CN181758

Overview
NameCN181758
Unique NameCN181758
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181758_ssr21 microsatellite CN181758_ssr21:21..38. BLAST: Citrus ESTs to Prunus persica proteins V1
CN181758_ssr171 microsatellite CN181758_ssr171:171..185. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181758 vs. ExPASy Swiss-Prot
Match: DLDH_SYNY3 (Dihydrolipoyl dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=lpdA PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 1.049e-17
Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:  370 KSFDYDXXXXXXXXXXXXXXXXXXEKGLKTAIIEGDVVGGTCVNRGCVPSKALLAVSGRMRELQSEHHMKALGLQVHAAGYDRQGVADHANN 645
            + FDYD                  + GLKTAIIE   +GGTCVNRGC+PSKALLA SGR+RE+  + H++ LG+Q++   + R+ +A HAN+
Sbjct:    3 QDFDYDLVIIGAGVGGHGAALHAVKCGLKTAIIEAKDMGGTCVNRGCIPSKALLAASGRVREMSDQDHLQQLGIQINGVTFTREAIAAHAND 94
The following BLAST results are available for this feature:
BLAST of CN181758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DLDH_SYNY31.049e-1745.65Dihydrolipoyl dehydrogenase OS=Synechocystis sp. (... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181758 ID=CN181758; Name=CN181758; organism=Citrus sinensis; type=EST; length=645bp
CAAACACGCCCTCTCTATATCTCCTCCTCCTCCTCCTCAGATCTCTCATT
TGCTGTTCATTTCTATTTCTCTTCTAGCAAAATGCATTACTCCGCTGCTT
TCTCTCAAGCGGCCACATCAGCAACTGCTGTGCCAACGATCTCCGGATCA
CGCCACGTCGGTGCTCTTCATTCTTCTTCTTCTTCGTGCACTCTTCTTAT
TCCTTCCAAACCGATTAATCTCCGATTCTGTGGCTTACGCCGCGAGGCCT
TCGGCTTCTCGCCTTCTGCATTTACTCGCTGTTCCAATTCCCAGCGAGTT
CAGCTTCCTTCTCGACGTCGTTTTAAAGGAAGTAATGTCTCCGCTTCTCT
CGGTGATAACGGAATCCCGAAGTCTTTTGATTATGATTTGATTATTATTG
GCGCTGGCGTTGGTGGCCATGGAGCCGCTTTGCATGCCGTTGAGAAGGGA
CTCAAAACTGCCATCATTGAGGGAGACGTGGTGGGAGGAACATGTGTGAA
CAGAGGATGTGTTCCTTCTAAGGCTCTCCTGGCAGTAAGTGGTCGAATGC
GTGAACTTCAGAGTGAGCATCATATGAAGGCTTTAGGTCTGCAGGTCCAT
GCTGCTGGGTATGATAGACAGGGAGTGGCCGATCATGCCAATAAC
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