CN181766

Overview
NameCN181766
Unique NameCN181766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2633 contig Csv1_Contig2633:25..573. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181766 vs. ExPASy Swiss-Prot
Match: PGKY_TOBAC (Phosphoglycerate kinase, cytosolic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.296e-38
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 3
Query:    6 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 251
            WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLA+KMSHISTGGGASLELLEGK LPGVLALDDA
Sbjct:  320 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLAEKMSHISTGGGASLELLEGKPLPGVLALDDA 401          
BLAST of CN181766 vs. ExPASy Swiss-Prot
Match: PGKY_WHEAT (Phosphoglycerate kinase, cytosolic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.584e-36
Identity = 75/82 (91.46%), Postives = 80/82 (97.56%), Query Frame = 3
Query:    6 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 251
            WNGPMGVFEF+KFAAGT+AIAK+LAEL+GKGVTTIIGGGDSVAAVEK GLADKMSHISTGGGASLELLEGK LPGVLALD+A
Sbjct:  320 WNGPMGVFEFEKFAAGTDAIAKQLAELTGKGVTTIIGGGDSVAAVEKAGLADKMSHISTGGGASLELLEGKPLPGVLALDEA 401          
BLAST of CN181766 vs. ExPASy Swiss-Prot
Match: PGKH_TOBAC (Phosphoglycerate kinase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 7.862e-36
Identity = 74/82 (90.24%), Postives = 78/82 (95.12%), Query Frame = 3
Query:    6 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 251
            WNGPMGVFEFDKFA GTEAIAKKLA+LSGKGVTTIIGGGDSVAAVEKVG+A  MSHISTGGGASLELLEGK LPGV+ALD+A
Sbjct:  394 WNGPMGVFEFDKFAVGTEAIAKKLADLSGKGVTTIIGGGDSVAAVEKVGVASVMSHISTGGGASLELLEGKVLPGVIALDEA 475          
BLAST of CN181766 vs. ExPASy Swiss-Prot
Match: PGKH_WHEAT (Phosphoglycerate kinase, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.655e-35
Identity = 73/81 (90.12%), Postives = 77/81 (95.06%), Query Frame = 3
Query:    6 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 248
            WNGPMGVFEFDKFA GTE+IAKKLAELS KGVTTIIGGGDSVAAVEKVG+AD MSHISTGGGASLELLEGK LPGV+ALD+
Sbjct:  391 WNGPMGVFEFDKFAVGTESIAKKLAELSKKGVTTIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVVALDE 471          
BLAST of CN181766 vs. ExPASy Swiss-Prot
Match: PGK_SYNS3 (Phosphoglycerate kinase OS=Synechococcus sp. (strain CC9311) GN=pgk PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.936e-34
Identity = 73/82 (89.02%), Postives = 74/82 (90.24%), Query Frame = 3
Query:    6 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 251
            WNGPMGVFEFDKFAAGT AIA  LAELSGKG  TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGK LPGV ALDDA
Sbjct:  320 WNGPMGVFEFDKFAAGTNAIATTLAELSGKGCCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKVLPGVAALDDA 401          
BLAST of CN181766 vs. ExPASy Swiss-Prot
Match: PGK_PROMM (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9313) GN=pgk PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.314e-34
Identity = 72/82 (87.80%), Postives = 74/82 (90.24%), Query Frame = 3
Query:    6 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 251
            WNGPMGVFEFDKFAAGT AIA  LA+LSGKG  TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGK LPGV ALDDA
Sbjct:  320 WNGPMGVFEFDKFAAGTNAIATTLADLSGKGCCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKVLPGVAALDDA 401          
BLAST of CN181766 vs. ExPASy Swiss-Prot
Match: PGK_PROM3 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9303) GN=pgk PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.314e-34
Identity = 72/82 (87.80%), Postives = 74/82 (90.24%), Query Frame = 3
Query:    6 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 251
