GL+ DL   LA+E++
Sbjct:  112 GLELALACDLRIATEAAVLGLPETGLAIIPGAGGTQRLPRLIGRGKAKEFIYTGRRVTAHEAKEIGLVEHVTAPCDLMPKAEELAAAISANGPIAVRQAKFAINKGLETDLATGLAIEQK 231          
BLAST of CN181776 vs. ExPASy Swiss-Prot
Match: AUHM_MOUSE (Methylglutaconyl-CoA hydratase, mitochondrial OS=Mus musculus GN=Auh PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.408e-11
Identity = 40/123 (32.52%), Postives = 67/123 (54.47%), Query Frame = 1
Query:    7 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGE----LLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGHALALEK 363
            G E+ALACD+ VAA  AK      +  I P  G +Q+L R IG + A+E+  +A  +  ++ +  GL++HV+E+ +      +KA  +A   +      +   K  IN G+++DL   LA+E+
Sbjct:  162 GLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEE 284          
BLAST of CN181776 vs. ExPASy Swiss-Prot
Match: CAID_SALTI (Carnitinyl-CoA dehydratase OS=Salmonella typhi GN=caiD PE=3 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.839e-11
Identity = 33/91 (36.26%), Postives = 54/91 (59.34%), Query Frame = 1
Query:    7 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 279
            GFE+ALA D +V A+ A F    A+ GI P  G   +L +++ P    E+ M    ++AE+  RWG+VN VV + EL++ A  +A+ ++ +
Sbjct:  109 GFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGIVNRVVSQSELMESARELAQQLVNS 199          
The following BLAST results are available for this feature:
BLAST of CN181776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
CRT_CLOAB7.707e-1836.113-hydroxybutyryl-CoA dehydratase OS=Clostridium ac... [more]
ECHA8_MYCTU1.042e-1432.41Probable enoyl-CoA hydratase echA8 OS=Mycobacteriu... [more]
ECHA8_MYCLE1.042e-1433.10Probable enoyl-CoA hydratase echA8 OS=Mycobacteriu... [more]
ECHA8_MYCBO1.042e-1432.41Probable enoyl-CoA hydratase echA8 OS=Mycobacteriu... [more]
CRT_CLODI5.169e-1434.753-hydroxybutyryl-CoA dehydratase (Fragment) OS=Clo... [more]
ECHH_RHIME6.752e-1429.93Probable enoyl-CoA hydratase OS=Rhizobium meliloti... [more]
ECHM_DICDI8.818e-1431.03Probable enoyl-CoA hydratase, mitochondrial OS=Dic... [more]
YNGF_BACSU1.964e-1335.83Putative enoyl-CoA hydratase/isomerase yngF OS=Bac... [more]
AUHM_MOUSE1.408e-1132.52Methylglutaconyl-CoA hydratase, mitochondrial OS=M... [more]
CAID_SALTI1.839e-1136.26Carnitinyl-CoA dehydratase OS=Salmonella typhi GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181776 ID=CN181776; Name=CN181776; organism=Citrus sinensis; type=EST; length=497bp
GAGGCCGGGTTCGAAATCGCGTTGGCTTGTGACGTTTTGGTTGCCGCTAA
AGGCGCAAAATTTATTGACACCCATGCTCGATTTGGGATATTTCCTTCAT
GGGGTCTGTCTCAGAAGCTTTCGCGCATTATTGGACCAAATAGAGCTCGT
GAAGTATCCATGGCAGCTACCCCTATAACTGCTGAGCAAGGTGAGAGGTG
GGGCCTGGTGAACCATGTTGTTGAAGAAGGTGAATTGTTGAAGAAAGCGC
ACGCAGTTGCTGAAGCAATGATAAAGAACAATCAAGACTTGGTGTTGAGG
TATAAGGCAGTCATCAATGATGGTCTGAAGCTGGACTTGGGTCATGCTCT
TGCGCTTGAAAAGGAGCGGGCTCATGACTACTACAATGGAATGACGAAGG
AGCAGTTTAAGAAAATGCAGGAGTTTATAGCTGCTCGGAGTTCAAAGAAA
CCCTCTTCCAAGTTGTAAATTCAACAAATGATCAGCATGTCCTATAC
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