CN181762 | Citrus Genome Database

Overview


Name	CN181762
Unique Name	CN181762
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	502

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig9742	contig	Csv1_Contig9742:769..1269.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: ADH1_SOLTU (Alcohol dehydrogenase 1 OS=Solanum tuberosum GN=ADH1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 4.803e-54
Identity = 59/70 (84.29%), Postives = 66/70 (94.29%), Query Frame = -2

Query:  292 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGT 501
            +P+QEVIAEMT+GGVDRSVECTG+ID MISAFECVHDGWGVAVLVGVP K+AVF T P+N+LNERTLKGT
Sbjct:  252 KPVQEVIAEMTDGGVDRSVECTGHIDAMISAFECVHDGWGVAVLVGVPHKEAVFKTHPMNLLNERTLKGT 321

HSP 2 Score: 104.375 bits (259), Expect = 4.803e-54
Identity = 46/58 (79.31%), Postives = 55/58 (94.83%), Query Frame = -3

Query:  114 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISMED 287
            FGNYKPR+D+PSVV+ YMNK+LELEKFITH +PF+EINKAF+ M+KGEGLRCII+MED
Sbjct:  323 FGNYKPRSDIPSVVEKYMNKELELEKFITHTLPFAEINKAFDLMLKGEGLRCIITMED 380

[Close]

BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: ADH1_PETHY (Alcohol dehydrogenase 1 OS=Petunia hybrida GN=ADH1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.339e-52
Identity = 56/70 (80.00%), Postives = 65/70 (92.86%), Query Frame = -2

Query:  292 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGT 501
            +P+Q+VIAEMT+GGVDRSVECTGN++ MISAFECVHDGWGVAVLVGVP+KD  F T P+N+LNERTLKGT
Sbjct:  254 KPVQQVIAEMTDGGVDRSVECTGNVNAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGT 323

HSP 2 Score: 101.293 bits (251), Expect = 3.339e-52
Identity = 43/57 (75.44%), Postives = 54/57 (94.74%), Query Frame = -3

Query:  117 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISME 287
            FGNYKP++D+PSVVD YM K+LELEKFITH++PFSEINKAF+YM+KGE +RC+I+ME
Sbjct:  325 FGNYKPKSDIPSVVDKYMKKELELEKFITHQVPFSEINKAFDYMLKGESIRCMITME 381

[Close]

BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: ADH2_HORVU (Alcohol dehydrogenase 2 OS=Hordeum vulgare GN=ADH2 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 8.378e-44
Identity = 49/70 (70.00%), Postives = 57/70 (81.43%), Query Frame = -2

Query:  292 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGT 501
            +P+QEVI EMT+GGV+R+VECTGN D MISAFECVHDGWGVA       K+AVF T P+N LNERTL+GT
Sbjct:  251 KPVQEVIVEMTDGGVNRAVECTGNADAMISAFECVHDGWGVA------HKEAVFKTHPMNFLNERTLRGT 314

HSP 2 Score: 94.3597 bits (233), Expect = 8.378e-44
Identity = 41/58 (70.69%), Postives = 50/58 (86.21%), Query Frame = -3

Query:  114 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISMED 287
            FGNYKPRT LP VVDMYM K+LEL+KFITH +PFS+IN AF+ M++GEGLRC+I  E+
Sbjct:  316 FGNYKPRTGLPGVVDMYMRKELELDKFITHSLPFSQINTAFDLMLRGEGLRCVIRSEE 373

[Close]

BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: ADH2_SOLLC (Alcohol dehydrogenase 2 OS=Solanum lycopersicum GN=ADH2 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 7.691e-29
Identity = 59/70 (84.29%), Postives = 65/70 (92.86%), Query Frame = -2

Query:  292 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGT 501
            +P+QEVIAEMT+GGVDRSVECTG+ID MISAFECVHDGWGVAVLVGVP K+AVF T P+N LNERTLKGT
Sbjct:  252 KPVQEVIAEMTDGGVDRSVECTGHIDAMISAFECVHDGWGVAVLVGVPHKEAVFKTHPLNFLNERTLKGT 321

HSP 2 Score: 100.908 bits (250), Expect = 3.402e-21
Identity = 46/69 (66.67%), Postives = 57/69 (82.61%), Query Frame = -3

Query:  114 YLTKEPSKEH*FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISMED 320
            +L +   K   FGNYKPR+D+P VV+ YMNK+LELEKFITH +PF+EINKAF+ M+KGEGLRCII+M D
Sbjct:  312 FLNERTLKGTFFGNYKPRSDIPCVVEKYMNKELELEKFITHTLPFAEINKAFDLMLKGEGLRCIITMAD 380

[Close]

BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: ADH3_SOLTU (Alcohol dehydrogenase 3 OS=Solanum tuberosum GN=ADH3 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.004e-28
Identity = 59/70 (84.29%), Postives = 65/70 (92.86%), Query Frame = -2

