CN188702

Overview
NameCN188702
Unique NameCN188702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1351 contig Csv1_Contig1351:137..625. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS16_GOSHI (40S ribosomal protein S16 OS=Gossypium hirsutum GN=RPS16 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.098e-53
Identity = 106/118 (89.83%), Postives = 108/118 (91.53%), Query Frame = -2
Query:  130 RGLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 483
            RGLIKINGCPIELVEPEILRFKA EPILL GR  F GVDMRIRVKGGGHTSQ+YAIRQSIAKALVAFYQKYVDE SKKEIKDILV YDRTL+VAD RRCEPKKF GRGARARFQKS R
Sbjct:   28 RGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 145          
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS16_LUPPO (40S ribosomal protein S16 OS=Lupinus polyphyllus GN=RPS16 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 3.196e-53
Identity = 106/119 (89.08%), Postives = 109/119 (91.60%), Query Frame = -2
Query:  130 ARGLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 486
            A GLIKING PIELVEPEILRFKAFEPILL G+  F GVDMRIRVKGGGHTSQ+YAIRQSIAKALVAFYQKYVDE SKKEIKDILVRYDRTL+VAD RRCEPKKF GRGARARFQKS R
Sbjct:   27 AAGLIKINGSPIELVEPEILRFKAFEPILLLGKSRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 145          
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS161_ARATH (40S ribosomal protein S16-1 OS=Arabidopsis thaliana GN=RPS16A PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 3.907e-51
Identity = 98/117 (83.76%), Postives = 107/117 (91.45%), Query Frame = -2
Query:  130 GLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 480
            GLIK+NGCPIEL +PEILRFK FEPILL G+H F GV+MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDE SKKEIKDILVRYDRTL+VAD RRCEPKKF GRGAR+R+QKS R
Sbjct:   30 GLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146          
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS163_ARATH (40S ribosomal protein S16-3 OS=Arabidopsis thaliana GN=RPS16C PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 5.102e-51
Identity = 97/117 (82.91%), Postives = 107/117 (91.45%), Query Frame = -2
Query:  130 GLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 480
            GLIK+NGCPIEL +PEILRFK FEP+LL G+H F GV+MRIRV GGGHTSQ+YAIRQSIAKALVA+YQKYVDE SKKEIKDILVRYDRTL+VAD RRCEPKKF GRGAR+R+QKS R
Sbjct:   30 GLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146          
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS16_FRIAG (40S ribosomal protein S16 OS=Fritillaria agrestis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 6.664e-51
Identity = 98/118 (83.05%), Postives = 109/118 (92.37%), Query Frame = -2
Query:  130 RGLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 483
            RGLIK+NG PIELV+PEILR+KAFEPILL GRH F GVDMRIRV+GGG TSQ+YAIRQSIAKALVA+YQKYVDE +KKE+KDIL+RYDRTL+VAD RRCEPKKF GRGAR+RFQKS R
Sbjct:   28 RGLIKVNGSPIELVKPEILRYKAFEPILLLGRHRFVGVDMRIRVRGGGKTSQIYAIRQSIAKALVAYYQKYVDEQAKKEVKDILMRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 145          
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS16_ORYSJ (40S ribosomal protein S16 OS=Oryza sativa subsp. japonica GN=RPS16A PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 6.896e-48
Identity = 93/118 (78.81%), Postives = 103/118 (87.29%), Query Frame = -2
Query:  130 RGLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 483
            RGLIK+NG PIEL+ PE+LR KAFEPILL GR  F  +DMRIRV+GGG TSQ+YAIRQ+IAKALVA+YQKYVDE SKKE+KDI  RYDRTL+VAD RRCEPKKF GRGARARFQKS R
Sbjct:   32 RGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149          
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS16_ORYSI (40S ribosomal protein S16 OS=Oryza sativa subsp. indica GN=RPS16A PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 6.896e-48
Identity = 93/118 (78.81%), Postives = 103/118 (87.29%), Query Frame = -2
Query:  130 RGLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 483
