CN181747

Overview
NameCN181747
Unique NameCN181747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181747 vs. ExPASy Swiss-Prot
Match: CCS_PIG (Copper chaperone for superoxide dismutase OS=Sus scrofa GN=CCS PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.012e-21
Identity = 67/168 (39.88%), Postives = 88/168 (52.38%), Query Frame = -1
Query:   24 VSAAVAEFKGPD-VFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNP--KIEGSVKEP---LGDLGTLVADEKGEAFFSGVKEVLRVADLIGRSIVVYGTED--------------KSDSGVTAAVIARSAGVGENYKKICACDGTIIWE 467
            + AAVA   G   V GVVR  Q+  E   IE    GL PG HG  +++FGDLT+   S G  +NP     G  ++     GDLG + AD  G A F    E+L+V D+IGRS+V+   ED               S   +   +IARSAG+ +N K+IC+CDG  IWE
Sbjct:   86 LEAAVAILGGSGPVQGVVRFLQLTPERCLIEGTIDGLKPGLHGLHVHQFGDLTRNCNSCGDHFNPDGMSHGGPQDSDRHRGDLGNVCADADGRAVFRMEDELLKVWDVIGRSLVIDEGEDDLGRGGHPLSKITGNSGERLACGIIARSAGLFQNPKQICSCDGLTIWE 253          
BLAST of CN181747 vs. ExPASy Swiss-Prot
Match: CCS_HUMAN (Copper chaperone for superoxide dismutase OS=Homo sapiens GN=CCS PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.012e-21
Identity = 66/168 (39.29%), Postives = 87/168 (51.79%), Query Frame = -1
Query:   24 VSAAVAEFKGPD-VFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNP--KIEGSVKEP---LGDLGTLVADEKGEAFFSGVKEVLRVADLIGRSIVVYGTED--------------KSDSGVTAAVIARSAGVGENYKKICACDGTIIWE 467
            + AAVA   GP  V GVVR  Q+  E   IE    GL PG HG  ++++GDLT    S G  +NP     G  ++     GDLG + AD  G A F    E L+V D+IGRS+++   ED               S   +   +IARSAG+ +N K+IC+CDG  IWE
Sbjct:   86 LGAAVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKVWDVIGRSLIIDEGEDDLGRGGHPLSKITGNSGERLACGIIARSAGLFQNPKQICSCDGLTIWE 253          
BLAST of CN181747 vs. ExPASy Swiss-Prot
Match: CCS_RAT (Copper chaperone for superoxide dismutase OS=Rattus norvegicus GN=Ccs PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.726e-21
Identity = 67/168 (39.88%), Postives = 90/168 (53.57%), Query Frame = -1
Query:   24 VSAAVAEFKGPD-VFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNP--KIEGSVKEP---LGDLGTLVADEKGEAFFSGVKEVLRVADLIGRSIVVYGTED--------------KSDSGVTAAVIARSAGVGENYKKICACDGTIIWE 467
            + AAVA  +G   V GVVR  Q++ EL  IE    GL PG HG  ++++GDLTK   S G  +NP     G  ++     GDLG + A+  G A F    + L+V D+IGRS+VV   ED               S   +   +IARSAG+ +N K+IC+CDG  IWE
Sbjct:   86 LGAAVAIMEGSGTVQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTKDCSSCGDHFNPDGASHGGPQDTDRHRGDLGNVHAEASGRATFRIEDKQLKVWDVIGRSLVVDEGEDDLGRGGHPLSKVTGNSGKRLACGIIARSAGLFQNPKQICSCDGLTIWE 253          
BLAST of CN181747 vs. ExPASy Swiss-Prot
Match: CCS_MOUSE (Copper chaperone for superoxide dismutase OS=Mus musculus GN=Ccs PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.461e-20
Identity = 64/168 (38.10%), Postives = 90/168 (53.57%), Query Frame = -1
Query:   24 VSAAVAEFKG-PDVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNP--KIEGSVKEP---LGDLGTLVADEKGEAFFSGVKEVLRVADLIGRSIVVYGTED--------------KSDSGVTAAVIARSAGVGENYKKICACDGTIIWE 467
            + AAVA  +G   + GVVR  Q++ EL  IE    GL PG HG  ++++GDLT+   S G  +NP     G  ++     GDLG + A+  G A F    + L+V D+IGRS+V+   ED               S   +   +IARSAG+ +N K+IC+CDG  IWE
