CN181724

Overview
NameCN181724
Unique NameCN181724
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3495 contig Csv1_Contig3495:873..1478. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: SYM_ORYSJ (Probable methionyl-tRNA synthetase OS=Oryza sativa subsp. japonica GN=Os06g0508700 PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 9.503e-46
Identity = 77/106 (72.64%), Postives = 86/106 (81.13%), Query Frame = -1
Query:  224 CVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSIR 541
            CVLCNLKPVAMRGIKSHAMVL AS  D+TKVELVEPP+SA +GERV F G+ GEP+  LN K K WE +  DLH+N ELVACYKD+PFTTSAG+C V SI SG IR
Sbjct:  696 CVLCNLKPVAMRGIKSHAMVLAASNEDHTKVELVEPPESAAVGERVTFAGYSGEPEASLNAKSKTWEKLSADLHSNGELVACYKDVPFTTSAGVCKVKSIASGEIR 801          

HSP 2 Score: 38.891 bits (89), Expect = 9.503e-46
Identity = 21/28 (75.00%), Postives = 23/28 (82.14%), Query Frame = -3
Query:  528 RTVVSGLVKHIPLEEMQER--MVLCSLQ 605
            RTVVSGLVK IPLEEMQ R   VLC+L+
Sbjct:  675 RTVVSGLVKFIPLEEMQNRKVCVLCNLK 702          
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: SYM_ARATH (Probable methionyl-tRNA synthetase OS=Arabidopsis thaliana GN=At4g13780 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 8.358e-43
Identity = 83/115 (72.17%), Postives = 94/115 (81.74%), Query Frame = -1
Query:  224 LKRCRREWSCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSIR 568
            L+  +    CVLCNLKP  MR I S AMVL AS+SD +KVELVEPPK+A IGERV FPGFEGEPDDVLNPKKKVWET+ VDL+T   LVACYKD+PFTTSAG+C VSSI +G+IR
Sbjct:  683 LEEMQNRMVCVLCNLKPAKMRDIVSQAMVLAASSSDGSKVELVEPPKTANIGERVTFPGFEGEPDDVLNPKKKVWETLLVDLNTKENLVACYKDVPFTTSAGVCKVSSISNGTIR 797          
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: AIMP1_CRIGR (Aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 OS=Cricetulus griseus GN=AIMP1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.389e-30
Identity = 54/106 (50.94%), Postives = 70/106 (66.04%), Query Frame = -1
Query:  224 VLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSA-GICTVSSIQSGSIR 538
            +LCNLKP  MRGI S AMV+CAS+ +  KVE++ PP  +  G+R+ F  F GEPD  LNPKKK+WE +Q DLHTN E VA YK  PF     G+C   ++ +  I+
Sbjct:  256 LLCNLKPAKMRGILSQAMVMCASSPE--KVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNAECVATYKGSPFEVKGKGVCRAQTMANSGIK 359          

HSP 2 Score: 39.6614 bits (91), Expect = 1.389e-30
Identity = 18/28 (64.29%), Postives = 24/28 (85.71%), Query Frame = -3
Query:  528 RTVVSGLVKHIPLEEMQERMV--LCSLQ 605
            RTV+SGLV H+PL++MQ RMV  LC+L+
Sbjct:  234 RTVISGLVNHVPLDQMQNRMVVLLCNLK 261          
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: AIMP1_HUMAN (Aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 OS=Homo sapiens GN=AIMP1 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 3.528e-25
Identity = 53/116 (45.69%), Postives = 75/116 (64.66%), Query Frame = -1
Query:  224 LKRCRREWSCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSA-GICTVSSIQSGSIR 568
            L++ +     +LCNLKP  MRG+ S AMV+CAS+ +  K+E++ PP  +  G+R+ F  F GEPD  LNPKKK+WE +Q DLHTN E VA YK +PF     G+C   ++ +  I+
Sbjct:  199 LEQMQNRMVILLCNLKPAKMRGVLSQAMVMCASSPE--KIEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKGVPFEVKGKGVCRAQTMSNSGIK 312          
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: AIMP1_MOUSE (Aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 OS=Mus musculus GN=Aimp1 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 7.859e-25
Identity = 54/116 (46.55%), Postives = 74/116 (63.79%), Query Frame = -1
Query:  224 LKRCRREWSCVLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSA-GICTVSSIQSGSIR 568
            L++ +     +LCNLKP  MRG+ S AMV+CAS+ +  KVE++ PP  +  G+R+ F  F GEPD  LNPKKK+WE +Q DLHTN E VA YK  PF     G+C   ++ +  I+
Sbjct:  197 LEQMQNRMVVLLCNLKPAKMRGVLSQAMVMCASSPE--KVEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNAECVATYKGAPFEVKGKGVCRAQTMANSGIK 310          
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: SYYC_BOVIN (Tyrosyl-tRNA synthetase, cytoplasmic OS=Bos taurus GN=YARS PE=2 SV=4)

