CN188714

Overview
NameCN188714
Unique NameCN188714
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2682 contig Csv1_Contig2682:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188714 vs. ExPASy Swiss-Prot
Match: SMU1_RAT (WD40 repeat-containing protein SMU1 OS=Rattus norvegicus GN=Smu1 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.093e-68
Identity = 117/183 (63.93%), Postives = 145/183 (79.23%), Query Frame = 3 
Query:    3 LRIHGLKSGKLLNYFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTPQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 551
            +RIHGLKSGK L  FRGHSS+VN+A FT DG  +++ASSD TVK+W++K+T+C  TFK      G D +VNSV L PKNP+H VVCN+++++ IM  QGQ+V+SFSSGKREGGDFV   +SP+GEWIYCVGED  LYCFS  +GKLE  + VHEKDVIG+ HHPH+NL+ATY ED  +KLWKP
Sbjct:  331 IRIHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKIWNMKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIATYSEDGLLKLWKP 513
[Close]
BLAST of CN188714 vs. ExPASy Swiss-Prot
Match: SMU1_MOUSE (WD40 repeat-containing protein SMU1 OS=Mus musculus GN=Smu1 PE=2 SV=2)

HSP 1 Score: 258.07 bits (658), Expect = 3.093e-68
Identity = 117/183 (63.93%), Postives = 145/183 (79.23%), Query Frame = 3 
Query:    3 LRIHGLKSGKLLNYFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTPQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 551
            +RIHGLKSGK L  FRGHSS+VN+A FT DG  +++ASSD TVK+W++K+T+C  TFK      G D +VNSV L PKNP+H VVCN+++++ IM  QGQ+V+SFSSGKREGGDFV   +SP+GEWIYCVGED  LYCFS  +GKLE  + VHEKDVIG+ HHPH+NL+ATY ED  +KLWKP
Sbjct:  331 IRIHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKIWNMKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIATYSEDGLLKLWKP 513
[Close]
BLAST of CN188714 vs. ExPASy Swiss-Prot
Match: SMU1_HUMAN (WD40 repeat-containing protein SMU1 OS=Homo sapiens GN=SMU1 PE=1 SV=2)

HSP 1 Score: 258.07 bits (658), Expect = 3.093e-68
Identity = 117/183 (63.93%), Postives = 145/183 (79.23%), Query Frame = 3 
Query:    3 LRIHGLKSGKLLNYFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTPQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 551
            +RIHGLKSGK L  FRGHSS+VN+A FT DG  +++ASSD TVK+W++K+T+C  TFK      G D +VNSV L PKNP+H VVCN+++++ IM  QGQ+V+SFSSGKREGGDFV   +SP+GEWIYCVGED  LYCFS  +GKLE  + VHEKDVIG+ HHPH+NL+ATY ED  +KLWKP
Sbjct:  331 IRIHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKIWNMKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIATYSEDGLLKLWKP 513
[Close]
BLAST of CN188714 vs. ExPASy Swiss-Prot
Match: SMU1_CRIGR (WD40 repeat-containing protein SMU1 OS=Cricetulus griseus GN=SMU1 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.093e-68
Identity = 117/183 (63.93%), Postives = 145/183 (79.23%), Query Frame = 3 
Query:    3 LRIHGLKSGKLLNYFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTPQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 551
            +RIHGLKSGK L  FRGHSS+VN+A FT DG  +++ASSD TVK+W++K+T+C  TFK      G D +VNSV L PKNP+H VVCN+++++ IM  QGQ+V+SFSSGKREGGDFV   +SP+GEWIYCVGED  LYCFS  +GKLE  + VHEKDVIG+ HHPH+NL+ATY ED  +KLWKP
Sbjct:  331 IRIHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKIWNMKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIATYSEDGLLKLWKP 513
[Close]
BLAST of CN188714 vs. ExPASy Swiss-Prot
Match: SMU1_CHICK (WD40 repeat-containing protein SMU1 OS=Gallus gallus GN=SMU1 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.093e-68
