CN181718

Overview
NameCN181718
Unique NameCN181718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1071 contig Csv1_Contig1071:86..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181718 vs. ExPASy Swiss-Prot
Match: ALAM_DICDI (Probable alanine aminotransferase, mitochondrial OS=Dictyostelium discoideum GN=gpt PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.047e-49
Identity = 104/208 (50.00%), Postives = 140/208 (67.31%), Query Frame = 1
Query:   70 KALDYESMNENVKKVQYAVRGELYLRAS----ELQK---EGKK------IIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDINDLQ 654
            K++  +++ +NV+  QYAVRGEL +RA     +LQK   EG K      I++ N+GNP  L Q+PLT+ RQVV+L + P LLD+P V  ++PAD I+RAK  L   +   GAYS+S+GI  V + VA+FIERRDG+ SDP  IFLTDGAS GV + L  +I+   DG+L+P+PQYPLYSATI L  GS + Y L E   W L+I+ L+
Sbjct:   52 KSMTIDNICQNVRNAQYAVRGELVIRAEAISHQLQKQKTEGTKTLPFEEIVYCNIGNPQQLKQKPLTYFRQVVSLVECPDLLDNPYVEKIYPADVISRAKEILGSINNTTGAYSNSQGIGLVLRSVADFIERRDGHKSDPSEIFLTDGASVGVQRILKLLIKDRSDGILIPIPQYPLYSATIELYNGSQLGYLLNEEKGWSLEISQLE 259          
BLAST of CN181718 vs. ExPASy Swiss-Prot
Match: ALA2_PANMI (Alanine aminotransferase 2 OS=Panicum miliaceum PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.285e-49
Identity = 99/201 (49.25%), Postives = 139/201 (69.15%), Query Frame = 1
Query:   85 ESMNENVKKVQYAVRGELYLRASELQKEGK---------KIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSG-GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDINDLQQ 657
            E++N  V K +YAVRGE+ + A  LQ++ +         +I++ N+GNP +LGQ+P+TF R+V+ALC  P LL+      +F ADAI+RAK  LS   G   GAYS S+GI G+R  +A  I  RDG+P++ + IF+TDGAS GV   +  +IR E DG+L P+PQYPLYSA+I+L GG+LVPYYL+E   WGL+I+DL++
Sbjct:    8 ENLNPKVLKCEYAVRGEIVIHAQHLQQQLQTQPGSLPFDEILYCNIGNPQSLGQQPVTFFREVLALCDHPCLLEKEETKSLFSADAISRAKQILSTIPGRATGAYSHSQGIKGLRDAIAAGIASRDGFPANADDIFVTDGASPGVHMMMQLLIRNEKDGILCPIPQYPLYSASIALHGGTLVPYYLDEKTGWGLEISDLKK 208          
BLAST of CN181718 vs. ExPASy Swiss-Prot
Match: ALA2_HORVU (Alanine aminotransferase 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.177e-48
Identity = 97/201 (48.26%), Postives = 140/201 (69.65%), Query Frame = 1
Query:   85 ESMNENVKKVQYAVRGELYLRASELQKEGK---------KIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSG-GLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDINDLQQ 657
            +++N  V K +YAVRGE+ + A  LQ++ K         +I++ N+GNP +LGQ+P+TF R+V+ALC  P LL    +  +F AD+I+RAK  L++  G   GAYS S+GI G+R  +A  I  RDG+P++ + IFLTDGAS GV   +  +IR E DG+LVP+PQYPLYSA+I+L GG+LVPYYL E+  WGL+ +D+++
Sbjct:    8 DNLNPKVLKCEYAVRGEIVIHAQRLQEQLKTQPGSLPFDEILYCNIGNPQSLGQQPVTFFREVLALCDHPDLLQREEIKTLFSADSISRAKQILAMIPGRATGAYSHSQGIKGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKK 208          
BLAST of CN181718 vs. ExPASy Swiss-Prot
