CN181746

Overview
NameCN181746
Unique NameCN181746
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2280 contig Csv1_Contig2280:1..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4)

HSP 1 Score: 333.183 bits (853), Expect = 7.320e-91
Identity = 159/198 (80.30%), Postives = 172/198 (86.87%), Query Frame = 2
Query:   59 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652
            MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDP+KPCRLT+FLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPP+         KTPRGLRSLCTVWAQHL+EE+RRRFYKNW               ET++GKKDIQ+QLEKMKKYC+VIRVLAHTQIRKMKGLKQKKAHL EIQ+NGG +A+KVD+A
Sbjct:    1 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYKNWAKSKKKAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAHLNEIQINGGDIAKKVDYA 198          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5)

HSP 1 Score: 321.627 bits (823), Expect = 2.204e-87
Identity = 155/199 (77.89%), Postives = 169/199 (84.92%), Query Frame = 2
Query:   59 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAY 655
            MSHRKFEHPRHGSLGFLPRKRA+RHRGKVKAFPKDD +KPC+ TAF+GYKAGMTHIVR+VEKPGSKLHKKETCEAVTIIETP +         KTPRGLRSL TVWAQHL+EEVRRRFYKNW               +++DGKK IQAQLEKMKKY TVIRVLAHTQIRKMKGLKQKKAH+MEIQ+NGG++AQKVDFAY
Sbjct:    1 MSHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPAMVVVGVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWAKSKKKAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQINGGTIAQKVDFAY 199          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2)

HSP 1 Score: 317.005 bits (811), Expect = 5.429e-86
Identity = 150/199 (75.38%), Postives = 168/199 (84.42%), Query Frame = 2
Query:   59 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFAY 655
            MSHRKFEHPRHGSLGFLPRKR+SRHRGKVK+FPKDD SKPC LT+F+GYKAGMTHIVR+VEKPGSKLHKKETCEAVTIIETPPL         KTPRGLRSL +VWAQHL+EEVRRRFYKNWC              ++D GKK+IQ QLEKMKKY +++RV+AHTQIRKMKGLKQKKAHLMEIQ+NGG++A KVD+ Y
Sbjct:    1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGY 199          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_ASPFU (60S ribosomal protein L3 OS=Aspergillus fumigatus GN=rpl3 PE=1 SV=2)

HSP 1 Score: 263.462 bits (672), Expect = 7.123e-70
Identity = 132/198 (66.67%), Postives = 153/198 (77.27%), Query Frame = 2
Query:   59 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652
            MSHRK+E PRHGSL FLPRKRA+RHRGKVK+FPKDDP KP  LTA +GYKAGMT +VRD+++PG+K+HKKE  EAVTIIETPPL         +TPRGLRSL TVWA+HL++EV+RRFYKNW                 ++G   I  +LE++KKYCTV+RVLAHTQIRK   LKQKKAHLMEIQVNGGSVA KVDFA
Sbjct:    1 MSHRKYEAPRHGSLAFLPRKRAARHRGKVKSFPKDDPKKPVHLTASMGYKAGMTTVVRDLDRPGAKMHKKEIVEAVTIIETPPLVAVGVVGYIETPRGLRSLTTVWAEHLSDEVKRRFYKNWYKSKKKAFTKYAKKHAEENG-ASITRELERIKKYCTVVRVLAHTQIRKTP-LKQKKAHLMEIQVNGGSVADKVDFA 196          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3B_SCHPO (60S ribosomal protein L3-B OS=Schizosaccharomyces pombe GN=rpl3b PE=2 SV=2)

HSP 1 Score: 261.922 bits (668), Expect = 2.073e-69
Identity = 133/198 (67.17%), Postives = 153/198 (77.27%), Query Frame = 2
Query:   59 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652
            MSH KFE PRHGSLGFLPRKRASR RGKVKAFPKDD SKP  LTAFLGYKAGMTHIVRD+++PGSK+HK+E  EAVTIIETPP+         +TPRGLRSL TVWA+HL+EEV+RRFYKNW               +  +  + I  +LE++KKYC+V+RVLAHTQIRK   L QKKAHLMEIQVNGGSVA KV++A
Sbjct:    1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGSKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNW--FKSKKKAFTKYAKKYAESTQSINRELERIKKYCSVVRVLAHTQIRKTP-LAQKKAHLMEIQVNGGSVADKVEWA 195          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3A_SCHPO (60S ribosomal protein L3-A OS=Schizosaccharomyces pombe GN=rpl3a PE=1 SV=2)

HSP 1 Score: 261.536 bits (667), Expect = 2.707e-69
Identity = 132/198 (66.67%), Postives = 153/198 (77.27%), Query Frame = 2
Query:   59 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652
            MSH KFE PRHGSLGFLPRKRASR RGKVKAFPKDD SKP  LTAFLGYKAGMTHIVRD+++PGSK+HK+E  EAVT+IETPP+         +TPRGLRSL TVWA+HL+EEV+RRFYKNW               +  +  + I  +LE++KKYC+V+RVLAHTQIRK   L QKKAHLMEIQVNGGSVA KV++A
Sbjct:    1 MSHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGSKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNW--FKSKKKAFTKYAKKYAESTQSINRELERIKKYCSVVRVLAHTQIRKTP-LAQKKAHLMEIQVNGGSVADKVEWA 195          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_HUMAN (60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2)

HSP 1 Score: 259.996 bits (663), Expect = 7.876e-69
Identity = 125/198 (63.13%), Postives = 154/198 (77.78%), Query Frame = 2
Query:   59 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652
            MSHRKF  PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE  EAVTI+ETPP+         +TPRGLR+  TV+A+H+++E +RRFYKNW               + +DGKK ++     MKKYC VIRV+AHTQ+R +  L+QKKAHLMEIQVNGG+VA+K+D+A
Sbjct:    1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLP-LRQKKAHLMEIQVNGGTVAEKLDWA 197          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_RAT (60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3)

