CN181747
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN181747 vs. ExPASy Swiss-Prot
Match: CCS_PIG (Copper chaperone for superoxide dismutase OS=Sus scrofa GN=CCS PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.012e-21 Identity = 67/168 (39.88%), Postives = 88/168 (52.38%), Query Frame = -1 Query: 24 VSAAVAEFKGPD-VFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNP--KIEGSVKEP---LGDLGTLVADEKGEAFFSGVKEVLRVADLIGRSIVVYGTED--------------KSDSGVTAAVIARSAGVGENYKKICACDGTIIWE 467 + AAVA G V GVVR Q+ E IE GL PG HG +++FGDLT+ S G +NP G ++ GDLG + AD G A F E+L+V D+IGRS+V+ ED S + +IARSAG+ +N K+IC+CDG IWE Sbjct: 86 LEAAVAILGGSGPVQGVVRFLQLTPERCLIEGTIDGLKPGLHGLHVHQFGDLTRNCNSCGDHFNPDGMSHGGPQDSDRHRGDLGNVCADADGRAVFRMEDELLKVWDVIGRSLVIDEGEDDLGRGGHPLSKITGNSGERLACGIIARSAGLFQNPKQICSCDGLTIWE 253
BLAST of CN181747 vs. ExPASy Swiss-Prot
Match: CCS_HUMAN (Copper chaperone for superoxide dismutase OS=Homo sapiens GN=CCS PE=1 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.012e-21 Identity = 66/168 (39.29%), Postives = 87/168 (51.79%), Query Frame = -1 Query: 24 VSAAVAEFKGPD-VFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNP--KIEGSVKEP---LGDLGTLVADEKGEAFFSGVKEVLRVADLIGRSIVVYGTED--------------KSDSGVTAAVIARSAGVGENYKKICACDGTIIWE 467 + AAVA GP V GVVR Q+ E IE GL PG HG ++++GDLT S G +NP G ++ GDLG + AD G A F E L+V D+IGRS+++ ED S + +IARSAG+ +N K+IC+CDG IWE Sbjct: 86 LGAAVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKVWDVIGRSLIIDEGEDDLGRGGHPLSKITGNSGERLACGIIARSAGLFQNPKQICSCDGLTIWE 253
BLAST of CN181747 vs. ExPASy Swiss-Prot
Match: CCS_RAT (Copper chaperone for superoxide dismutase OS=Rattus norvegicus GN=Ccs PE=1 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 1.726e-21 Identity = 67/168 (39.88%), Postives = 90/168 (53.57%), Query Frame = -1 Query: 24 VSAAVAEFKGPD-VFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNP--KIEGSVKEP---LGDLGTLVADEKGEAFFSGVKEVLRVADLIGRSIVVYGTED--------------KSDSGVTAAVIARSAGVGENYKKICACDGTIIWE 467 + AAVA +G V GVVR Q++ EL IE GL PG HG ++++GDLTK S G +NP G ++ GDLG + A+ G A F + L+V D+IGRS+VV ED S + +IARSAG+ +N K+IC+CDG IWE Sbjct: 86 LGAAVAIMEGSGTVQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTKDCSSCGDHFNPDGASHGGPQDTDRHRGDLGNVHAEASGRATFRIEDKQLKVWDVIGRSLVVDEGEDDLGRGGHPLSKVTGNSGKRLACGIIARSAGLFQNPKQICSCDGLTIWE 253
BLAST of CN181747 vs. ExPASy Swiss-Prot
Match: CCS_MOUSE (Copper chaperone for superoxide dismutase OS=Mus musculus GN=Ccs PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.461e-20 Identity = 64/168 (38.10%), Postives = 90/168 (53.57%), Query Frame = -1 Query: 24 VSAAVAEFKG-PDVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNP--KIEGSVKEP---LGDLGTLVADEKGEAFFSGVKEVLRVADLIGRSIVVYGTED--------------KSDSGVTAAVIARSAGVGENYKKICACDGTIIWE 467 + AAVA +G + GVVR Q++ EL IE GL PG HG ++++GDLT+ S G +NP G ++ GDLG + A+ G A F + L+V D+IGRS+V+ ED S + +IARSAG+ +N K+IC+CDG IWE Sbjct: 86 LGAAVAILEGCGSIQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTRDCNSCGDHFNPDGASHGGPQDTDRHRGDLGNVRAEAGGRATFRIEDKQLKVWDVIGRSLVIDEGEDDLGRGGHPLSKITGNSGKRLACGIIARSAGLFQNPKQICSCDGLTIWE 253
BLAST of CN181747 vs. ExPASy Swiss-Prot
Match: CCS1_DEBHA (Superoxide dismutase 1 copper chaperone OS=Debaryomyces hansenii GN=CCS1 PE=3 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 2.044e-14 Identity = 47/148 (31.76%), Postives = 78/148 (52.70%), Query Frame = -1 Query: 15 VFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPKIEGSVKEPLGD------LGTLVADEKGEAFFSG---VKEVLRVADLIGRSIVVYGTEDKSDSGVTAAVIARSAGVGENYKKICACDGTIIWESSS 431 V G+ R+ V ++ +GL G + SI + G+L+KGA+STG + P V +P+ + LG + + ++G + L ++DLIGRS+++ +DK+ VIARSAG EN K++C+C G +W+ S Sbjct: 94 VKGLARIVSVGANDLVVDLTVNGLPQGVYYPSIRKSGNLSKGALSTGECFYPLGPLEVDQPVSESTTINSLGAASPTVEEGSLYAGQGFLHADLNISDLIGRSVILSKLKDKTAPDSLCGVIARSAGAWENDKQVCSCSGKTVWQERS 241