Match: ALAT2_DANRE (Alanine aminotransferase 2-like OS=Danio rerio GN=gpt2l PE=2 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 2.714e-45
Identity = 103/209 (49.28%), Postives = 138/209 (66.03%), Query Frame = 1
Query:   70 KALDYESMNENVKKVQYAVRGELYLRASELQKEGKK--------IIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGG-LGAYSDSRGIPGVRKEVAEFIERRDG-YPSDPELIFLTDGASKGVMQTLNCVIRGEG---DGVLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDINDLQQ 657
            K L  ++MN NVKKV YAVRG +  RA +++KE K+        +I  N+G+ HA+GQRP+TF RQV+ALC  P LLDD      FP DA  RA+  L    G  +GAY+ S+GI  VR++VA++IERRDG  PSDP+ I+LT GAS G++  L  +  GEG    GV++ +PQYPLYSA+I+ LG   + YYL E   W LDI++LQ+
Sbjct:   72 KVLTVDTMNANVKKVDYAVRGPIVQRAVQIEKELKEGVKKPFDEVIKANIGDAHAMGQRPITFFRQVMALCTYPQLLDDNK----FPEDAKNRARRILQSCGGNSIGAYTTSQGIDCVRQDVAKYIERRDGGIPSDPDNIYLTTGASDGIVTILKLLTAGEGLTRTGVMISIPQYPLYSASIAELGAVQINYYLNEEKCWSLDISELQR 276          
BLAST of CN181718 vs. ExPASy Swiss-Prot
Match: ALAT2_MOUSE (Alanine aminotransferase 2 OS=Mus musculus GN=Gpt2 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.334e-43
Identity = 95/208 (45.67%), Postives = 135/208 (64.90%), Query Frame = 1
Query:   70 KALDYESMNENVKKVQYAVRGELYLRASELQKEGKK--------IIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGG-LGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEG---DGVLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDINDLQQ 657
            + L  ESMN  VK V+YAVRG + L+A E++ E ++        +I  N+G+ HA+GQ+P+TF RQV+ALC  P LL+ P+    FP DA  RA+  L    G  LG+YS S+G+  +R++VA FI RRDG P+DP+ I+LT GAS G+   L  ++ G G    GV++P+PQYPLYSA IS L    V YYL+E   W L++++L++
Sbjct:   46 RILTLESMNPQVKAVEYAVRGPIVLKAGEIEMELQRGIKKPFTEVIRANIGDAHAMGQQPITFLRQVMALCTYPNLLNSPS----FPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAFITRRDGVPADPDNIYLTTGASDGISTILKLLVSGGGKSRTGVMIPIPQYPLYSAVISELDAVQVNYYLDEENCWALNVDELRR 249          
BLAST of CN181718 vs. ExPASy Swiss-Prot
Match: ALAT1_HUMAN (Alanine aminotransferase 1 OS=Homo sapiens GN=GPT PE=1 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 5.660e-43
Identity = 98/209 (46.89%), Postives = 133/209 (63.64%), Query Frame = 1
Query:   70 KALDYESMNENVKKVQYAVRGELYLRASELQKEGKK--------IIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSG-GLGAYSDSRGIPGVRKEVAEFIERRDG-YPSDPELIFLTDGASKGVMQTLNCVIRGEGD---GVLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDINDLQQ 657
            K L  + MN  V++V+YAVRG +  RA EL++E ++        +I  N+G+  A+GQRP+TF RQV+ALC  P LL  PN    FP DA  RA+  L    G  LGAYS S GI  +R++VA +IERRDG  P+DP  +FL+ GAS  ++  L  ++ GEG    GVL+P+PQYPLYSAT++ LG   V YYL+E   W LD+ +L +
Sbjct:   19 KVLTLDGMNPRVRRVEYAVRGPIVQRALELEQELRQGVKKPFTEVIRANIGDAQAMGQRPITFLRQVLALCVNPDLLSSPN----FPDDAKKRAERILQACGGHSLGAYSVSSGIQLIREDVARYIERRDGGIPADPNNVFLSTGASDAIVTVLKLLVAGEGHTRTGVLIPIPQYPLYSATLAELGAVQVDYYLDEERAWALDVAELHR 223          
BLAST of CN181718 vs. ExPASy Swiss-Prot
