CN188709

Overview
NameCN188709
Unique NameCN188709
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length310
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188709 vs. ExPASy Swiss-Prot
Match: PARG1_ARATH (Poly(ADP-ribose) glycohydrolase 1 OS=Arabidopsis thaliana GN=PARG1 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.766e-20
Identity = 40/58 (68.97%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 YXFGIDALQNLDQITQWILSHEWTVGDLWNIMVEYSSQRLNGRTDLGFFAWLLPSLTS 174
            Y FG++AL+NLDQ+T+WILSH+WTVGDLWN+M+EYS+QRL  +T +GFF+WLLPSL +
Sbjct:  483 YTFGVEALRNLDQVTKWILSHKWTVGDLWNMMLEYSAQRLYKQTSVGFFSWLLPSLAT 540
[Close]
BLAST of CN188709 vs. ExPASy Swiss-Prot
Match: PARG2_ARATH (Probable poly(ADP-ribose) glycohydrolase 2 OS=Arabidopsis thaliana GN=PARG2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.731e-13
Identity = 33/58 (56.90%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:    1 YXFGIDALQNLDQITQWILSHEWTVGDLWNIMVEYSSQRLNGRTDLGFFAWLLPSLTS 174
            Y FG+ ALQNL+Q+ + +   E TVGDLW  +VEYSS+RL+ RT LGFF+WL+ SL++
Sbjct:  465 YTFGLQALQNLNQVIEMVALQEMTVGDLWKKLVEYSSERLSRRTWLGFFSWLMTSLST 522
The following BLAST results are available for this feature:
BLAST of CN188709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PARG1_ARATH1.766e-2068.97Poly(ADP-ribose) glycohydrolase 1 OS=Arabidopsis t... [more]
PARG2_ARATH2.731e-1356.90Probable poly(ADP-ribose) glycohydrolase 2 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006K01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006K01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188709 ID=CN188709; Name=CN188709; organism=Citrus sinensis; type=EST; length=310bp
TACANATTTGGGATCGATGCCTTGCAAAACCTAGATCAGATTACGCAGTG
GATTCTGTCGCATGAATGGACAGTCGGAGACCTTTGGAATATCATGGTGG
AGTACTCATCCCAAAGATTGAATGGACGAACCGATCTTGGCTTCTTTGCT
TGGCTTCTTCCATCCTTAACTTCCCATGAATTGTCAAATACAAATTAAGA
TTGTATACATGAATCATGCAACACGCAAATTGTTAACAGTTATATAGGTA
AAATAGGTTATTTTGTTAAGCCTTTTAATAACCAATAAGATTCGTAGTAT
TTTCCCAAAA
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