Sbjct:   86 LGAAVAILEGCGSIQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTRDCNSCGDHFNPDGASHGGPQDTDRHRGDLGNVRAEAGGRATFRIEDKQLKVWDVIGRSLVIDEGEDDLGRGGHPLSKITGNSGKRLACGIIARSAGLFQNPKQICSCDGLTIWE 253          
BLAST of CN181747 vs. ExPASy Swiss-Prot
Match: CCS1_DEBHA (Superoxide dismutase 1 copper chaperone OS=Debaryomyces hansenii GN=CCS1 PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.044e-14
Identity = 47/148 (31.76%), Postives = 78/148 (52.70%), Query Frame = -1
Query:   15 VFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPKIEGSVKEPLGD------LGTLVADEKGEAFFSG---VKEVLRVADLIGRSIVVYGTEDKSDSGVTAAVIARSAGVGENYKKICACDGTIIWESSS 431
            V G+ R+  V      ++   +GL  G +  SI + G+L+KGA+STG  + P     V +P+ +      LG      +  + ++G   +   L ++DLIGRS+++   +DK+       VIARSAG  EN K++C+C G  +W+  S
Sbjct:   94 VKGLARIVSVGANDLVVDLTVNGLPQGVYYPSIRKSGNLSKGALSTGECFYPLGPLEVDQPVSESTTINSLGAASPTVEEGSLYAGQGFLHADLNISDLIGRSVILSKLKDKTAPDSLCGVIARSAGAWENDKQVCSCSGKTVWQERS 241          
BLAST of CN181747 vs. ExPASy Swiss-Prot
Match: SODCP_SPIOL (Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea GN=SODCP PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 8.587e-13
Identity = 48/125 (38.40%), Postives = 71/125 (56.80%), Query Frame = -1
Query:  111 AVAEFKGP-DVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNP--KIEGSVKEPL---GDLGTLVADEKGEAFFSGVKEVLRVA---DLIGRSIVVYGTEDKSDSG 458
            AVA  KG  +V GVV L Q +     +    SGL+PGKHG+ ++EFGD T G +STG  +NP  K  G+ ++ +   GDLG +VA+  G A  + V   + +     ++GR++VV+  ED    G
Sbjct:   73 AVAVLKGTSNVEGVVTLTQEDDGPTTVNVRISGLAPGKHGFHLHEFGDTTNGCMSTGPHFNPDKKTHGAPEDEVRHAGDLGNIVANTDGVAEATIVDNQIPLTGPNSVVGRALVVHELEDDLGKG 197          
BLAST of CN181747 vs. ExPASy Swiss-Prot
Match: CCS1_YARLI (Superoxide dismutase 1 copper chaperone OS=Yarrowia lipolytica GN=CCS1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.465e-12
Identity = 48/149 (32.21%), Postives = 70/149 (46.98%), Query Frame = -1
Query:   24 LVSAAVAEFKGPDVFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPKIEGSVKEPLGDLGTLVADEKGEAFFSGVKEVLRVADLIGRSIVVYGTEDKSDSGVTAAVIARSAGVGENYKKICACDGTIIWE 470
            ++ +   E +   + G+ R+  V+  LA I+   +GL  G +  SI   GD++    S G VY       V E     G       G+AF   VK   +++ LIGR + V  + D         VIARSAGV EN K +C+C G  +WE
Sbjct:   79 ILESHAPEDQAQPIKGLARIVSVSKTLALIDITLNGLPKGTYYPSIRTSGDISDAPQSLGGVYQALGSVEVNESDSASGLF----SGQAF---VKSETQISSLIGRGMAVSTSPDVVKPHALVGVIARSAGVWENDKTVCSCSGKTVWE 220          
BLAST of CN181747 vs. ExPASy Swiss-Prot
Match: SODCP_MEDSA (Superoxide dismutase [Cu-Zn], chloroplastic OS=Medicago sativa GN=SODCP PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.913e-12
Identity = 46/125 (36.80%), Postives = 68/125 (54.40%), Query Frame = -1
Query:  111 AVAEFKGPD-VFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPK--IEGSVKEPL---GDLGTLVADEKGEAFFSGVKEVLRVA---DLIGRSIVVYGTEDKSDSG 458
            AVA  KG   V GVV L Q N     +    +GL+PG HG+ ++E+GD T G +STG  +NP     G+ ++ +   GDLG ++AD  G A  + V   + +     +IGR++VV+  ED    G
Sbjct:   53 AVAVLKGNSTVEGVVTLTQENESPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNQLTHGAPEDEIRHAGDLGNIIADANGVAEATIVDNQIPLTGPNSVIGRALVVHELEDDLGKG 177          
