CN188696

Overview
NameCN188696
Unique NameCN188696
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188696_ssr772 microsatellite CN188696_ssr772:772..783. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2681 contig Csv1_Contig2681:1..859. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188696 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 3.059e-67
Identity = 141/228 (61.84%), Postives = 164/228 (71.93%), Query Frame = -2
Query:  109 LVSREARTSIARRNVAPCSVTLPATS---RKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQG-----TQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 768
            +VS  +RT+  +   AP SV  P +    RK A RL A   QA G+NKDTSVDVHV++ NQG     +  ERRPRR ALD+ PFGL+DP  P RTMRQM+DTMDRL EDTM FPG SR  G G++R PWDIK++ENEIKMRFDMPGL            VLVIKGEH+ EE+G D SW G ++SSYDTRL LPDN +KDKVKAELKNGVL ISIPKT VE+KV DV+I
Sbjct:   18 VVSATSRTNNKKTTTAPFSVCFPYSKCSVRKPASRLVA---QATGDNKDTSVDVHVSNNNQGGNNQGSAVERRPRRMALDVSPFGLLDPMSPMRTMRQMMDTMDRLFEDTMTFPG-SRNRGTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEHKKEESGKDDSW-GRNYSSYDTRLSLPDNVDKDKVKAELKNGVLLISIPKTKVEKKVTDVEI 240          
BLAST of CN188696 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.163e-66
Identity = 138/229 (60.26%), Postives = 163/229 (71.18%), Query Frame = -2
Query:  109 PLVSREARTSIARRN----VAPCSVTLPATSRKGAYRLQAVRAQAGGENKDTSVDVHVNSG----NQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 771
            PLVS  +    ++ N     APCSV +P+  R+   RL A   +A G+NKDTSVDVH +S     NQGT  ERRP R ALD+ PFG++DP  P RTMRQM+DTMDRL EDTM FPGR+RA G G++RTPWDI ++ENEIKMRFDMPGL            +LVIKGEH+ EE G D    G ++SSYDTRL LPDN  KDK+KAELKNGVL+ISIPKT VE+KVIDVQI
Sbjct:   10 PLVSNVSVGGTSKINNNKVSAPCSVFVPSM-RRPTTRLVA---RATGDNKDTSVDVHHSSAQGGNNQGTAVERRPTRMALDVSPFGVLDPMSPMRTMRQMIDTMDRLFEDTMTFPGRNRASGTGEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGRDKHSWGRNYSSYDTRLSLPDNVVKDKIKAELKNGVLFISIPKTEVEKKVIDVQI 234          
BLAST of CN188696 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 6.379e-65
Identity = 122/182 (67.03%), Postives = 148/182 (81.32%), Query Frame = -2
Query:  109 GGENKDTSVDV-HVNSGNQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAE-EAGGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 648
            GG+NKD SV+V HV+ G+QGT  E++PRRTA+DI PFG++DP  P R+MRQ+LDTMDR+ EDTM FPGR+   GGG++R PWDIK+EE+EI+MRFDMPGL            +LVIKG H++E E GGD SWS  ++SSYDTRL+LPDNCEKDKVKAELKNGVLYI+IPKT VERKVIDVQ+
Sbjct:    1 GGDNKDNSVEVQHVSKGDQGTAVEKKPRRTAMDISPFGILDPWSPMRSMRQILDTMDRVFEDTMTFPGRNI--GGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDSWSSRTYSSYDTRLKLPDNCEKDKVKAELKNGVLYITIPKTKVERKVIDVQV 180          
BLAST of CN188696 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 2.680e-63
Identity = 126/224 (56.25%), Postives = 164/224 (73.21%), Query Frame = -2
Query:  109 PLVSREARTSIARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGE--NKDTSVDVH-VNSGNQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 771
            P++S++  +S+  ++  PC  + P   +     L+ VRAQAGG+  NKD SV+VH VN  +QGT  ER+PRR+++DI PFGL+DP  P R+MRQMLDTMDR+ ED +  PGR+   GGG++R PW+IK+EE+EI+MRFDMPG+            VLVIK +HR EE GG+  WS  S+S YDTRL+LPDNCEK+KVKAELK+GVLYI+IPKT +ER VIDVQI
Sbjct:   13 PILSQKPGSSV--KSTPPCMASFPLRRQLPRLGLRNVRAQAGGDGDNKDNSVEVHRVNKDDQGTAVERKPRRSSIDISPFGLLDPWSPMRSMRQMLDTMDRIFEDAITIPGRNI--GGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHR-EENGGEDCWSRKSYSCYDTRLKLPDNCEKEKVKAELKDGVLYITIPKTKIERTVIDVQI 231          
BLAST of CN188696 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.988e-58