Query:  292 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGT 501
            +P+QEVIAEMT+GGVDRSVECTG+ID MISAFECVHDGWGVAVLVGVP K+AVF T P+N LNERTLKGT
Sbjct:  252 KPVQEVIAEMTDGGVDRSVECTGHIDAMISAFECVHDGWGVAVLVGVPHKEAVFKTHPMNFLNERTLKGT 321

HSP 2 Score: 105.145 bits (261), Expect = 1.804e-22
Identity = 48/69 (69.57%), Postives = 59/69 (85.51%), Query Frame = -3

Query:  114 YLTKEPSKEH*FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISMED 320
            +L +   K   FGNYKPR+D+PSVV+ YMNK+LELEKFITH +PF+EINKAF+ M+KGEGLRCII+MED
Sbjct:  312 FLNERTLKGTFFGNYKPRSDIPSVVEKYMNKELELEKFITHTLPFAEINKAFDLMLKGEGLRCIITMED 380

[Close]

BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: ADH2_SOLTU (Alcohol dehydrogenase 2 OS=Solanum tuberosum GN=ADH2 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.004e-28
Identity = 59/70 (84.29%), Postives = 65/70 (92.86%), Query Frame = -2

Query:  292 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGT 501
            +P+QEVIAEMT+GGVDRSVECTG+ID MISAFECVHDGWGVAVLVGVP K+AVF T P+N LNERTLKGT
Sbjct:  252 KPVQEVIAEMTDGGVDRSVECTGHIDAMISAFECVHDGWGVAVLVGVPHKEAVFKTHPMNFLNERTLKGT 321

HSP 2 Score: 105.145 bits (261), Expect = 1.804e-22
Identity = 48/69 (69.57%), Postives = 59/69 (85.51%), Query Frame = -3

Query:  114 YLTKEPSKEH*FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISMED 320
            +L +   K   FGNYKPR+D+PSVV+ YMNK+LELEKFITH +PF+EINKAF+ M+KGEGLRCII+MED
Sbjct:  312 FLNERTLKGTFFGNYKPRSDIPSVVEKYMNKELELEKFITHTLPFAEINKAFDLMLKGEGLRCIITMED 380

[Close]

BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: ADH_FRAAN (Alcohol dehydrogenase OS=Fragaria ananassa GN=ADH PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.312e-28
Identity = 58/70 (82.86%), Postives = 63/70 (90.00%), Query Frame = -2

Query:  292 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGT 501
            +P+QEVIAE+TNGGVDRS+ECTGNI  MI AFECVHDGWGVAVLVGVP KDAVF T P+N LNERTLKGT
Sbjct:  252 KPVQEVIAELTNGGVDRSIECTGNIQAMIPAFECVHDGWGVAVLVGVPHKDAVFTTHPMNFLNERTLKGT 321

HSP 2 Score: 105.916 bits (263), Expect = 1.057e-22
Identity = 46/69 (66.67%), Postives = 61/69 (88.41%), Query Frame = -3

Query:  114 YLTKEPSKEH*FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISMED 320
            +L +   K   FGNYKPRTD+PSVV+ YMNK+LE++KFITH++PFS+INKAF+YM+KGEG+RCII+ME+
Sbjct:  312 FLNERTLKGTFFGNYKPRTDIPSVVEKYMNKELEVDKFITHQLPFSQINKAFDYMLKGEGIRCIITMEE 380

[Close]

BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: ADH1_ZEALU (Alcohol dehydrogenase 1 (Fragment) OS=Zea luxurians GN=ADH1 PE=3 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 2.238e-28
Identity = 58/70 (82.86%), Postives = 63/70 (90.00%), Query Frame = -2

Query:  292 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGT 501
            +P+QEV+AEMTNGGVDRSVECTGNI+ MI AFECVHDGWGVAVLVGVP KDA F T P+N LNERTLKGT
Sbjct:  178 KPVQEVLAEMTNGGVDRSVECTGNINAMIQAFECVHDGWGVAVLVGVPHKDAEFKTHPMNFLNERTLKGT 247

HSP 2 Score: 78.9518 bits (193), Expect = 1.384e-14
Identity = 35/55 (63.64%), Postives = 45/55 (81.82%), Query Frame = -3

Query:  156 YLTKEPSKEH*FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYM 320
            +L +   K   FGNYKPRTDLP+VV++YM K+LE+EKFITH +PF+EINKAF+ M
Sbjct:  238 FLNERTLKGTFFGNYKPRTDLPNVVELYMKKELEVEKFITHSVPFAEINKAFDLM 292

[Close]

BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: ADH1_MAIZE (Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.238e-28
Identity = 58/70 (82.86%), Postives = 63/70 (90.00%), Query Frame = -2

