CN181745

Overview
NameCN181745
Unique NameCN181745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8536 contig Csv1_Contig8536:32..574. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 5.629e-55
Identity = 100/117 (85.47%), Postives = 109/117 (93.16%), Query Frame = -3
Query:  191 NGYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLKA 541
            NGYH RTEMNKK+YK+GK+ QESH+A TEFDRTEKDITPMGGFPHYGVV  DYL+IKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQ T EK +++G+LKA
Sbjct:  273 NGYHHRTEMNKKVYKIGKSGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLKA 389          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4)

HSP 1 Score: 205.682 bits (522), Expect = 1.174e-52
Identity = 94/114 (82.46%), Postives = 106/114 (92.98%), Query Frame = -3
Query:  200 NGYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGR 541
            NGYH RTEMNKK+Y++GK  QE+HSAMTE+DRTEKDITPMGGFPHYG+V EDYL+IKGCCVGPKKRVVTLRQ+LLKQTSRLA+EEIKLKFID +S  GHGRFQ +QEKAK+YGR
Sbjct:  273 NGYHHRTEMNKKVYRVGKVGQETHSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGR 386          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5)

HSP 1 Score: 197.208 bits (500), Expect = 4.175e-50
Identity = 90/115 (78.26%), Postives = 104/115 (90.43%), Query Frame = -3
Query:  197 NGYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRL 541
            NGYH RTE+NKKIY+LGK   E+H+AMTE+DRTEKD+TPMGGFPHYG+V +DYL+IKGCCVGPKKRVVTLRQSLL QTSRLALEEIKLKFIDT+S FGHGRFQ + EK ++Y R+
Sbjct:  273 NGYHHRTELNKKIYRLGKVGTEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRV 387          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_DROME (60S ribosomal protein L3 OS=Drosophila melanogaster GN=RpL3 PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 8.166e-38
Identity = 74/121 (61.16%), Postives = 91/121 (75.21%), Query Frame = -3
Query:  194 GYHPRTEMNKKIYKLGKASQES------HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 538
            GYH RTE+NKKIY++G            ++A TE+D T+K ITPMGGFPHYG VN D+++IKGCC+G KKR++TLR+SLLK T R ALE+IKLKFIDTSSK GHGRFQ   +K  + G LK
Sbjct:  273 GYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 393          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.179e-36
Identity = 71/118 (60.17%), Postives = 92/118 (77.97%), Query Frame = -3
Query:  194 GYHPRTEMNKKIYKLGKA---SQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 538
            GYH RTE+NKKIY+LGK+    +   +  T++D TEK + PMGGFPHYG+VN+D+++I+GCCVG KKR +TLR+SL+ QT R A E+I LK+IDTSSKFGHGRFQ   EK  + G+LK
Sbjct:  273 GYHHRTEVNKKIYRLGKSCLTEEGKKNGGTDYDITEKSVNPMGGFPHYGLVNQDFVMIRGCCVGSKKRPITLRKSLIVQTKRFAHEKINLKWIDTSSKFGHGRFQTHAEKRAFMGKLK 390          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_CAEEL (60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.104e-34
Identity = 68/121 (56.20%), Postives = 94/121 (77.69%), Query Frame = -3
Query:  185 GYHPRTEMNKKIYKLGKAS---QESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLKA*F 538
            G+H RT +N KIY++GK++   +  ++  TEFD T+K ITPMGGFP YG+VN+DY++++G  +GPKKR++TLR+SL+ QT R+A E+I LK+IDTSSK GHGRFQ T EK  + G+LK  F
Sbjct:  273 GFHHRTIINNKIYRIGKSALTEEGKNNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDF 393          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3L_BOVIN (60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 1.883e-34
Identity = 70/121 (57.85%), Postives = 88/121 (72.73%), Query Frame = -3
Query:  194 GYHPRTEMNKKIYKLGKASQES------HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 538
            GYH RTE+NKKIY++G+           ++A T +D T+K ITP+GGFPHYG VN D++++KGC  G KKRV+TLR+SLL   SR ALE I+LKFIDT+SKFGHGRFQ  QEK  + G  K