Identity = 118/183 (64.48%), Postives = 145/183 (79.23%), Query Frame = 3 
Query:    3 LRIHGLKSGKLLNYFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTPQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 551
            +RIHGLKSGK L  FRGHSS+VN+A FT DG  +++ASSD TVKVW++K+T+C  TFK      G D +VNSV L PKNP+H VVCN+++++ IM  QGQ+V+SFSSGKREGGDFV   +SP+GEWIYCVGED  LYCFS  +GKLE  + VHEKDVIG+ HHPH+NL+ATY ED  +KLWKP
Sbjct:  331 IRIHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKVWNVKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIATYSEDGLLKLWKP 513
[Close]
BLAST of CN188714 vs. ExPASy Swiss-Prot
Match: SMU1_BOVIN (WD40 repeat-containing protein SMU1 OS=Bos taurus GN=SMU1 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.093e-68
Identity = 117/183 (63.93%), Postives = 145/183 (79.23%), Query Frame = 3 
Query:    3 LRIHGLKSGKLLNYFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTPQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 551
            +RIHGLKSGK L  FRGHSS+VN+A FT DG  +++ASSD TVK+W++K+T+C  TFK      G D +VNSV L PKNP+H VVCN+++++ IM  QGQ+V+SFSSGKREGGDFV   +SP+GEWIYCVGED  LYCFS  +GKLE  + VHEKDVIG+ HHPH+NL+ATY ED  +KLWKP
Sbjct:  331 IRIHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKIWNMKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCALSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIATYSEDGLLKLWKP 513
[Close]
BLAST of CN188714 vs. ExPASy Swiss-Prot
Match: SMU1_XENLA (WD40 repeat-containing protein SMU1 OS=Xenopus laevis GN=smu1 PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 1.175e-67
Identity = 116/183 (63.39%), Postives = 144/183 (78.69%), Query Frame = 3 
Query:    3 LRIHGLKSGKLLNYFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTPQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 551
            +RIHGLKSGK L  FRGHSS+VN+A FT DG  +++ASSD TVK+W++K+T+C  TFK      G D +VNSV L PKNP+H VVCN+++++ IM  QGQ+V+SFSSGKREGGDFV   +SP+GEWIYCVGED  LYCFS  +GKLE  + VHEKDVIG+ HHPH+NL+ TY ED  +KLWKP
Sbjct:  331 IRIHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKIWNMKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIGTYSEDGLLKLWKP 513
[Close]
BLAST of CN188714 vs. ExPASy Swiss-Prot
Match: SMU1_XENTR (WD40 repeat-containing protein SMU1 OS=Xenopus tropicalis GN=smu1 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.535e-67
Identity = 115/183 (62.84%), Postives = 144/183 (78.69%), Query Frame = 3 
Query:    3 LRIHGLKSGKLLNYFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTPQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 551
            +R+HGLKSGK L  FRGHSS+VN+A FT DG  +++ASSD TVK+W++K+T+C  TFK      G D +VNSV L PKNP+H VVCN+++++ IM  QGQ+V+SFSSGKREGGDFV   +SP+GEWIYCVGED  LYCFS  +GKLE  + VHEKDVIG+ HHPH+NL+ TY ED  +KLWKP
Sbjct:  331 IRVHGLKSGKTLKEFRGHSSFVNEATFTQDGHYIISASSDGTVKIWNMKTTECSNTFKSLGSTAGTDITVNSVILLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIGTYSEDGLLKLWKP 513
[Close]
BLAST of CN188714 vs. ExPASy Swiss-Prot
Match: SMU1_DANRE (WD40 repeat-containing protein SMU1 OS=Danio rerio GN=smu1 PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.697e-66
Identity = 115/183 (62.84%), Postives = 142/183 (77.60%), Query Frame = 3 
Query:    3 LRIHGLKSGKLLNYFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTPQGQVVKSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWKP 551
