CN188704

Overview
NameCN188704
Unique NameCN188704
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLG2_ARATH (Cellulose synthase-like protein G2 OS=Arabidopsis thaliana GN=CSLG2 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.158e-51
Identity = 96/173 (55.49%), Postives = 120/173 (69.36%), Query Frame = -2
Query:  143 LNTTEPIRRTALNRVFAVVYTCAIFALLYHHVETLTIRGRNPXXXXXXXXXXXXXVILALMWATTQAFRMRPIHRREFPGNLQKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 661
            L+T  P RRT   R++AV +TC I AL+YHHV ++     N              ++LA MWATT + R+ PIHR E+P       +P +FP LDV ICTADPYKEPP+ VVNTALSVMAY+YP+ K+SVYVSDDGGS+LTLFA MEAAKF+ HWLPFC+  N+ +R+P  YF
Sbjct:   11 LHTCHPCRRTIPYRIYAVFHTCGIIALMYHHVHSIV----NANNTLITCLLLLSDIVLAFMWATTTSLRLNPIHRTEYPEKY--AAKPEDFPKLDVFICTADPYKEPPMMVVNTALSVMAYEYPSHKISVYVSDDGGSSLTLFALMEAAKFSKHWLPFCKNNNVQDRSPEVYF 177          
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLG3_ARATH (Cellulose synthase-like protein G3 OS=Arabidopsis thaliana GN=CSLG3 PE=2 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 5.703e-50
Identity = 95/173 (54.91%), Postives = 119/173 (68.79%), Query Frame = -2
Query:  143 LNTTEPIRRTALNRVFAVVYTCAIFALLYHHVETLTIRGRNPXXXXXXXXXXXXXVILALMWATTQAFRMRPIHRREFPGNLQKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 661
            L+T  P RRT   R++AV +TC I AL+YHHV +L                    ++LA MWATT + R +P+ R E+P        P +FP LDV ICTADPYKEPP+ VVNTALSVMAY+YP++K+SVYVSDDGGS+LTLFA MEAAKF+ HWLPFC+K N+ +R+P  YF
Sbjct:   33 LHTCHPCRRTIPYRIYAVFHTCGIIALMYHHVHSLLTANTT----LITSLLLLSDIVLAFMWATTTSLRYKPVRRTEYPEKY--AAEPEDFPKLDVFICTADPYKEPPMMVVNTALSVMAYEYPSDKISVYVSDDGGSSLTLFALMEAAKFSKHWLPFCKKNNVQDRSPEVYF 199          
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLG1_ARATH (Cellulose synthase-like protein G1 OS=Arabidopsis thaliana GN=CSLG1 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.306e-49
Identity = 92/173 (53.18%), Postives = 118/173 (68.21%), Query Frame = -2
Query:  143 LNTTEPIRRTALNRVFAVVYTCAIFALLYHHVETLTIRGRNPXXXXXXXXXXXXXVILALMWATTQAFRMRPIHRREFPGNLQKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 661
            L+T  P RRT   R++A+ +TC I AL+YHHV +L                    ++LA MWATT + R+ P+HR E P       +P +FP LDV ICTADPYKEPP+ VVNTALSVMAY+YP++K+SVYVSDDGGS+LT FA +EAAKF+  WLPFC+K N+ +R+P  YF
Sbjct:   14 LHTCHPCRRTIPYRIYAIFHTCGIIALMYHHVHSLVTANNT----LITCLLLLSDIVLAFMWATTTSLRLNPVHRTECPEKY--AAKPEDFPKLDVFICTADPYKEPPMMVVNTALSVMAYEYPSDKISVYVSDDGGSSLTFFALIEAAKFSKQWLPFCKKNNVQDRSPEVYF 180          
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLE6_ORYSJ (Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.363e-32
Identity = 73/182 (40.11%), Postives = 102/182 (56.04%), Query Frame = -2
Query:  143 KSSGTEIPPLNTTEPIRRTALNRVFAVVYTCAIFALLYHHVETLTIRGRNPXXXXXXXXXXXXXVILALMWATTQAFRMRPIHRREFPGNLQKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 688
            +++ TE   L  TE +   A+ R+ A      I  +LY+    +   G                   A+ W  TQ+ R  P+ RR F   L +  +    P +DV +CTADP+ EPP  V++T LSVMAY+YP+EK+SVY+SDDGGS LT +A  EA+ FA  WLPFCR++N+  R+P AYF
Sbjct:    2 ETTTTERRRLFATEKVGGRAVYRLQAATVAAGILLVLYYRATRVPAAGEGRAAWLGMAAAELW---FAVYWVITQSVRWCPVRRRTFKNRLAERYK-ENLPGVDVFVCTADPHAEPPSLVISTILSVMAYNYPSEKISVYLSDDGGSILTFYALWEASMFAKKWLPFCRRYNIEPRSPAAYF 179          