Query:  292 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGT 501
            +P+QEV+AEMTNGGVDRSVECTGNI+ MI AFECVHDGWGVAVLVGVP KDA F T P+N LNERTLKGT
Sbjct:  251 KPVQEVLAEMTNGGVDRSVECTGNINAMIQAFECVHDGWGVAVLVGVPHKDAEFKTHPMNFLNERTLKGT 320

HSP 2 Score: 100.523 bits (249), Expect = 4.443e-21
Identity = 45/69 (65.22%), Postives = 57/69 (82.61%), Query Frame = -3

Query:  114 YLTKEPSKEH*FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISMED 320
            +L +   K   FGNYKPRTDLP+VV++YM K+LE+EKFITH +PF+EINKAF+ M KGEG+RCII ME+
Sbjct:  311 FLNERTLKGTFFGNYKPRTDLPNVVELYMKKELEVEKFITHSVPFAEINKAFDLMAKGEGIRCIIRMEN 379

[Close]

BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: ADH1_PENAM (Alcohol dehydrogenase 1 OS=Pennisetum americanum GN=ADH1 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.985e-28
Identity = 57/70 (81.43%), Postives = 63/70 (90.00%), Query Frame = -2

Query:  292 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGT 501
            +P+QEV+A+MTNGGVDRSVECTGNI+ MI AFECVHDGWGVAVLVGVP KDA F T P+N LNERTLKGT
Sbjct:  251 KPVQEVLADMTNGGVDRSVECTGNINAMIQAFECVHDGWGVAVLVGVPHKDAEFKTHPMNFLNERTLKGT 320

HSP 2 Score: 100.138 bits (248), Expect = 5.802e-21
Identity = 45/69 (65.22%), Postives = 57/69 (82.61%), Query Frame = -3

Query:  114 YLTKEPSKEH*FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISMED 320
            +L +   K   FGN+KPRTDLP+VV++YM K+LE+EKFITH +PFSEINKAF+ M KGEG+RCII ME+
Sbjct:  311 FLNERTLKGTFFGNFKPRTDLPNVVELYMKKELEVEKFITHSVPFSEINKAFDLMAKGEGIRCIIRMEN 379

The following BLAST results are available for this feature:

BLAST of CN181762 vs. ExPASy Swiss-Prot

BLAST of CN181762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100


Match Name	E-value	Identity	Description
ADH1_SOLTU	4.803e-54	84.29	Alcohol dehydrogenase 1 OS=Solanum tuberosum GN=AD...	[more]
ADH1_PETHY	3.339e-52	80.00	Alcohol dehydrogenase 1 OS=Petunia hybrida GN=ADH1...	[more]
ADH2_HORVU	8.378e-44	70.00	Alcohol dehydrogenase 2 OS=Hordeum vulgare GN=ADH2...	[more]
ADH2_SOLLC	7.691e-29	84.29	Alcohol dehydrogenase 2 OS=Solanum lycopersicum GN...	[more]
ADH3_SOLTU	1.004e-28	84.29	Alcohol dehydrogenase 3 OS=Solanum tuberosum GN=AD...	[more]
ADH2_SOLTU	1.004e-28	84.29	Alcohol dehydrogenase 2 OS=Solanum tuberosum GN=AD...	[more]
ADH_FRAAN	1.312e-28	82.86	Alcohol dehydrogenase OS=Fragaria ananassa GN=ADH ...	[more]
ADH1_ZEALU	2.238e-28	82.86	Alcohol dehydrogenase 1 (Fragment) OS=Zea luxurian...	[more]
ADH1_MAIZE	2.238e-28	82.86	Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 S...	[more]
ADH1_PENAM	4.985e-28	81.43	Alcohol dehydrogenase 1 OS=Pennisetum americanum G...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS04_0001H03_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN181762 ID=CN181762; Name=CN181762; organism=Citrus sinensis; type=EST; length=502bp
AAGACATATACTTAGGGACTGATGCATCAAGTTACAAAGATGAAGTCAAT
AGCAGGTGCTTGCCCACCTACTGTTGTTATTTACTTGATTATTCTTTCCC
TTTTTCGCTCCTAGTCTTCCATGCTGATAATGCACCTCAAACCCTCCCCT
TTCACCATGTACTCGAAGGCTTTATTGATTTCCGAGAAAGGGATGCGATG
GGTTATAAACTTCTCCAGTTCCAGTTGCTTGTTCATGTACATATCAACGA
CAGAGGGCAGATCAGTCCGCGGTTTGTAGTTCCCGAATTAATGTTCCTTT
GAGGGTTCTTTCGTTAAGTACATTGATCGGCTTGGTCATGAACACTGCAT
CCTTACTGGGGACTCCAACGAGCACAGCTACACCCCATCCATCATGAACA
CACTCGAAGGCTGAGATCATGTTATCAATGTTGCCGGTGCACTCCACACT
TCTGTCAACTCCACCGTTCGTCATCTCTGCAATTACCTCTTGAATTGGTC
TG