Sbjct:  273 GYHHRTELNKKIYRIGRGLHMEDGKVVKNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQALENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_ASHGO (60S ribosomal protein L3 OS=Ashbya gossypii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.459e-34
Identity = 70/116 (60.34%), Postives = 87/116 (75.00%), Query Frame = -3
Query:  194 NGYHPRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 541
            NGYH RT +N K+Y++GK   E ++A TEFDRT+K ITPMGGF HYG VN D++++KG   G +KRVVTLR+SL   TSR ALEE+ LK+IDT+SKFG GRFQ   EK  + G LK
Sbjct:  271 NGYHHRTSINHKVYRIGKGGDEGNAA-TEFDRTKKTITPMGGFVHYGAVNNDFVMVKGSIPGTRKRVVTLRKSLYTSTSRRALEEVNLKWIDTASKFGKGRFQTPAEKHAFMGTLK 385          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_DICDI (60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 7.154e-34
Identity = 68/120 (56.67%), Postives = 86/120 (71.67%), Query Frame = -3
Query:  191 GYHPRTEMNKKIYKLGKASQES----HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLKA 538
            GYH R E NKKIY++G+A  E      +  TEFD TEK I PMGGF HYG+V  ++L++KGC  GP+KR +TLR+S+  QT R ALE+I LKFIDTSSKFGHG  Q  ++K KY+G  K+
Sbjct:  274 GYHHRVERNKKIYRIGQAQPEDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKKS 393          
BLAST of CN181745 vs. ExPASy Swiss-Prot
Match: RL3_CAEBR (60S ribosomal protein L3 OS=Caenorhabditis briggsae GN=rpl-3 PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 9.343e-34
Identity = 67/121 (55.37%), Postives = 93/121 (76.86%), Query Frame = -3
Query:  185 GYHPRTEMNKKIYKLGKAS---QESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLKA*F 538
            G+H RT +N KIY++GK++   +  ++  TEFD T+K I PMGGFP YG+VN+DY++++G  +GPKKR++TLR+SL+ QT R+A E+I LK+IDTSSK GHGRFQ T EK  + G+LK  F
Sbjct:  273 GFHHRTIINNKIYRIGKSALTEEGKNNGSTEFDLTQKTINPMGGFPRYGLVNQDYVMLRGAILGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDF 393          
The following BLAST results are available for this feature:
BLAST of CN181745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
RL3_ORYSJ5.629e-5585.4760S ribosomal protein L3 OS=Oryza sativa subsp. ja... [more]
RL32_ARATH1.174e-5282.4660S ribosomal protein L3-2 OS=Arabidopsis thaliana... [more]
RL31_ARATH4.175e-5078.2660S ribosomal protein L3-1 OS=Arabidopsis thaliana... [more]
RL3_DROME8.166e-3861.1660S ribosomal protein L3 OS=Drosophila melanogaste... [more]
RL3_TOXCA1.179e-3660.1760S ribosomal protein L3 OS=Toxocara canis GN=RPL3... [more]
RL3_CAEEL1.104e-3456.2060S ribosomal protein L3 OS=Caenorhabditis elegans... [more]
RL3L_BOVIN1.883e-3457.8560S ribosomal protein L3-like OS=Bos taurus GN=RPL... [more]
RL3_ASHGO2.459e-3460.3460S ribosomal protein L3 OS=Ashbya gossypii GN=RPL... [more]
RL3_DICDI7.154e-3456.6760S ribosomal protein L3 OS=Dictyostelium discoide... [more]
RL3_CAEBR9.343e-3455.3760S ribosomal protein L3 OS=Caenorhabditis briggsa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G16_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181745 ID=CN181745; Name=CN181745; organism=Citrus sinensis; type=EST; length=543bp
TAAAGCCAAAAATACCGTAAGATGTATTAACGCGCAAAAAAGAAACCATG
CACAAATGAAGTTTCAAAGAACTGCCAATGTAGCCATAGCCATATTAATT
CAAAATAGAGACTAGAATGACCAACAATCTTAGATGTTCAAAACTACCCT
GAAACCAAAGGCAATCTCTTTTTCAACTTGGCCAAAATCAAGCCTTGAGC
CTTCCATAGTACTTGGCCTTCTCCTGAGTTCTCTGGAACCGACCATGGCC
GAACTTGGAGGATGTGTCAATGAACTTGAGCTTAATCTCCTCCAATGCAA
GCCTAGACGTCTGCTTCAGTAGGGACTGCCTCAAGGTCACAACACGCTTC
TTAGGTCCAACACAGCATCCCTTGATCAGCAGGTAATCTTCATTGACTAC
ACCATAGTGGGGGAAGCCTCCCATTGGGGTGATATCCTTCTCCGTCCTGT
CAAATTCAGTCATGGCAGAATGAGACTCCTGGCTGGCCTTCCCAAGCTTG
TAAATTTTCTTGTTCATCTCTGTACGGGGATGGTAGCCGTTCT
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