CN181732

Overview
NameCN181732
Unique NameCN181732
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10664 contig Csv1_Contig10664:565..1160. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_SOYBN (Superoxide dismutase [Fe], chloroplastic OS=Glycine max GN=SODB PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 8.855e-34
Identity = 71/102 (69.61%), Postives = 77/102 (75.49%), Query Frame = -2
Query:  189 TQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWD-YSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKAPAT 491
            TQFGSGWAWL Y+            P P E D  L+V+K+PNAVNPLVW  Y PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSW++VS RLE AKA  T
Sbjct:  146 TQFGSGWAWLAYRARKFDGENVANPPSPDE-DNKLVVLKSPNAVNPLVWGGYYPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWDAVSSRLEQAKALIT 246          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_NICPL (Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.666e-30
Identity = 64/98 (65.31%), Postives = 73/98 (74.49%), Query Frame = -2
Query:  198 TQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 491
            TQFGSGWAWL YK                 ++K L +VKTPNA NPLV  Y+PLLTIDVWEHAYYLDFQNRRPDYIS+FM+KLVSWE+VS RL++A A
Sbjct:  121 TQFGSGWAWLAYKP----------------EEKKLALVKTPNAENPLVLGYTPLLTIDVWEHAYYLDFQNRRPDYISIFMEKLVSWEAVSSRLKAATA 202          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_ARATH (Superoxide dismutase [Fe], chloroplastic OS=Arabidopsis thaliana GN=SODB PE=1 SV=4)

HSP 1 Score: 122.094 bits (305), Expect = 2.112e-27
Identity = 62/98 (63.27%), Postives = 67/98 (68.37%), Query Frame = -2
Query:  198 TQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 491
            TQFG+GWAWL Y                   ++ L VVKTPNAVNPLV    PLLTIDVWEHAYYLDFQNRRPDYI  FM  LVSWE+VS RLE+AKA
Sbjct:  130 TQFGAGWAWLAYS------------------NEKLKVVKTPNAVNPLVLGSFPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAKA 209          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_PLEBO (Superoxide dismutase [Fe] OS=Plectonema boryanum GN=sodB PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.266e-20
Identity = 49/93 (52.69%), Postives = 58/93 (62.37%), Query Frame = -2
Query:  213 TQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 491
            TQFGSGWAWLV                  +   +L V KTPNA NPLV    PLLT+DVWEHAYYLDFQN RP +I  F+D LV+W+ V++ L
Sbjct:  123 TQFGSGWAWLV------------------DDGGTLKVTKTPNAENPLVHGQKPLLTLDVWEHAYYLDFQNARPAFIKNFLDNLVNWDFVAQNL 197          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_SYNY3 (Superoxide dismutase [Fe] OS=Synechocystis sp. (strain PCC 6803) GN=sodB PE=1 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 5.572e-20
Identity = 49/96 (51.04%), Postives = 61/96 (63.54%), Query Frame = -2
Query:  204 TQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 491
            TQFGSGWAWLV                    + +L V KT NA NP+    +PLLT+DVWEHAYYLD+QNRRPDYI+ F+ KLV+W+ V+  L +A
Sbjct:  122 TQFGSGWAWLVLD------------------NGTLKVTKTGNAENPMTAGQTPLLTMDVWEHAYYLDYQNRRPDYIADFLGKLVNWDFVAANLAAA 199          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_SYNE7 (Superoxide dismutase [Fe] OS=Synechococcus elongatus (strain PCC 7942) GN=sodB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.117e-19
Identity = 48/98 (48.98%), Postives = 59/98 (60.20%), Query Frame = -2
Query:  198 TQFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 491
            TQFGSGWAWLV                    + +L + KT NA  P+    +PLLTIDVWEHAYYLD+QNRRPDYIS F++KL +W+  S    +A A
Sbjct:  122 TQFGSGWAWLVLD------------------NGTLKITKTGNADTPIAHGQTPLLTIDVWEHAYYLDYQNRRPDYISTFVEKLANWDFASANYAAAIA 201          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_RHOCA (Superoxide dismutase [Fe] OS=Rhodobacter capsulatus GN=sodB PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.051e-18
Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = -2
Query:  213 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 488
            QFGSGWAWLV                  + D +L + KT N VNPL +  + LL  DVWEH+YY+DF+N+RP Y++ F+DKLV+WE+V+ R+
Sbjct:  126 QFGSGWAWLV-----------------KDSDGALKITKTENGVNPLCFGQTALLGCDVWEHSYYIDFRNKRPAYLTNFLDKLVNWENVASRM 200          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_RICCN (Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii GN=sodB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.415e-17
Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = -2
Query:  213 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 488
            QFGSGWAWL+Y                   D  L ++KT NA  P+     PLL  DVWEHAYY+D++N+RPDY+ +F+  +++W+ V   L
Sbjct:  134 QFGSGWAWLIYH------------------DNRLQIIKTANAGTPIAHGMKPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWKFVEDNL 207          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_RICBR (Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii (strain RML369-C) GN=sodB PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.415e-17
Identity = 40/92 (43.48%), Postives = 53/92 (57.61%), Query Frame = -2
Query:  213 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 488
            QFGSGWAWLVY                   +  L +VKT NA  P+     PLL  DVWEHAYY+D++N+RPDY+ +F+  +++WE V   L
Sbjct:  134 QFGSGWAWLVYH------------------NNRLQIVKTANAGTPIANGMQPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWEFVENNL 207          
BLAST of CN181732 vs. ExPASy Swiss-Prot
Match: SODF_RHIME (Superoxide dismutase [Mn] OS=Rhizobium meliloti GN=sodB PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 4.415e-17
Identity = 41/95 (43.16%), Postives = 57/95 (60.00%), Query Frame = -2
Query:  204 QFGSGWAWLVYKXXXXXXXXXXXNPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 488
            QFGSGWAWL                  S K+  L + KTPN  NPLV   +P+L +DVWEH+YY+D++N RP Y+  F+D L++W+ V +  E+A
Sbjct:  122 QFGSGWAWL------------------SVKNGKLEISKTPNGENPLVHGATPILGVDVWEHSYYIDYRNARPKYLEAFVDNLINWDYVLELYEAA 198          
The following BLAST results are available for this feature:
BLAST of CN181732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
SODF_SOYBN8.855e-3469.61Superoxide dismutase [Fe], chloroplastic OS=Glycin... [more]
SODF_NICPL2.666e-3065.31Superoxide dismutase [Fe], chloroplastic (Fragment... [more]
SODF_ARATH2.112e-2763.27Superoxide dismutase [Fe], chloroplastic OS=Arabid... [more]
SODF_PLEBO4.266e-2052.69Superoxide dismutase [Fe] OS=Plectonema boryanum G... [more]
SODF_SYNY35.572e-2051.04Superoxide dismutase [Fe] OS=Synechocystis sp. (st... [more]
SODF_SYNE72.117e-1948.98Superoxide dismutase [Fe] OS=Synechococcus elongat... [more]
SODF_RHOCA1.051e-1846.74Superoxide dismutase [Fe] OS=Rhodobacter capsulatu... [more]
SODF_RICCN4.415e-1741.30Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii... [more]
SODF_RICBR4.415e-1743.48Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii ... [more]
SODF_RHIME4.415e-1743.16Superoxide dismutase [Mn] OS=Rhizobium meliloti GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181732 ID=CN181732; Name=CN181732; organism=Citrus sinensis; type=EST; length=597bp
CCCTGATTGTTATAAGAAGAAACAACACTTTGACAATAGAGATTACTAAT
CACAAAGTAGTGTGTACCAAAGACCTAACTATTTTTATTGTTCAGCAAAG
TATCATCAGCACAACATAGTGTTGCTACCAAGCAGCTTATTATTTATTTT
CTCTTCATCTTCCTTCATCATTCTTCCATTTCAATCTAGGTAGCTGGAGC
TTTGGCTGATTCCAGTCTTTTACTTACTGATTCCCATGATACAAGCTTAT
CCATGAAAACTGATATGTAATCAGGTCGTCGATTCTGAAAGTCGAGGTAA
TAAGCATGCTCCCATACATCAATAGTAAGGAGCGGCGAGTAATCCCAGAC
AAGAGGATTGACAGCATTGGGAGTCTTCACCACTAAAAGGCTCTTGTCCT
TCTCCGATGGAAGAGGATTCACCGCATTAGCCACATCAGCTCTATTATTG
GCTTTGTATACAAGCCAGGCCCAACCAGAACCAAACTGAGTGGCTGCAGC
CGCCTTGAATTCCTCAAGAAATTTTTCAAAAGAACCCAAAATCCCTTTCA
ATCAGTCCTAGAAGTTCACCAGACGGCTTTCCGCCACCCCCCGGTTT
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