            +RIHGLKSGK L  FRGHSS+VN+A  T DG   ++ASSD TVKVW++K+T+C  TFK      G D +VN+V L PKNP+H VVCN+++++ IM  QGQ+V+SFSSGKREGGDFV   +SP+GEWIYCVGED  LYCFS  +GKLE  + VHEKDVIG+ HHPH+NL+ TY ED  +KLWKP
Sbjct:  331 IRIHGLKSGKCLKEFRGHSSFVNEATLTPDGHHAISASSDGTVKVWNMKTTECTSTFKSLGTSAGTDITVNNVILLPKNPEHFVVCNRSNTVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDYVLYCFSTVTGKLERTLTVHEKDVIGIAHHPHQNLIGTYSEDGLLKLWKP 513
[Close]
BLAST of CN188714 vs. ExPASy Swiss-Prot
Match: SMU1_DICDI (WD40 repeat-containing protein smu1 OS=Dictyostelium discoideum GN=smu1 PE=3 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 6.494e-42
Identity = 83/183 (45.36%), Postives = 119/183 (65.03%), Query Frame = 3 
Query:    3 LRIHGLKSGKLLNYFRGHSSYVNDAIFTNDGSRVVTASSDCTVKVWDLKSTDCLQTFKPPPPLRGGDASVNSVHLFPKNPDHIVVCNKTSSIYIMTPQGQVV-KSFSSGKREGGDFVAACVSPKGEWIYCVGEDRNLYCFSHQSGKLEHLMKVHEKDVIGVTHHPHRNLLATYGEDCTMKLWK 548
            L+IHGLKSGK L  FRGH S+VND  F +D  RV++ SSD  +K+WD KS+DCLQT  P   +   D S+ S+ +  KNP+ ++VCN +S I I++ + Q + K+F+S       F+   +SP   ++Y V ED  LY F   SG L +  K+H+++VI ++HHP +NLLAT G DC +K+WK
Sbjct:  342 LKIHGLKSGKALKIFRGHQSFVNDCCFNHDEDRVISCSSDGKIKIWDAKSSDCLQTITPTSVVTVRDISIRSITILLKNPEFLLVCN-SSQISIVSMKSQTISKTFTS--ENSKTFLVCTLSPLQNYLYAVDEDNILYTFDFNSGSLLNKFKIHDQEVISISHHPTKNLLATTGSDCLLKIWK 521
The following BLAST results are available for this feature:
BLAST of CN188714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
SMU1_RAT3.093e-6863.93WD40 repeat-containing protein SMU1 OS=Rattus norv... [more]
SMU1_MOUSE3.093e-6863.93WD40 repeat-containing protein SMU1 OS=Mus musculu... [more]
SMU1_HUMAN3.093e-6863.93WD40 repeat-containing protein SMU1 OS=Homo sapien... [more]
SMU1_CRIGR3.093e-6863.93WD40 repeat-containing protein SMU1 OS=Cricetulus ... [more]
SMU1_CHICK3.093e-6864.48WD40 repeat-containing protein SMU1 OS=Gallus gall... [more]
SMU1_BOVIN3.093e-6863.93WD40 repeat-containing protein SMU1 OS=Bos taurus ... [more]
SMU1_XENLA1.175e-6763.39WD40 repeat-containing protein SMU1 OS=Xenopus lae... [more]
SMU1_XENTR1.535e-6762.84WD40 repeat-containing protein SMU1 OS=Xenopus tro... [more]
SMU1_DANRE1.697e-6662.84WD40 repeat-containing protein SMU1 OS=Danio rerio... [more]
SMU1_DICDI6.494e-4245.36WD40 repeat-containing protein smu1 OS=Dictyosteli... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006K05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006K05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188714 ID=CN188714; Name=CN188714; organism=Citrus sinensis; type=EST; length=671bp
CTTTAAGAATTCATGGACTAAAATCTGGGAAATTGTTGAACTATTTCCGA
GGTCATTCGTCTTACGTAAATGATGCCATATTCACAAATGATGGCAGCCG
TGTCGTTACTGCCTCAAGTGATTGTACAGTAAAGGTCTGGGACCTGAAGA
GTACTGATTGCCTCCAGACATTTAAGCCACCACCTCCTTTGAGGGGAGGT
GATGCTTCAGTGAACTCTGTCCATTTATTCCCAAAGAATCCTGATCACAT
AGTCGTATGTAATAAGACATCCTCAATATACATAATGACTCCTCAAGGAC
AGGTTGTGAAGAGTTTTTCTTCTGGTAAAAGAGAAGGTGGAGATTTTGTT
GCTGCTTGTGTTTCACCGAAAGGTGAATGGATCTATTGTGTTGGTGAAGA
CAGGAACTTGTACTGCTTCAGCCATCAGTCTGGTAAACTAGAGCATCTAA
TGAAGGTCCATGAAAAGGATGTAATTGGTGTGACTCATCATCCCCATAGA
AACCTTCTGGCAACATATGGTGAAGATTGCACAATGAAATTATGGAAGCC
TTGATTCCCTGTATTTGCTTCCGTTGAAATGAAAAATGTTTCTGTAATTT
CTTGGAATGTTGTCTTCATTCATTAGACCCATTATTCACTGGGGGAGCAT
GGGTTGGAAGAACCAAATTTC
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