CN188702
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS16_GOSHI (40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1) HSP 1 Score: 208.764 bits (530), Expect = 1.098e-53 Identity = 106/118 (89.83%), Postives = 108/118 (91.53%), Query Frame = -2 Query: 130 RGLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 483 RGLIKINGCPIELVEPEILRFKA EPILL GR F GVDMRIRVKGGGHTSQ+YAIRQSIAKALVAFYQKYVDE SKKEIKDILV YDRTL+VAD RRCEPKKF GRGARARFQKS R Sbjct: 28 RGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 145
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS16_LUPPO (40S ribosomal protein S16 OS=Lupinus polyphyllus GN=RPS16 PE=2 SV=1) HSP 1 Score: 207.223 bits (526), Expect = 3.196e-53 Identity = 106/119 (89.08%), Postives = 109/119 (91.60%), Query Frame = -2 Query: 130 ARGLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 486 A GLIKING PIELVEPEILRFKAFEPILL G+ F GVDMRIRVKGGGHTSQ+YAIRQSIAKALVAFYQKYVDE SKKEIKDILVRYDRTL+VAD RRCEPKKF GRGARARFQKS R Sbjct: 27 AAGLIKINGSPIELVEPEILRFKAFEPILLLGKSRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 145
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS161_ARATH (40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1) HSP 1 Score: 200.29 bits (508), Expect = 3.907e-51 Identity = 98/117 (83.76%), Postives = 107/117 (91.45%), Query Frame = -2 Query: 130 GLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 480 GLIK+NGCPIEL +PEILRFK FEPILL G+H F GV+MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDE SKKEIKDILVRYDRTL+VAD RRCEPKKF GRGAR+R+QKS R Sbjct: 30 GLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS163_ARATH (40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1) HSP 1 Score: 199.904 bits (507), Expect = 5.102e-51 Identity = 97/117 (82.91%), Postives = 107/117 (91.45%), Query Frame = -2 Query: 130 GLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 480 GLIK+NGCPIEL +PEILRFK FEP+LL G+H F GV+MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDE SKKEIKDILVRYDRTL+VAD RRCEPKKF GRGAR+R+QKS R Sbjct: 30 GLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS16_FRIAG (40S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 6.664e-51 Identity = 98/118 (83.05%), Postives = 109/118 (92.37%), Query Frame = -2 Query: 130 RGLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 483 RGLIK+NG PIELV+PEILR+KAFEPILL GRH F GVDMRIRV+GGG TSQ+YAIRQSIAKALVA+YQKYVDE +KKE+KDIL+RYDRTL+VAD RRCEPKKF GRGAR+RFQKS R Sbjct: 28 RGLIKVNGSPIELVKPEILRYKAFEPILLLGRHRFVGVDMRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 145
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS16_ORYSJ (40S ribosomal protein S16 OS=Oryza sativa subsp. japonica GN=RPS16A PE=2 SV=1) HSP 1 Score: 189.504 bits (480), Expect = 6.896e-48 Identity = 93/118 (78.81%), Postives = 103/118 (87.29%), Query Frame = -2 Query: 130 RGLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 483 RGLIK+NG PIEL+ PE+LR KAFEPILL GR F +DMRIRV+GGG TSQ+YAIRQ+IAKALVA+YQKYVDE SKKE+KDI RYDRTL+VAD RRCEPKKF GRGARARFQKS R Sbjct: 32 RGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS16_ORYSI (40S ribosomal protein S16 OS=Oryza sativa subsp. indica GN=RPS16A PE=2 SV=1) HSP 1 Score: 189.504 bits (480), Expect = 6.896e-48 Identity = 93/118 (78.81%), Postives = 103/118 (87.29%), Query Frame = -2 Query: 130 RGLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 483 RGLIK+NG PIEL+ PE+LR KAFEPILL GR F +DMRIRV+GGG TSQ+YAIRQ+IAKALVA+YQKYVDE SKKE+KDI RYDRTL+VAD RRCEPKKF GRGARARFQKS R Sbjct: 32 RGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS16_TORRU (40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 1.536e-47 Identity = 95/118 (80.51%), Postives = 107/118 (90.68%), Query Frame = -2 Query: 130 RGLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 483 RGLI++ PIELVEPEILR+KAFEP+LL GR F GVDMRIRVKGGG+TSQ+YAIRQSIAKALVA++QKYVDE SKKEIKD+L+RYDRTL+VAD RRCEPKKF GRGAR+RFQKS R Sbjct: 26 RGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFAGVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 142
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS162_ARATH (40S ribosomal protein S16-2 OS=Arabidopsis thaliana GN=RPS16B PE=2 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 5.838e-47 Identity = 92/117 (78.63%), Postives = 103/117 (88.03%), Query Frame = -2 Query: 130 GLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 480 G+IK+NG PIEL +PEILRFK FEP+LL G+H F GVDMRIR GGG+TS++YAIRQSIAKALVA+YQKYVDE SKKEIKDIL+RYDRTL+VAD RRCE KKF G GARARFQKS R Sbjct: 30 GMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVDMRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKFGGPGARARFQKSYR 146
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS16_RAT (40S ribosomal protein S16 OS=Rattus norvegicus GN=Rps16 PE=1 SV=2) HSP 1 Score: 176.022 bits (445), Expect = 7.890e-44 Identity = 83/117 (70.94%), Postives = 101/117 (86.32%), Query Frame = -2 Query: 130 GLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 480 GLIK+NG P+E++EP L++K EP+LL G+ F GVD+R+RVKGGGH +Q+YAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTL+VAD RRCE KKF G GARAR+QKS R Sbjct: 30 GLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146 The following BLAST results are available for this feature:
BLAST of CN188702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 59
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188702 ID=CN188702; Name=CN188702; organism=Citrus sinensis; type=EST; length=490bpback to top |