CN181720

Overview
NameCN181720
Unique NameCN181720
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length509
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig132 contig Csv1_Contig132:703..1204. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN181720 vs. ExPASy Swiss-Prot
Match: UBC32_ARATH (Ubiquitin carrier protein E2 32 OS=Arabidopsis thaliana GN=UBC32 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.874e-15
Identity = 48/88 (54.55%), Postives = 55/88 (62.50%), Query Frame = 3 
Query:   15 VGDRIIEEVQEDLPASMNPNPVVAGTSR-EVPANASGVQLQPKPETRVQKPADDRLFTWAAVGLTIAILVLLLKKFMKSNGHGTVFMD 275
            V D+IIEE  E +  + +  P  A     EV   AS    Q       QKP DDRLFTWAAVGLTIAI+VLLLKKF+KSNG+ T FMD
Sbjct:  219 VDDQIIEETAEAVNTAASVVPAAAPLPAVEVVVKASVSGEQRMARRAAQKPVDDRLFTWAAVGLTIAIMVLLLKKFIKSNGYSTGFMD 306
The following BLAST results are available for this feature:
BLAST of CN181720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UBC32_ARATH2.874e-1554.55Ubiquitin carrier protein E2 32 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181720 ID=CN181720; Name=CN181720; organism=Citrus sinensis; type=EST; length=509bp
GAGGCCCAGCCCCAGTAGGTGATAGGATTATTGAAGAAGTTCAGGAGGAT
CTTCCTGCCAGCATGAATCCCAACCCCGTAGTGGCTGGAACATCAAGAGA
GGTTCCTGCCAACGCCTCTGGAGTCCAGCTTCAGCCAAAACCGGAGACCA
GGGTTCAAAAACCTGCTGATGATCGACTGTTCACATGGGCTGCTGTTGGA
CTTACTATTGCAATTTTGGTTCTTTTACTGAAGAAATTCATGAAATCTAA
TGGTCATGGTACTGTTTTCATGGATGGTTCGTAGATATGCTATCGGTTTC
GTCAAATCTGGGAGTTCAAAATTTCCAAGTCATAGTAGTTAAGGGAGAAA
TTATTATCAAGGGCATTAATCTTTATTGAAACAGTTTGTCGTATATATGA
TCTTTTATACCCCATGACTGTAATTTCATACGCAATTGTAAGCCAGATTG
TCCTGTCATTTTGTACACAATTTGGATATCTATATTTCATGCTAAAAAAA
AAAAAAAAA
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