HSP 1 Score: 94.3597 bits (233), Expect = 6.063e-24
Identity = 50/106 (47.17%), Postives = 67/106 (63.21%), Query Frame = -1
Query:  227 VLCNLKPVAMRGIKSHAMVLCASTSD-NTKVELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 538
            VLCNLKP  MRG+KS  M+LCAS    N KVE ++PP  +  GERV   G+E G+PD+ L PKKKV+E +Q D   + E +A +K   F T  G  +  S++ G+I
Sbjct:  422 VLCNLKPQKMRGVKSQGMLLCASVEGVNRKVEPLDPPAGSAPGERVFVKGYEKGQPDEELKPKKKVFEKLQADFKISDEYIAQWKQTNFMTKMGSVSCKSLKGGNI 527          

HSP 2 Score: 35.8094 bits (81), Expect = 6.063e-24
Identity = 17/30 (56.67%), Postives = 25/30 (83.33%), Query Frame = -3
Query:  522 RTVVSGLVKHIPLEEMQERM--VLCSLQSE 605
            RTVVSGLV+ +P EE+Q+R+  VLC+L+ +
Sbjct:  400 RTVVSGLVQFVPKEELQDRLVVVLCNLKPQ 429          
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: SYMC_CAEEL (Methionyl-tRNA synthetase, cytoplasmic OS=Caenorhabditis elegans GN=mrs-1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.796e-23
Identity = 45/86 (52.33%), Postives = 57/86 (66.28%), Query Frame = -1
Query:  281 VLCNLKPVAMRGIKSHAMVLCASTSDNTKVELVEPPKSAKIGERVAFPGFEGEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIP 538
            VLCNLKP  MRG++S AMV+CAS+ D  KVE++E P  +K G  V  P +   PD+ LNPKKK+WETV  DL  + E  A +K  P
Sbjct:  814 VLCNLKPAKMRGVESRAMVMCASSPD--KVEIMEVPADSKPGTPVVCPPYTHRPDEQLNPKKKIWETVAEDLKVSAEGFAEWKGQP 897          

HSP 2 Score: 39.6614 bits (91), Expect = 3.796e-23
Identity = 18/28 (64.29%), Postives = 25/28 (89.29%), Query Frame = -3
Query:  528 RTVVSGLVKHIPLEEMQERM--VLCSLQ 605
            RTVVSGLV+H+PL++MQ R+  VLC+L+
Sbjct:  792 RTVVSGLVRHVPLDQMQNRLVVVLCNLK 819          
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: SYYC_DANRE (Tyrosyl-tRNA synthetase, cytoplasmic OS=Danio rerio GN=yars PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.983e-23
Identity = 52/106 (49.06%), Postives = 71/106 (66.98%), Query Frame = -1
Query:  227 VLCNLKPVAMRGIKSHAMVLCASTS-DNTKVELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 538
            +LCNLKP  MRGI+S AMVLCAS   +  KVE ++PP+ +  G+RV   G+E G+PDD L PKKKV+E +QVDL  + E VA +K+    T  G  T  +++ G+I
Sbjct:  423 LLCNLKPQKMRGIESQAMVLCASIEGEPRKVEPLDPPEGSAAGDRVYVEGYESGKPDDELKPKKKVFEKLQVDLKISGEFVAQWKEQNLMTKLGRITCKTLKGGNI 528          

HSP 2 Score: 31.9574 bits (71), Expect = 4.983e-23
Identity = 16/30 (53.33%), Postives = 24/30 (80.00%), Query Frame = -3
Query:  522 RTVVSGLVKHIPLEEMQERMV--LCSLQSE 605
            RTVVSGLV +I  E++Q+R+V  LC+L+ +
Sbjct:  401 RTVVSGLVAYITEEQLQDRLVVLLCNLKPQ 430          
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: SYYC_CHICK (Tyrosyl-tRNA synthetase, cytoplasmic OS=Gallus gallus GN=YARS PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.983e-23
Identity = 49/106 (46.23%), Postives = 68/106 (64.15%), Query Frame = -1
Query:  227 VLCNLKPVAMRGIKSHAMVLCAST-SDNTKVELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 538
            +LCNLKP  MRG++S  MVLCAS+  +  +VE ++PP     GERV   G+E GEPDD L PKKKV+E +Q D   + + +A +K+  F T  G  +  S++ GSI
Sbjct:  421 LLCNLKPQKMRGVESQGMVLCASSVGEPRQVEPLDPPAECCAGERVYVEGYEDGEPDDELKPKKKVFEKLQADFRISEDCIAQWKERNFLTKLGSISCKSLKGGSI 526          