Identity = 125/214 (58.41%), Postives = 148/214 (69.16%), Query Frame = -2
Query:  109 SIARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQGTQAERRPR-RTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGG-GQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 744
            S++ ++  P SV+ P   RK   R   +RAQ   EN    V      GNQG+  E+RP+ R  +D+ PFGL+DP  P RTMRQMLDTMDR+ EDTM   GR+R G G  ++R PWDIKEEE+EIKMRFDMPGL            VLVIKGE + E++  D SWSG S SSY TRLQLPDNCEKDK+KAELKNGVL+I+IPKT VERKVIDVQI
Sbjct:   21 SVSSKSATPFSVSFP---RKIPSR---IRAQDQRENSIDVVQQGQQKGNQGSSVEKRPQQRLTMDVSPFGLLDPLSPMRTMRQMLDTMDRMFEDTMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDS--DDSWSGRSVSSYGTRLQLPDNCEKDKIKAELKNGVLFITIPKTKVERKVIDVQI 226          
BLAST of CN188696 vs. ExPASy Swiss-Prot
Match: HS21C_WHEAT (Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.243e-51
Identity = 115/230 (50.00%), Postives = 134/230 (58.26%), Query Frame = -2
Query:  109 LVSREARTSIARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGENKDTSVDVHV----NSGNQ-GTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEA-----GGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 768
            LVSR   +  AR  +       PA    G        A A  EN+D SVDV V    N+GNQ G   +RRPRR   DI PFGL+DP  P RTMRQMLDTMDRL +D + FP R       + R PWDI E+E E+KMRFDMPGL             LVI+GEH+ E       GGD  W   S SSYD RL LPD C+K +V+AELKNGVL +S+PK   ERKVIDVQ+
Sbjct:   10 LVSR--LSPAARLPIRAWRAARPAPLSTGGRTRPLSVASAAQENRDNSVDVQVSQAQNAGNQQGNAVQRRPRRAGFDISPFGLVDPMSPMRTMRQMLDTMDRLFDDAVGFPTRRSPAARARRRMPWDIMEDEKEVKMRFDMPGLSREEVRVMVEDDALVIRGEHKKEAGEGQGEGGDGWWKERSVSSYDMRLALPDECDKSQVRAELKNGVLLVSVPKRETERKVIDVQV 237          
BLAST of CN188696 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.757e-49
Identity = 122/234 (52.14%), Postives = 147/234 (62.82%), Query Frame = -2
Query:  109 VSREARTSI--ARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGENKD-TSVDVHVNS--GNQ-GTQAERRPRRT-ALD-ILPFGLMDPSFPTRTMRQMLDTMDRLLEDT-MAFPGRSRAG-GGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEA-----GGDPSWSGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTNVERKVIDVQI 765
            VS  AR  I  A R   P +V LP++ R      Q   A A  EN+D T+VDVHVN   GNQ G   +RRPRR+ ALD I PFGL+DP  P RTMRQMLDTMDR+ +D  + FP   R     G+VR PWD+ E++ E++MRFDMPGL             LVI+GEH+ EE       GD  W   S SSYD RL LPD C+K KV+AELKNGVL +++PKT VERKVIDVQ+
Sbjct:   11 VSPAARLPIRAAWRRARP-TVGLPSSGRAR----QLAVASAAQENRDNTAVDVHVNQDGGNQQGNAVQRRPRRSSALDGISPFGLVDPMSPMRTMRQMLDTMDRIFDDVALGFPATPRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALPDECDKSKVRAELKNGVLLVTVPKTEVERKVIDVQV 239          
BLAST of CN188696 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.540e-18
Identity = 76/215 (35.35%), Postives = 111/215 (51.63%), Query Frame = -2
Query:  127 VSREARTSIARRNVAPCSVTLPATSRKGAYRLQAVRA-QAGGENKDTSVDVHVNSGNQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEK-DKVKAELKNGVLYISIPKTNVERK 765
            + R   +SIA R+    SV  PA S +  +   AVR+    GEN D  VD++  S          PRR   D     + DP  PTR++ Q+L+ MD+ +E+ +     +R  G    R  WDIKE+++ + +R DMPGL             LVI+GE + EE GG+   SG     + +R+ LPD   K D++KAE+KNGVL + IPK   + +
Sbjct:    7 LKRLLSSSIAPRSR---SVLRPAVSSR-LFNTNAVRSYDDDGENGD-GVDLYRRSV---------PRRRG-DFFS-DVFDPFSPTRSVSQVLNLMDQFMENPLL--SATRGMGASGARRGWDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGEGKNEEDGGEEGESGN--RRFTSRIGLPDKIYKIDEIKAEMKNGVLKVVIPKMKEQER 201          
BLAST of CN188696 vs. ExPASy Swiss-Prot
Match: HS235_ARATH (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.5 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.904e-17