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLE1_ORYSJ (Cellulose synthase-like protein E1 OS=Oryza sativa subsp. japonica GN=CSLE1 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 7.004e-32
Identity = 72/174 (41.38%), Postives = 97/174 (55.75%), Query Frame = -2
Query:  143 PLNTTEPIRRTALNRVFAVVYTCAIFALLYHHVETLTIRGRNPXXXXXXXXXXXXXVILALMWATTQAFRMRPIHRREFPGNLQKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 664
            PL TTE +   A+ RV A      I  +LY+    +   G                   A+ W   Q+ R RP  RR F   L +    +  P +D+ +CTADP  EPP  V++T LSVMAY+YP+EK+SVY+SDDGGS LT +A  EA+ FA  WLPFC+++N+  R+P AYF
Sbjct:   15 PLFTTEELGGRAVYRVQAATVAAGILLVLYYRATRVPAAGEGRAAWLGMAAAELW---FAVYWVIAQSVRWRPFRRRTFRDRLAERYE-QNLPGVDIFVCTADPQSEPPSLVISTILSVMAYNYPSEKISVYLSDDGGSILTFYALWEASIFAKKWLPFCKRYNIEPRSPAAYF 184          
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLE2_ORYSJ (Cellulose synthase-like protein E2 OS=Oryza sativa subsp. japonica GN=CSLE2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.118e-29
Identity = 67/177 (37.85%), Postives = 95/177 (53.67%), Query Frame = -2
Query:  143 PPLNTTEPIRRTALN--RVFAVVYTCAIFALLYHHVETLTIRGRNPXXXXXXXXXXXXXVILALMWATTQAFRMRPIHRREFPGNLQKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 667
            PPL  TE   R A+   RV A      +  +  +    L   G +              +     W  T + R  P++RR F   L +     E P++D+ +CTADP  EPP+ V++T LSVMAYDY  EKL++Y+SDD GS LT +   EA++FA HW+PFC+K+ +  R+P AYF
Sbjct:   17 PPLFATEKPGRMAMAAYRVSAATVFAGVLLIWLYRATHLPPGGGDGVRRWAWLGMLAAELWFGFYWVLTLSVRWCPVYRRTFKDRLAQSYSEDELPSVDIFVCTADPTAEPPMLVISTVLSVMAYDYLPEKLNIYLSDDAGSVLTFYVLCEASEFAKHWIPFCKKYKVEPRSPAAYF 193          
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLE1_ARATH (Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.754e-28
Identity = 65/132 (49.24%), Postives = 79/132 (59.85%), Query Frame = -2
Query:   89 LMWATTQAFRMRPIHRREFPGNLQKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYFXXXXXXXTHACCSEIKVY 484
            L W  TQ+ R  P+ R  F   L +     + P LDV +CTADP  EPPL VVNT LSV A DYP EKL+VY+SDDGGS LT +A  EAA+FA  W+PFC+KFN+   +P AY          A     K+Y
Sbjct:   78 LYWVVTQSSRWNPVWRFPFSDRLSRRYGS-DLPRLDVFVCTADPVIEPPLLVVNTVLSVTALDYPPEKLAVYLSDDGGSELTFYALTEAAEFAKTWVPFCKKFNVEPTSPAAYLSSKANCLDSAAEEVAKLY 208          
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLD5_ARATH (Cellulose synthase-like protein D5 OS=Arabidopsis thaliana GN=CSLD5 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.083e-24
Identity = 57/124 (45.97%), Postives = 74/124 (59.68%), Query Frame = -2
Query:  143 ALMWATTQAFRMRPIHRREFPG---------NLQKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 487
            AL W   Q  ++ P++R    G         NL+      + P +DV + TADP KEPPL   NT LS++A DYP EKL+ Y+SDDGG+ LT  A  + A FA+ W+PFCRK N+  RNP AYF
Sbjct:  358 ALSWLLDQLPKLCPVNRLTDLGVLKERFESPNLRNPKGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAVDYPVEKLACYLSDDGGALLTFEALAQTASFASTWVPFCRKHNIEPRNPEAYF 481          
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLD3_ARATH (Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.375e-24
Identity = 63/146 (43.15%), Postives = 80/146 (54.79%), Query Frame = -2