            WNGPMGVFEFDKFAAGT AIA  LA+LSGKG  TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGK LPGV ALDDA
Sbjct:  320 WNGPMGVFEFDKFAAGTNAIATTLADLSGKGCCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKVLPGVAALDDA 401          
BLAST of CN181766 vs. ExPASy Swiss-Prot
Match: PGK_NOSP7 (Phosphoglycerate kinase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=pgk PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 7.358e-34
Identity = 71/82 (86.59%), Postives = 74/82 (90.24%), Query Frame = 3
Query:    6 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 251
            WNGPMGVFEFDKFAAGTEAIA  LAE+   G TTIIGGGDSVAAVEKVGLAD+MSHISTGGGASLELLEGK LPG+ ALDDA
Sbjct:  319 WNGPMGVFEFDKFAAGTEAIAHTLAEIGKTGTTTIIGGGDSVAAVEKVGLADQMSHISTGGGASLELLEGKVLPGIAALDDA 400          
BLAST of CN181766 vs. ExPASy Swiss-Prot
Match: PGKH_SPIOL (Phosphoglycerate kinase, chloroplastic (Fragment) OS=Spinacia oleracea PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 7.358e-34
Identity = 71/82 (86.59%), Postives = 77/82 (93.90%), Query Frame = 3
Query:    6 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 251
            WNGPMGVFEF+KFAAGTEAIAKKL E+S KG TTIIGGGDSVAAVEKVG+A+ MSHISTGGGASLELLEGK LPGVLAL++A
Sbjct:  347 WNGPMGVFEFEKFAAGTEAIAKKLEEISKKGATTIIGGGDSVAAVEKVGVAEAMSHISTGGGASLELLEGKQLPGVLALNEA 428          
BLAST of CN181766 vs. ExPASy Swiss-Prot
Match: PGKH_ARATH (Phosphoglycerate kinase, chloroplastic OS=Arabidopsis thaliana GN=At1g56190 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 7.358e-34
Identity = 72/82 (87.80%), Postives = 76/82 (92.68%), Query Frame = 3
Query:    6 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 251
            WNGPMGVFE +KFAAGTEAIA KLAELS KGVTTIIGGGDSVAAVEKVG+A  MSHISTGGGASLELLEGK LPGV+ALD+A
Sbjct:  392 WNGPMGVFEMEKFAAGTEAIANKLAELSEKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKVLPGVIALDEA 473          
The following BLAST results are available for this feature:
BLAST of CN181766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGKY_TOBAC1.296e-3897.56Phosphoglycerate kinase, cytosolic OS=Nicotiana ta... [more]
PGKY_WHEAT1.584e-3691.46Phosphoglycerate kinase, cytosolic OS=Triticum aes... [more]
PGKH_TOBAC7.862e-3690.24Phosphoglycerate kinase, chloroplastic OS=Nicotian... [more]
PGKH_WHEAT6.655e-3590.12Phosphoglycerate kinase, chloroplastic OS=Triticum... [more]
PGK_SYNS31.936e-3489.02Phosphoglycerate kinase OS=Synechococcus sp. (stra... [more]
PGK_PROMM4.314e-3487.80Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROM34.314e-3487.80Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_NOSP77.358e-3486.59Phosphoglycerate kinase OS=Nostoc punctiforme (str... [more]
PGKH_SPIOL7.358e-3486.59Phosphoglycerate kinase, chloroplastic (Fragment) ... [more]
PGKH_ARATH7.358e-3487.80Phosphoglycerate kinase, chloroplastic OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181766 ID=CN181766; Name=CN181766; organism=Citrus sinensis; type=EST; length=549bp
GAGGCTGGAATGGACCTATGGGTGTGTTTGAATTTGATAAATTTGCTGCT
GGCACTGAGGCAATTGCCAAGAAGCTTGCGGAGCTCAGCGGGAAGGGAGT
GACCACAATCATTGGAGGAGGTGACTCAGTTGCAGCCGTAGAGAAGGTTG
GTCTGGCTGACAAGATGAGCCATATCTCCACTGGAGGTGGAGCCAGCTTA
GAGCTCCTTGAGGGCAAAACACTCCCTGGTGTGCTTGCTCTTGATGATGC
TTAAACCCAGTTCCTGGACTTTCCTTTTTTAAATGTGCCATTTCCAGAGT
TGTATGTGTGGCTGGTTGTCAGCCCAGAGTGGATAAAAGTTAAACTTTAT
CATTAGAGTTGGTTTTGTAGATGCTGTAAGAGTAAAAATAAATTCTTTCT
CACAGGCATCAATGGTGATGCATTTTTCTGGATTTGATCCCATTTTGGAA
CATTGTGATGGTAAGGCTATAAGTTTCCTGAAGTCAAGTTCTTGTTCCTT
TCTGATCACAATGAGCCGTTGATGATTGTTAGATAATGCATGAATCCTG
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