Identity = 53/138 (38.41%), Postives = 80/138 (57.97%), Query Frame = -2
Query:  127 LMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEK-DKVKAELKNGVLYISIPKTNVERK 537
            ++DP  PTR++ QML+ MD++ E  +     +R  G   VR  W++KE+++ + +R DMPGL             LVI+GE   EE G D S  G  F+S   R++LP+   K D++KAE+KNGVL + IPK   + +
Sbjct:   70 ILDPFTPTRSLSQMLNFMDQVSEIPLV--SATRGMGASGVRRGWNVKEKDDALHLRIDMPGLSREDVKLALEQNTLVIRGEGETEE-GEDVSGDGRRFTS---RIELPEKVYKTDEIKAEMKNGVLKVVIPKIKEDER 201          
BLAST of CN188696 vs. ExPASy Swiss-Prot
Match: HS22M_PEA (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum GN=HSP22 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.340e-16
Identity = 68/200 (34.00%), Postives = 101/200 (50.50%), Query Frame = -2
Query:  109 ATSRKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQGTQAERRPRRTALDILPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAGGDPSWSGASFSSYDTRLQLPDNCEK-DKVKAELKNGVLYISIPKTNVERK--VIDVQI 699
            A+S   ++   A+R Q    + D +VDV+ +S          PR    D+L   + DP  P R++ Q+L+ +D LL D       SR G        WD +E E+ + +R DMPGL             L IKGE  A+E+  +   SG  FSS   R+ LP+   K D +KAE+KNGVL +++PK   E +  VI+V++
Sbjct:   25 ASSASRSFNTNAMR-QYDQHSDDRNVDVYRHSF---------PRTRRDDLLLSDVFDPFSPPRSLSQVLNMVD-LLTDNPVLSAASRRG--------WDARETEDALFLRLDMPGLGKEDVKISVEQNTLTIKGEEGAKES-EEKEKSGRRFSS---RIDLPEKLYKIDVIKAEMKNGVLKVTVPKMKEEERNNVINVKV 201          
The following BLAST results are available for this feature:
BLAST of CN188696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
HS22C_PETHY3.059e-6761.84Small heat shock protein, chloroplastic OS=Petunia... [more]
HS21C_SOLLC1.163e-6660.26Small heat shock protein, chloroplastic OS=Solanum... [more]
HS22C_SOYBN6.379e-6567.03Small heat shock protein, chloroplastic (Fragment)... [more]
HS21C_PEA2.680e-6356.25Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS25P_ARATH1.988e-5858.4125.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS21C_WHEAT5.243e-5150.00Small heat shock protein, chloroplastic OS=Triticu... [more]
HS26P_ORYSJ3.757e-4952.1426.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
HS23M_ARATH1.540e-1835.3523.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS235_ARATH2.904e-1738.4123.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS22M_PEA9.340e-1634.00Heat shock 22 kDa protein, mitochondrial OS=Pisum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006J12_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006J12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188696 ID=CN188696; Name=CN188696; organism=Citrus sinensis; type=EST; length=859bp
CCTTTTTTTCATAATTTCTCAATTATTTATGCACTTAAAAAGCTGGACAT
GTCCATTACAAAACCTTAACATACACATTGCGCTAGGCACACATCATTAT
AATTACAGAATCTGAACATCAATGACCTTGCGCTCCACATTGGTCTTAGG
AATTGAAATGTAAAGAACACCATTCTTGAGCTCTGCCTTGACCTTATCTT
TCTCACAGTTATCAGGAAGCTGGAGACGAGTATCGTAAGAGCTAAAACTT
GCACCAGACCAACTCGGATCACCTCCAGCTTCTTCTGCCCTGTGCTCTCC
TTTAATGACAAGGACATCATCTTCCACCGACACTTTGACATCCTCCTTAG
AGAGTCCAGGCATGTCAAATCTCATTTTGATCTCATTTTCCTCCTCTTTG
ATGTCCCACGGTGTTCTCACCTGGCCTCCCCCGCCAGCCCGGCTCCTCCC
CGGAAAAGCCATCGTATCCTCTAATAGACGGTCCATTGTGTCCAGCATCT
GCCGCATTGTCCTCGTTGGAAACGAGGGATCCATCAAACCGAAAGGTAAA
ATATCGAGAGCCGTTCTTCGAGGCCTCCTCTCCGCTTGGGTTCCTTGGTT
ACCGGAATTAACATGGACGTCAACCGAAGTATCCTTGTTCTCCCCACCAG
CCTGAGCTCTCACGGCTTGTAGCCGATAGGCGCCTTTCCTTGACGTTGCC
GGTAAGGTTACCGAGCATGGCGCCACATTTCTCCTAGCTATTGAGGTCCT
GGCCTCGCGCGATACCAAGGGTGATGATGATGAGATAGATAATGTTGCAG
CCATTTATTTTCACTTTGTTTTCTGAGCACTTGAGTTTTTTTTTATTTGT
ATTTGACTT
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