Match: ALAT_SCHPO (Putative alanine aminotransferase OS=Schizosaccharomyces pombe GN=SPBC582.08 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.821e-41
Identity = 91/205 (44.39%), Postives = 122/205 (59.51%), Query Frame = 1
Query:   79 DYESMNENVKKVQYAVRGELYLRASELQKE---------GKKIIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPN---VGIVFPADAIARAKHYLSLTSGGLGAYSDSRGIPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQTLNCVIRGEGDGVLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDINDLQQ 657
            D  S+N+ V K  YAVRG L + A E+Q +           +I++ N+GNP  +GQ P+TF RQV++LCQ P LLD         +FP D + R+K  L   SG LGAYS S+GIP VR+ VA+FI  RDG+  +P  I+LT GAS      +  +I    DGV+VP PQYPLY A I L+ GS+V Y L E  NW +D +  ++
Sbjct:   29 DLNSLNQQVFKANYAVRGALAILADEIQDDLLENPSSYPFSEIVYANIGNPQQMGQSPITFVRQVLSLCQYPTLLDHAEEKWFQNLFPTDVVQRSKMLLK-ESGSLGAYSASQGIPLVRRHVADFIRARDGFDCEPSDIYLTSGASHAARLIMTLIIARPTDGVMVPAPQYPLYGAQIDLMSGSMVSYSLSEENNWDIDFDQFKK 232          
BLAST of CN181718 vs. ExPASy Swiss-Prot
Match: ALAT2_HUMAN (Alanine aminotransferase 2 OS=Homo sapiens GN=GPT2 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.821e-41
Identity = 95/209 (45.45%), Postives = 134/209 (64.11%), Query Frame = 1
Query:   70 KALDYESMNENVKKVQYAVRGELYLRASELQKEGKK--------IIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSGG-LGAYSDSRGIPGVRKEVAEFIERRDG-YPSDPELIFLTDGASKGVMQTLNCVIRGEGD---GVLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDINDLQQ 657
            + L  ESMN  VK V+YAVRG + L+A E++ E ++        +I  N+G+  A+GQ+P+TF RQV+ALC  P LLD P+    FP DA  RA+  L    G  LG+YS S+G+  +R++VA +I RRDG  P+DP+ I+LT GAS G+   L  ++ G G    GV++P+PQYPLYSA IS L    V YYL+E   W L++N+L++
Sbjct:   46 RILTLESMNPQVKAVEYAVRGPIVLKAGEIELELQRGIKKPFTEVIRANIGDAQAMGQQPITFLRQVMALCTYPNLLDSPS----FPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPLYSAVISELDAIQVNYYLDEENCWALNVNELRR 250          
BLAST of CN181718 vs. ExPASy Swiss-Prot
Match: ALAT1_RAT (Alanine aminotransferase 1 OS=Rattus norvegicus GN=Gpt PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 1.821e-41
Identity = 97/209 (46.41%), Postives = 134/209 (64.11%), Query Frame = 1
Query:   70 KALDYESMNENVKKVQYAVRGELYLRASELQKEGKK--------IIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSG-GLGAYSDSRGIPGVRKEVAEFIERRDG-YPSDPELIFLTDGASKGVMQTLNCVIRGEG---DGVLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDINDLQQ 657
            K L  ++MN  V++V+YAVRG +  RA EL++E ++        +I  N+G+  A+GQRP+TF RQV+ALC  P LL  P+    FP DA  RA+  L    G  LGAYS S GI  +R++VA++IERRDG  P+DP  IFL+ GAS  ++  L  ++ GEG    GVL+P+PQYPLYSA ++ L    V YYL+E   W LDI +L++
Sbjct:   19 KVLTLDTMNPCVRRVEYAVRGPIVQRALELEQELRQGVKKPFTEVIRANIGDAQAMGQRPITFFRQVLALCVYPNLLSSPD----FPEDAKRRAERILQACGGHSLGAYSISSGIQPIREDVAQYIERRDGGIPADPNNIFLSTGASDAIVTMLKLLVSGEGRARTGVLIPIPQYPLYSAALAELDAVQVDYYLDEERAWALDIAELRR 223          