            RGLIK+NG PIEL+ PE+LR KAFEPILL GR  F  +DMRIRV+GGG TSQ+YAIRQ+IAKALVA+YQKYVDE SKKE+KDI  RYDRTL+VAD RRCEPKKF GRGARARFQKS R
Sbjct:   32 RGLIKVNGVPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGKTSQIYAIRQAIAKALVAYYQKYVDEASKKEVKDIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 149          
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS16_TORRU (40S ribosomal protein S16 OS=Tortula ruralis GN=RPS16 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.536e-47
Identity = 95/118 (80.51%), Postives = 107/118 (90.68%), Query Frame = -2
Query:  130 RGLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 483
            RGLI++   PIELVEPEILR+KAFEP+LL GR  F GVDMRIRVKGGG+TSQ+YAIRQSIAKALVA++QKYVDE SKKEIKD+L+RYDRTL+VAD RRCEPKKF GRGAR+RFQKS R
Sbjct:   26 RGLIRLT-VPIELVEPEILRYKAFEPVLLLGRSKFAGVDMRIRVKGGGNTSQIYAIRQSIAKALVAYFQKYVDEQSKKEIKDVLLRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 142          
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS162_ARATH (40S ribosomal protein S16-2 OS=Arabidopsis thaliana GN=RPS16B PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 5.838e-47
Identity = 92/117 (78.63%), Postives = 103/117 (88.03%), Query Frame = -2
Query:  130 GLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 480
            G+IK+NG PIEL +PEILRFK FEP+LL G+H F GVDMRIR  GGG+TS++YAIRQSIAKALVA+YQKYVDE SKKEIKDIL+RYDRTL+VAD RRCE KKF G GARARFQKS R
Sbjct:   30 GMIKLNGSPIELYQPEILRFKIFEPVLLLGKHRFAGVDMRIRATGGGNTSRVYAIRQSIAKALVAYYQKYVDEQSKKEIKDILMRYDRTLLVADPRRCESKKFGGPGARARFQKSYR 146          
BLAST of CN188702 vs. ExPASy Swiss-Prot
Match: RS16_RAT (40S ribosomal protein S16 OS=Rattus norvegicus GN=Rps16 PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 7.890e-44
Identity = 83/117 (70.94%), Postives = 101/117 (86.32%), Query Frame = -2
Query:  130 GLIKINGCPIELVEPEILRFKAFEPILLFGRHCFNGVDMRIRVKGGGHTSQMYAIRQSIAKALVAFYQKYVDEPSKKEIKDILVRYDRTLIVADHRRCEPKKFRGRGARARFQKSCR 480
            GLIK+NG P+E++EP  L++K  EP+LL G+  F GVD+R+RVKGGGH +Q+YAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTL+VAD RRCE KKF G GARAR+QKS R
Sbjct:   30 GLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146          
The following BLAST results are available for this feature:
BLAST of CN188702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
RS16_GOSHI1.098e-5389.8340S ribosomal protein S16 OS=Gossypium hirsutum GN... [more]
RS16_LUPPO3.196e-5389.0840S ribosomal protein S16 OS=Lupinus polyphyllus G... [more]
RS161_ARATH3.907e-5183.7640S ribosomal protein S16-1 OS=Arabidopsis thalian... [more]
RS163_ARATH5.102e-5182.9140S ribosomal protein S16-3 OS=Arabidopsis thalian... [more]
RS16_FRIAG6.664e-5183.0540S ribosomal protein S16 OS=Fritillaria agrestis ... [more]
RS16_ORYSJ6.896e-4878.8140S ribosomal protein S16 OS=Oryza sativa subsp. j... [more]
RS16_ORYSI6.896e-4878.8140S ribosomal protein S16 OS=Oryza sativa subsp. i... [more]
RS16_TORRU1.536e-4780.5140S ribosomal protein S16 OS=Tortula ruralis GN=RP... [more]
RS162_ARATH5.838e-4778.6340S ribosomal protein S16-2 OS=Arabidopsis thalian... [more]
RS16_RAT7.890e-4470.9440S ribosomal protein S16 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006J18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188702 ID=CN188702; Name=CN188702; organism=Citrus sinensis; type=EST; length=490bp
ACAATACCGTTAAGAATAACAATAACCCCCCTAAATGTATGTGGCCTCAA
AAACATATTAATTAATCCTTCAATAAAACCCAAAATTAATAACAATAATA
AAAACGCAACATATACCTCTGTTTCTTCAACGGCAAGATTTCTGGAACCT
AGCCCTGGCCCCTCGTCCTCTGAACTTCTTAGGCTCACAGCGTCTATGAT
CAGCCACAATTAAAGTCCTATCGTACCTAACCAGAATGTCTTTTATCTCC
TTCTTGCTCGGTTCGTCCACGTACTTCTGATAAAACGCGACCAAGGCCTT
GGCGATGCTCTGGCGTATAGCGTACATCTGAGATGTGTGGCCTCCGCCCT
TGACGCGGATCCTCATGTCTACTCCGTTGAAACAGTGTCGTCCGAACAAT
AGGATCGGCTCGAAGGCCTTGAAACGCAGGATCTCTGGCTCCACAAGCTC
GATTGGGCAGCCGTTGATCTTGATCAAGCCGCGGGCGCAC
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