CN188708

Overview
NameCN188708
Unique NameCN188708
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length332
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN188708 vs. ExPASy Swiss-Prot
Match: PARG1_ARATH (Poly(ADP-ribose) glycohydrolase 1 OS=Arabidopsis thaliana GN=PARG1 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 6.552e-23
Identity = 45/63 (71.43%), Postives = 57/63 (90.48%), Query Frame = -3 
Query:  139 PFIL*YTFGIDALQNLDQITQWILSHEWTVGDLWNMMVEYSSQRLNGRTDLGFFAWLLPSLTS 327
            PFI  YTFG++AL+NLDQ+T+WILSH+WTVGDLWNMM+EYS+QRL  +T +GFF+WLLPSL +
Sbjct:  478 PFISYYTFGVEALRNLDQVTKWILSHKWTVGDLWNMMLEYSAQRLYKQTSVGFFSWLLPSLAT 540
[Close]
BLAST of CN188708 vs. ExPASy Swiss-Prot
Match: PARG2_ARATH (Probable poly(ADP-ribose) glycohydrolase 2 OS=Arabidopsis thaliana GN=PARG2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.850e-15
Identity = 36/63 (57.14%), Postives = 49/63 (77.78%), Query Frame = -3 
Query:  139 PFIL*YTFGIDALQNLDQITQWILSHEWTVGDLWNMMVEYSSQRLNGRTDLGFFAWLLPSLTS 327
            PF+  YTFG+ ALQNL+Q+ + +   E TVGDLW  +VEYSS+RL+ RT LGFF+WL+ SL++
Sbjct:  460 PFMSYYTFGLQALQNLNQVIEMVALQEMTVGDLWKKLVEYSSERLSRRTWLGFFSWLMTSLST 522
The following BLAST results are available for this feature:
BLAST of CN188708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PARG1_ARATH6.552e-2371.43Poly(ADP-ribose) glycohydrolase 1 OS=Arabidopsis t... [more]
PARG2_ARATH3.850e-1557.14Probable poly(ADP-ribose) glycohydrolase 2 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006K01_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006K01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188708 ID=CN188708; Name=CN188708; organism=Citrus sinensis; type=EST; length=332bp
CCCTTTTTGGGAAATACTCNAATCTTATTGGTTATTAAAAGGCTTAACAA
AACCCCTTATTTTTCCTATATAACTGTTAACAATTTGCGTGTTGCATGAT
TCATGTATACAATCTTAATTTGTATTTGACAATTCATGGGAAGTTAAGGA
TGGAAGAAGCCAAGCAAAGAAGCCAAGATCGGTTCGTCCATTCAATCTTT
GGGATGAGTACTCCACCATCATATTCCAAAGGTCTCCGACTGTCCATTCA
TGCGACAGAATCCACTGCGTAATCTGATCTAGGTTTTGCAATGCATCGAT
GCCAAATGTGTATTATAAAATGAAAGGTCCCT
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