BLAST of CN181747 vs. ExPASy Swiss-Prot
Match: SODCP_SPIOL (Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea GN=SODCP PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 8.587e-13 Identity = 48/125 (38.40%), Postives = 71/125 (56.80%), Query Frame = -1 Query: 111 AVAEFKGP-DVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNP--KIEGSVKEPL---GDLGTLVADEKGEAFFSGVKEVLRVA---DLIGRSIVVYGTEDKSDSG 458 AVA KG +V GVV L Q + + SGL+PGKHG+ ++EFGD T G +STG +NP K G+ ++ + GDLG +VA+ G A + V + + ++GR++VV+ ED G Sbjct: 73 AVAVLKGTSNVEGVVTLTQEDDGPTTVNVRISGLAPGKHGFHLHEFGDTTNGCMSTGPHFNPDKKTHGAPEDEVRHAGDLGNIVANTDGVAEATIVDNQIPLTGPNSVVGRALVVHELEDDLGKG 197
BLAST of CN181747 vs. ExPASy Swiss-Prot
Match: CCS1_YARLI (Superoxide dismutase 1 copper chaperone OS=Yarrowia lipolytica GN=CCS1 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.465e-12 Identity = 48/149 (32.21%), Postives = 70/149 (46.98%), Query Frame = -1 Query: 24 LVSAAVAEFKGPDVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPKIEGSVKEPLGDLGTLVADEKGEAFFSGVKEVLRVADLIGRSIVVYGTEDKSDSGVTAAVIARSAGVGENYKKICACDGTIIWE 470 ++ + E + + G+ R+ V+ LA I+ +GL G + SI GD++ S G VY V E G G+AF VK +++ LIGR + V + D VIARSAGV EN K +C+C G +WE Sbjct: 79 ILESHAPEDQAQPIKGLARIVSVSKTLALIDITLNGLPKGTYYPSIRTSGDISDAPQSLGGVYQALGSVEVNESDSASGLF----SGQAF---VKSETQISSLIGRGMAVSTSPDVVKPHALVGVIARSAGVWENDKTVCSCSGKTVWE 220
BLAST of CN181747 vs. ExPASy Swiss-Prot
Match: SODCP_MEDSA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Medicago sativa GN=SODCP PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.913e-12 Identity = 46/125 (36.80%), Postives = 68/125 (54.40%), Query Frame = -1 Query: 111 AVAEFKGPD-VFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPK--IEGSVKEPL---GDLGTLVADEKGEAFFSGVKEVLRVA---DLIGRSIVVYGTEDKSDSG 458 AVA KG V GVV L Q N + +GL+PG HG+ ++E+GD T G +STG +NP G+ ++ + GDLG ++AD G A + V + + +IGR++VV+ ED G Sbjct: 53 AVAVLKGNSTVEGVVTLTQENESPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNQLTHGAPEDEIRHAGDLGNIIADANGVAEATIVDNQIPLTGPNSVIGRALVVHELEDDLGKG 177
BLAST of CN181747 vs. ExPASy Swiss-Prot
Match: SODCP_PINSY (Superoxide dismutase [Cu-Zn], chloroplastic (Fragment) OS=Pinus sylvestris GN=SODCP PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 5.566e-12 Identity = 43/115 (37.39%), Postives = 67/115 (58.26%), Query Frame = -1 Query: 111 VFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPK--IEGSVKEPL---GDLGTLVADEKGEAFFSGVKEVLRVA---DLIGRSIVVYGTEDKSDSG 431 V GVV L+Q + ++ +GL+PGKHG+ ++EFGD T G +STG +NPK G+ ++ + GDLG +VA G A + V + ++ +IGR++VV+ ED G Sbjct: 2 VEGVVTLSQEDNGPTTVKVRLTGLTPGKHGFHLHEFGDTTNGCMSTGSHFNPKKLTHGAPEDDVRHAGDLGNIVAGSDGVAEATIVDNQIPLSGPDSVIGRALVVHELEDDLGKG 116
BLAST of CN181747 vs. ExPASy Swiss-Prot
Match: SODCP_VITVI (Superoxide dismutase [Cu-Zn], chloroplastic OS=Vitis vinifera GN=SODCP PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.619e-11 Identity = 45/125 (36.00%), Postives = 71/125 (56.80%), Query Frame = -1 Query: 111 AVAEFKGPD-VFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPK--IEGSVKEPL---GDLGTLVADEKGEAFFSGVKEVLRVAD---LIGRSIVVYGTEDKSDSG 458 AVA KG V GVV L+Q + + +GL+PG HG+ ++EFGD T G +STG +NP G+ ++ + GDLG ++A+ +G A + V + ++ +IGR++VV+ ED G Sbjct: 63 AVAVLKGTSSVEGVVTLSQEDDGPTTVSVRITGLTPGNHGFHLHEFGDTTNGCMSTGAHFNPNGMTHGAPEDDVRHAGDLGNIIANAEGVAEATIVDTQIPLSGPNAVIGRALVVHELEDDLGKG 187 The following BLAST results are available for this feature:
BLAST of CN181747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >CN181747 ID=CN181747; Name=CN181747; organism=Citrus sinensis; type=EST; length=473bpback to top |