Query:  143 IRGRNPXXXXXXXXXXXXXVILALMWATTQAFRMRPIHRREFPGNL-QKVVRPR--------EFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 553
            I+ +NP             +  AL W   Q  ++ PI+R      L +K   P         + P LD+ + TADP KEPPL   NT LS++A DYP EKL+ YVSDDGG+ LT  A  EAA FA  W+PFCRK N+  RNP +YF
Sbjct:  312 IKHKNPDAIWLWGMSVVCELWFALSWLLDQLPKLCPINRATDLNVLKEKFETPTPSNPTGKSDLPGLDMFVSTADPEKEPPLVTSNTILSILAADYPVEKLACYVSDDGGALLTFEAMAEAASFANMWVPFCRKHNIEPRNPDSYF 457          
BLAST of CN188704 vs. ExPASy Swiss-Prot
Match: CSLB2_ARATH (Cellulose synthase-like protein B2 OS=Arabidopsis thaliana GN=CSLB2 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.375e-24
Identity = 62/180 (34.44%), Postives = 93/180 (51.67%), Query Frame = -2
Query:  143 SGTEIPPLNTTEPIRRTALNRVFAVVYTCAIFALLYHHVETLTIRGRNPXXXXXXXXXXXXXVILALMWATTQAFRMRPIHRREFPGNLQKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 682
            S   +PPL      +   L  V   +    +F+LL H +  ++  G                   + +W  +   +  P   + +P  L +  R  + P++D+ + TADP +EPP+ VVNT LS++A +YP  KL+ YVSDDG S LT F+  EA+KFA  W+PFC+K+NL  R P  YF
Sbjct:    4 SSCSLPPLYENISYKSYILRAVDLTILGL-LFSLLLHRILYMSQNG------IIWLVAFLCESCFSFVWLLSTCTKWSPAETKPYPDRLDE--RVYDLPSVDMFVPTADPVREPPIMVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNLKVRAPFRYF 174          
The following BLAST results are available for this feature:
BLAST of CN188704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CSLG2_ARATH5.158e-5155.49Cellulose synthase-like protein G2 OS=Arabidopsis ... [more]
CSLG3_ARATH5.703e-5054.91Cellulose synthase-like protein G3 OS=Arabidopsis ... [more]
CSLG1_ARATH6.306e-4953.18Cellulose synthase-like protein G1 OS=Arabidopsis ... [more]
CSLE6_ORYSJ5.363e-3240.11Cellulose synthase-like protein E6 OS=Oryza sativa... [more]
CSLE1_ORYSJ7.004e-3241.38Cellulose synthase-like protein E1 OS=Oryza sativa... [more]
CSLE2_ORYSJ1.118e-2937.85Cellulose synthase-like protein E2 OS=Oryza sativa... [more]
CSLE1_ARATH2.754e-2849.24Cellulose synthase-like protein E1 OS=Arabidopsis ... [more]
CSLD5_ARATH1.083e-2445.97Cellulose synthase-like protein D5 OS=Arabidopsis ... [more]
CSLD3_ARATH5.375e-2443.15Cellulose synthase-like protein D3 OS=Arabidopsis ... [more]
CSLB2_ARATH5.375e-2434.44Cellulose synthase-like protein B2 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006J20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188704 ID=CN188704; Name=CN188704; organism=Citrus sinensis; type=EST; length=725bp
CCCCCTGAGTTTTTTTTTTATTTATTATATATTGAAATATCATCATCACT
TTGCTATTTGAGATGCTACCATTATATTCTATTTATATGTATACCTTAAT
CTCGGAGCAACAAGCGTGGGTTGATGTGGATGATGATGAGGAGAAATATG
CATGAGGGTTTCTCTCCATAAGATTGAACTTCCTGCAAAAAGGTAACCAG
TGGGCTGCAAACTTAGCTGCCTCCATGAAAGCGAAGAGAGTAAGTGCCGA
TCCACCATCGTCCGATACATAAACCGAAAGCTTCTCCGTTGGATAGTCGT
AAGCCATCACCGATAAAGCCGTGTTCACAACACTGAGGGGCGGTTCCTTG
TAGGGATCCGCTGTGCATATAAGCACATCCAAAGCAGGAAATTCTCTCGG
TCTCACAACTTTTTGGAGGTTTCCGGGGAATTCCCTGCGATGAATAGGGC
GCATGCGAAAGGCCTGCGTGGTTGCCCACATCAAGGCTAGAATAACATCG
GACAGTAACAAACAGAAAGATACTACTAGCACCAAGGGGTTTCTGCCGCG
GATAGTTAGTGTTTCTACATGGTGATACAGTAGAGCAAATATGGCACACG
TGTAAACTACCGCGAACACACGGTTCAAGGCGGTCCGGCGGATGGGCTCC
GTCGTGTTAAGAGGAGGGATCTCGGTGCCGCTACTTTTGCCTCTCATTTC
TTTTTTGATGTGCTTATATCAGCCT
back to top