HSP 2 Score: 34.6538 bits (78), Expect = 4.983e-23
Identity = 16/30 (53.33%), Postives = 25/30 (83.33%), Query Frame = -3
Query:  522 RTVVSGLVKHIPLEEMQERMV--LCSLQSE 605
            RTVVSGLV+ +P E++Q+R+V  LC+L+ +
Sbjct:  399 RTVVSGLVQFVPKEQLQDRLVVLLCNLKPQ 428          
BLAST of CN181724 vs. ExPASy Swiss-Prot
Match: SYYC_PONAB (Tyrosyl-tRNA synthetase, cytoplasmic OS=Pongo abelii GN=YARS PE=2 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 6.483e-23
Identity = 48/106 (45.28%), Postives = 67/106 (63.21%), Query Frame = -1
Query:  227 VLCNLKPVAMRGIKSHAMVLCASTSD-NTKVELVEPPKSAKIGERVAFPGFE-GEPDDVLNPKKKVWETVQVDLHTNTELVACYKDIPFTTSAGICTVSSIQSGSI 538
            VLCNLKP  MRG++S  M+LCAS    N +VE ++PP  +  GERV   G+E G+PD+ L PKKKV+E +Q D   + E +A +K   F T  G  +  S++ G+I
Sbjct:  422 VLCNLKPQKMRGVESQGMLLCASIEGINRQVEPLDPPAGSAPGERVFVKGYEKGQPDEELKPKKKVFEKLQADFKISEECIAQWKQTNFMTKLGSISCKSLKGGNI 527          

HSP 2 Score: 35.8094 bits (81), Expect = 6.483e-23
Identity = 17/30 (56.67%), Postives = 25/30 (83.33%), Query Frame = -3
Query:  522 RTVVSGLVKHIPLEEMQERM--VLCSLQSE 605
            RTVVSGLV+ +P EE+Q+R+  VLC+L+ +
Sbjct:  400 RTVVSGLVQFVPKEELQDRLVVVLCNLKPQ 429          
The following BLAST results are available for this feature:
BLAST of CN181724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
SYM_ORYSJ9.503e-4672.64Probable methionyl-tRNA synthetase OS=Oryza sativa... [more]
SYM_ARATH8.358e-4372.17Probable methionyl-tRNA synthetase OS=Arabidopsis ... [more]
AIMP1_CRIGR1.389e-3050.94Aminoacyl tRNA synthetase complex-interacting mult... [more]
AIMP1_HUMAN3.528e-2545.69Aminoacyl tRNA synthetase complex-interacting mult... [more]
AIMP1_MOUSE7.859e-2546.55Aminoacyl tRNA synthetase complex-interacting mult... [more]
SYYC_BOVIN6.063e-2447.17Tyrosyl-tRNA synthetase, cytoplasmic OS=Bos taurus... [more]
SYMC_CAEEL3.796e-2352.33Methionyl-tRNA synthetase, cytoplasmic OS=Caenorha... [more]
SYYC_DANRE4.983e-2349.06Tyrosyl-tRNA synthetase, cytoplasmic OS=Danio reri... [more]
SYYC_CHICK4.983e-2346.23Tyrosyl-tRNA synthetase, cytoplasmic OS=Gallus gal... [more]
SYYC_PONAB6.483e-2345.28Tyrosyl-tRNA synthetase, cytoplasmic OS=Pongo abel... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G05_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181724 ID=CN181724; Name=CN181724; organism=Citrus sinensis; type=EST; length=607bp
AATTCAACTGCTCATTGCTCAAGGCAATTGGGTTTTCTTCTAATGAGGGG
AAAAGGTAACACTAATGAAGCCACGACATAATCTAGTCTACTACTGACAC
AAAATTCTTGTCCACATACAACATTTCACACAACGAGAAAAAGTCACTAG
GATAAAAAAGCAAAGTTAACACAATCAGAAGATTAGGAATTCTCGCTTTC
CAATGATTGAAGAAGTCGAGCTACCGTATAGACCCACTTTGAATGGAGGA
AACAGTGCAAATACCAGCTGATGTCGTGAAAGGAATATCTTTATAGCAGG
CCACCAGCTCGGTGTTAGTGTGTAAATCCACTTGCACTGTCTCCCAAACC
TTCTTCTTAGGGTTTAACACATCATCAGGCTCGCCTTCAAACCCAGGAAA
TGCAACTCTTTCTCCAATTTTTGCAGATTTTGGTGGCTCAACCAATTCAA
CCTTGGTGTTATCACTGGTTGAAGCACAAAGAACCATTGCATGTGATTTG
ATTCCCCTCATTGCTACTGGTTTCAGATTGCAAAGAACACAGGACCATTC
TCTCCTGCATCTCTTCAAGAGGTATATGCTTGACAAGGCCACTAACTACT
GTTCGAG
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