BLAST of CN181747 vs. ExPASy Swiss-Prot
Match: SODCP_PINSY (Superoxide dismutase [Cu-Zn], chloroplastic (Fragment) OS=Pinus sylvestris GN=SODCP PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.566e-12
Identity = 43/115 (37.39%), Postives = 67/115 (58.26%), Query Frame = -1
Query:  111 VFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPK--IEGSVKEPL---GDLGTLVADEKGEAFFSGVKEVLRVA---DLIGRSIVVYGTEDKSDSG 431
            V GVV L+Q +     ++   +GL+PGKHG+ ++EFGD T G +STG  +NPK    G+ ++ +   GDLG +VA   G A  + V   + ++    +IGR++VV+  ED    G
Sbjct:    2 VEGVVTLSQEDNGPTTVKVRLTGLTPGKHGFHLHEFGDTTNGCMSTGSHFNPKKLTHGAPEDDVRHAGDLGNIVAGSDGVAEATIVDNQIPLSGPDSVIGRALVVHELEDDLGKG 116          
BLAST of CN181747 vs. ExPASy Swiss-Prot
Match: SODCP_VITVI (Superoxide dismutase [Cu-Zn], chloroplastic OS=Vitis vinifera GN=SODCP PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.619e-11
Identity = 45/125 (36.00%), Postives = 71/125 (56.80%), Query Frame = -1
Query:  111 AVAEFKGPD-VFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTKGAVSTGRVYNPK--IEGSVKEPL---GDLGTLVADEKGEAFFSGVKEVLRVAD---LIGRSIVVYGTEDKSDSG 458
            AVA  KG   V GVV L+Q +     +    +GL+PG HG+ ++EFGD T G +STG  +NP     G+ ++ +   GDLG ++A+ +G A  + V   + ++    +IGR++VV+  ED    G
Sbjct:   63 AVAVLKGTSSVEGVVTLSQEDDGPTTVSVRITGLTPGNHGFHLHEFGDTTNGCMSTGAHFNPNGMTHGAPEDDVRHAGDLGNIIANAEGVAEATIVDTQIPLSGPNAVIGRALVVHELEDDLGKG 187          
The following BLAST results are available for this feature:
BLAST of CN181747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
CCS_PIG1.012e-2139.88Copper chaperone for superoxide dismutase OS=Sus s... [more]
CCS_HUMAN1.012e-2139.29Copper chaperone for superoxide dismutase OS=Homo ... [more]
CCS_RAT1.726e-2139.88Copper chaperone for superoxide dismutase OS=Rattu... [more]
CCS_MOUSE1.461e-2038.10Copper chaperone for superoxide dismutase OS=Mus m... [more]
CCS1_DEBHA2.044e-1431.76Superoxide dismutase 1 copper chaperone OS=Debaryo... [more]
SODCP_SPIOL8.587e-1338.40Superoxide dismutase [Cu-Zn], chloroplastic OS=Spi... [more]
CCS1_YARLI1.465e-1232.21Superoxide dismutase 1 copper chaperone OS=Yarrowi... [more]
SODCP_MEDSA1.913e-1236.80Superoxide dismutase [Cu-Zn], chloroplastic OS=Med... [more]
SODCP_PINSY5.566e-1237.39Superoxide dismutase [Cu-Zn], chloroplastic (Fragm... [more]
SODCP_VITVI1.619e-1136.00Superoxide dismutase [Cu-Zn], chloroplastic OS=Vit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G17_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181747 ID=CN181747; Name=CN181747; organism=Citrus sinensis; type=EST; length=473bp
GCGACGAAATCATTGCTACTTGACTCCCAAATGATGGTTCCATCACAAGC
GCAAATCTTTTTGTAGTTCTCACCAACTCCTGCACTTCTAGCAATTACCG
CTGCTGTGACACCTGAATCTGATTTATCTTCAGTACCATATACCACAATG
GATCGCCCAATCAGATCAGCAACTCTCAGCACCTCTTTGACACCTGAGAA
GAAGGCCTCACCTTTCTCATCAGCAACTAGTGTTCCCAGGTCACCAAGTG
GCTCTTTCACACTTCCTTCAATCTTTGGATTATAAACTCTGCCAGTGCTC
ACTGCACCTTTTGTCAGATCACCAAATTCATTAATAGACCAGCCATGTTT
TCCAGGTGAAAGCCCACTAAAGTTGGCTTCAATCCTAGCCAATTCCATAT
TCACTTGAGCCAAGCGAACCACACCAAATACATCTGGACCTTTGAATTCA
GCAACGGCAGCGGAGACTAAAAA
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