HSP 1 Score: 258.455 bits (659), Expect = 2.292e-68
Identity = 124/198 (62.63%), Postives = 153/198 (77.27%), Query Frame = 2
Query:   59 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652
            MSHRKF  PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE  EAVTI+ETPP+         +TPRGLR+  TV+A+H+++E +RRFYKNW               + D GKK ++     MKKYC VIR++AHTQ+R +  L+QKKAHLMEIQVNGG+VA+K+D+A
Sbjct:    1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLP-LRQKKAHLMEIQVNGGTVAEKLDWA 197          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_MACFA (60S ribosomal protein L3 OS=Macaca fascicularis GN=RPL3 PE=2 SV=3)

HSP 1 Score: 257.299 bits (656), Expect = 5.105e-68
Identity = 124/198 (62.63%), Postives = 153/198 (77.27%), Query Frame = 2
Query:   59 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652
            MSHRKF  PRHGSLGFLPRKR+SRHRGKVK+FPKDDPSKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE   AVTI+ETPP+         +TPRGLR+  TV+A+H+++E +RRFYKNW               + +DGKK ++     MKKYC VIRV+AHTQ+R +  L+QKKAHLMEIQVNGG+VA+K+D+A
Sbjct:    1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVVAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLP-LRQKKAHLMEIQVNGGTVAEKLDWA 197          
BLAST of CN181746 vs. ExPASy Swiss-Prot
Match: RL3_MOUSE (60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=2)

HSP 1 Score: 255.373 bits (651), Expect = 1.940e-67
Identity = 123/198 (62.12%), Postives = 152/198 (76.77%), Query Frame = 2
Query:   59 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETPPLXXXXXXXXXKTPRGLRSLCTVWAQHLNEEVRRRFYKNWCXXXXXXXXXXXXXXETDDGKKDIQAQLEKMKKYCTVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSVAQKVDFA 652
            MSHRKF  PRHGSLGFLPRKR+SRHRGKVK+FPKDD SKP  LTAFLGYKAGMTHIVR+V++PGSK++KKE  EAVTI+ETPP+         +TPRGLR+  TV+A+H+++E +RRFYKNW               + D GKK ++     MKKYC VIR++AHTQ+R +  L+QKKAHLMEIQVNGG+VA+K+D+A
Sbjct:    1 MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDASKPVHLTAFLGYKAGMTHIVREVDRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMRLLP-LRQKKAHLMEIQVNGGTVAEKLDWA 197          
The following BLAST results are available for this feature:
BLAST of CN181746 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RL32_ARATH7.320e-9180.3060S ribosomal protein L3-2 OS=Arabidopsis thaliana... [more]
RL31_ARATH2.204e-8777.8960S ribosomal protein L3-1 OS=Arabidopsis thaliana... [more]
RL3_ORYSJ5.429e-8675.3860S ribosomal protein L3 OS=Oryza sativa subsp. ja... [more]
RL3_ASPFU7.123e-7066.6760S ribosomal protein L3 OS=Aspergillus fumigatus ... [more]
RL3B_SCHPO2.073e-6967.1760S ribosomal protein L3-B OS=Schizosaccharomyces ... [more]
RL3A_SCHPO2.707e-6966.6760S ribosomal protein L3-A OS=Schizosaccharomyces ... [more]
RL3_HUMAN7.876e-6963.1360S ribosomal protein L3 OS=Homo sapiens GN=RPL3 P... [more]
RL3_RAT2.292e-6862.6360S ribosomal protein L3 OS=Rattus norvegicus GN=R... [more]
RL3_MACFA5.105e-6862.6360S ribosomal protein L3 OS=Macaca fascicularis GN... [more]
RL3_MOUSE1.940e-6762.1260S ribosomal protein L3 OS=Mus musculus GN=Rpl3 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001G16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181746 ID=CN181746; Name=CN181746; organism=Citrus sinensis; type=EST; length=655bp
GAGGATTTGCTATCACTTCGCTCCTTCAGCAACGCAAGAGTTCTAAGTGC
CGAGTAGGATGTCTCATCGTAAGTTTGAACACCCAAGACATGGTTCTTTA
GGATTTCTTCCAAGGAAGAGAGCATCCCGCCACAGAGGAAAAGTGAAGGC
CTTTCCCAAGGATGACCCATCAAAACCATGCAGATTAACTGCTTTTTTAG
GCTACAAAGCTGGAATGACCCATATTGTCAGAGATGTTGAAAAGCCAGGA
TCAAAGCTGCACAAGAAAGAAACATGTGAAGCAGTAACTATTATTGAAAC
ACCACCCCTGGTGGTTGTTGGGGTCGTTGGTTATGTCAAGACGCCCCGTG
GGCTTCGTTCTCTCTGCACTGTTTGGGCTCAGCATCTCAATGAGGAGGTT
AGGAGAAGGTTTTACAAGAACTGGTGCAAATCGAAGAAGAAGGCCTTCAC
TAAGTATACAAAGAAGTATGAAACTGATGATGGAAAGAAAGACATTCAGG
CTCAGCTGGAGAAAATGAAGAAATACTGCACCGTGATTCGTGTTTTGGCC
CATACCCAGATCAGAAAAATGAAGGGACTGAAGCAGAAGAAGGCCCATCT
GATGGAGATCCAGGTCAATGGTGGATCAGTTGCCCAGAAAGTTGACTTTG
CTTAT
back to top