CN181734

Overview
NameCN181734
Unique NameCN181734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length539
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181734_ssr14 microsatellite CN181734_ssr14:14..25. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12521 contig Csv1_Contig12521:365..903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181734 vs. ExPASy Swiss-Prot
Match: ATS1_SCHPO (N-acetyltransferase ats1 OS=Schizosaccharomyces pombe GN=ats1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.202e-19
Identity = 40/93 (43.01%), Postives = 68/93 (73.12%), Query Frame = 1
Query:  133 AGFVLFFPNYSTFLAKPGFYIEDIFVRECYRRKGFGRILLSAVAKQAVKMGYGRVEWIVLDWNVNAIKFYEEMGAKVLSEWRICRLTGDALDA 411
            AG  ++F N+ST+ ++ G Y+ED++VR  +R KG+G  LLS +A++++++G  R++W+VLDWN  AI+ YE+ GA+ +  W + R+TG+ L A
Sbjct:   67 AGMAIYFLNFSTWTSRVGIYLEDLYVRPQFRGKGYGSYLLSYLARESLRIGGRRLDWVVLDWNQRAIEVYEKAGAQKVGGWSMMRVTGENLKA 159          
BLAST of CN181734 vs. ExPASy Swiss-Prot
Match: THT11_TOBAC (Tyramine N-feruloyltransferase 4/11 OS=Nicotiana tabacum GN=THT4 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.408e-19
Identity = 44/104 (42.31%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  109 DETHDVTVAGFVLFFPNYSTFLAKPGFYIEDIFVRECYRRKGFGRILLSAVAKQAVKMGYGRVEWIVLDWNVNAIKFYEEMGAKVLSEWRICRLTGDALDAYGN 420
            DE  DV +AG+  F+ NYS F  K G Y E ++ RE YR+ G G +L   VA  A   G+  VE IV  WN  +  FY  MG ++  E+R  +L GDAL  Y +
Sbjct:  119 DEKEDVFIAGYAFFYANYSCFYDKAGIYFESLYFRESYRKLGMGSLLFGTVASIAANNGFASVEGIVAVWNKKSYDFYVNMGVEIFDEFRYGKLVGDALQKYAD 222          
BLAST of CN181734 vs. ExPASy Swiss-Prot
Match: THT10_TOBAC (Tyramine N-feruloyltransferase 10/30 OS=Nicotiana tabacum GN=THT10 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 8.369e-19
Identity = 44/104 (42.31%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  109 DETHDVTVAGFVLFFPNYSTFLAKPGFYIEDIFVRECYRRKGFGRILLSAVAKQAVKMGYGRVEWIVLDWNVNAIKFYEEMGAKVLSEWRICRLTGDALDAYGN 420
            DE  DV +AG+  F+ NYS F  K G Y E ++ RE YR+ G G +L   VA  A   G+  VE IV  WN  +  FY  MG ++  E+R  +L GDAL  Y +
Sbjct:  119 DEKEDVFIAGYAFFYANYSCFYDKAGIYFESLYFRESYRKLGMGGLLFGTVASIAANNGFASVEGIVAVWNKKSYDFYVNMGVEIFDEFRYGKLVGDALQKYAD 222          
The following BLAST results are available for this feature:
BLAST of CN181734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ATS1_SCHPO2.202e-1943.01N-acetyltransferase ats1 OS=Schizosaccharomyces po... [more]
THT11_TOBAC6.408e-1942.31Tyramine N-feruloyltransferase 4/11 OS=Nicotiana t... [more]
THT10_TOBAC8.369e-1942.31Tyramine N-feruloyltransferase 10/30 OS=Nicotiana ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G10_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181734 ID=CN181734; Name=CN181734; organism=Citrus sinensis; type=EST; length=539bp
TCATTTCACTCCCCTTCTTCTTCTTCTCCTTCTCCTTACTCGCCTGTCGA
CCGCGTCGTGTACCTCGACCTCCCCCTCGACGACCCGGACCGCGAAACCT
TCGCCTCCGACGAAACCCACGACGTTACCGTTGCTGGGTTTGTTTTGTTT
TTCCCAAACTACTCCACGTTCCTGGCCAAGCCCGGGTTTTACATTGAGGA
TATTTTTGTGAGGGAGTGTTATCGGAGGAAGGGTTTTGGGCGAATTCTGC
TGTCCGCCGTGGCGAAGCAGGCGGTGAAGATGGGGTACGGGAGAGTTGAA
TGGATTGTGCTTGATTGGAATGTGAATGCCATCAAGTTTTATGAGGAAAT
GGGTGCAAAAGTTTTGAGTGAGTGGAGGATTTGTAGGCTCACGGGTGACG
CTCTGGATGCTTATGGTAATGCTAATATTTAAAAGATGGCTTAGGGAATT
TGTTGACGCTTGTTGTTTGATGGTGGTTCGCTAATTGTGCCCTTTTGTTT
TCTCTAACTGGGGACAGTGAATTTCAAGGCTTTACTTTT
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