BLAST of CN181718 vs. ExPASy Swiss-Prot
Match: ALAT1_MOUSE (Alanine aminotransferase 1 OS=Mus musculus GN=Gpt PE=2 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 1.821e-41
Identity = 97/209 (46.41%), Postives = 134/209 (64.11%), Query Frame = 1
Query:   70 KALDYESMNENVKKVQYAVRGELYLRASELQKEGKK--------IIFTNVGNPHALGQRPLTFPRQVVALCQAPFLLDDPNVGIVFPADAIARAKHYLSLTSG-GLGAYSDSRGIPGVRKEVAEFIERRDG-YPSDPELIFLTDGASKGVMQTLNCVIRGEG---DGVLVPVPQYPLYSATISLLGGSLVPYYLEETANWGLDINDLQQ 657
            K L  ++MN  V++V+YAVRG +  RA EL++E ++        +I  N+G+  A+GQRP+TF RQV+ALC  P LL  P+    FP DA  RA+  L    G  LGAYS S GI  +R++VA++IERRDG  P+DP  IFL+ GAS  ++  L  ++ GEG    GVL+P+PQYPLYSA ++ L    V YYL+E   W LDI +L++
Sbjct:   19 KVLTLDTMNPCVRRVEYAVRGPIVQRALELEQELRQGVKKPFTEVIRANIGDAQAMGQRPITFFRQVLALCVYPNLLSSPD----FPEDAKRRAERILQACGGHSLGAYSISSGIQPIREDVAQYIERRDGGIPADPNNIFLSTGASDAIVTMLKLLVAGEGRARTGVLIPIPQYPLYSAALAELDAVQVDYYLDEERAWALDIAELRR 223          
The following BLAST results are available for this feature:
BLAST of CN181718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
ALAM_DICDI4.047e-4950.00Probable alanine aminotransferase, mitochondrial O... [more]
ALA2_PANMI5.285e-4949.25Alanine aminotransferase 2 OS=Panicum miliaceum PE... [more]
ALA2_HORVU1.177e-4848.26Alanine aminotransferase 2 OS=Hordeum vulgare PE=2... [more]
ALAT2_DANRE2.714e-4549.28Alanine aminotransferase 2-like OS=Danio rerio GN=... [more]
ALAT2_MOUSE4.334e-4345.67Alanine aminotransferase 2 OS=Mus musculus GN=Gpt2... [more]
ALAT1_HUMAN5.660e-4346.89Alanine aminotransferase 1 OS=Homo sapiens GN=GPT ... [more]
ALAT_SCHPO1.821e-4144.39Putative alanine aminotransferase OS=Schizosacchar... [more]
ALAT2_HUMAN1.821e-4145.45Alanine aminotransferase 2 OS=Homo sapiens GN=GPT2... [more]
ALAT1_RAT1.821e-4146.41Alanine aminotransferase 1 OS=Rattus norvegicus GN... [more]
ALAT1_MOUSE1.821e-4146.41Alanine aminotransferase 1 OS=Mus musculus GN=Gpt ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181718 ID=CN181718; Name=CN181718; organism=Citrus sinensis; type=EST; length=659bp
GAGGGCCAACTGGGTCTCGTTTGACAATCTTTCTACTATCAAATGGGCGT
TTAGTACATCATGGCACCAAAGGCATTGGACTATGAGTCTATGAATGAAA
ACGTGAAGAAGGTTCAATATGCTGTTAGAGGAGAGTTGTATCTTCGAGCT
TCTGAGCTTCAGAAGGAAGGGAAGAAGATTATTTTTACAAATGTTGGCAA
CCCTCATGCTCTGGGACAGAGGCCATTGACCTTCCCTCGGCAGGTGGTTG
CTCTTTGCCAGGCTCCATTTTTGCTAGATGATCCTAATGTAGGAATTGTC
TTCCCTGCTGATGCAATTGCAAGAGCTAAACATTATCTTTCCCTGACTTC
AGGGGGTCTAGGTGCTTACAGTGACTCCAGAGGTATTCCAGGTGTAAGGA
AGGAAGTAGCAGAGTTCATTGAAAGGCGTGATGGTTATCCAAGTGACCCA
GAACTCATATTTCTCACTGATGGTGCCAGCAAAGGAGTTATGCAGACTTT
AAATTGTGTCATCCGTGGTGAAGGGGATGGGGTTTTGGTTCCAGTTCCAC
AGTACCCACTGTACTCAGCTACCATATCTCTTTTAGGTGGTTCTCTTGTT
CCATACTACTTGGAAGAGACAGCAAATTGGGGTCTTGATATTAATGACCT
TCAGCAGTC
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