CN181711

Overview
NameCN181711
Unique NameCN181711
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181711_ssr360 microsatellite CN181711_ssr360:360..371. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10452 contig Csv1_Contig10452:19..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181711 vs. ExPASy Swiss-Prot
Match: NACA2_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Arabidopsis thaliana GN=At3g49470 PE=2 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.568e-40
Identity = 92/139 (66.19%), Postives = 101/139 (72.66%), Query Frame = -2
Query:  196 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 612
            AMLKLGMKPVTGVSRVTIKRTKN+LFFISKPDVFKSP+SETYVIFGEAKIED           QFRMP++G+   + +                      E RDIDLVMTQAGVSRSKAVKALK+H+GDIVSAIMELTT
Sbjct:   79 AMLKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIFGEAKIEDLSSQLQTQAAQQFRMPEIGATSQRAEASTATVEAQVEEDEEEIDETGVEARDIDLVMTQAGVSRSKAVKALKSHDGDIVSAIMELTT 217          
BLAST of CN181711 vs. ExPASy Swiss-Prot
Match: NACA4_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 4 OS=Arabidopsis thaliana GN=At4g10480 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.119e-37
Identity = 87/139 (62.59%), Postives = 96/139 (69.06%), Query Frame = -2
Query:  196 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 612
            AMLKLGMKPVT VSRVTIKR+KN+LF ISKPDVFKSPNSETYVIFGEAKI+D           +F+MPD+ S++   D                      E +DIDLVMTQAGVSR KAVKALK  NGDIVSAIMELTT
Sbjct:   74 AMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNSETYVIFGEAKIDDMSSQLQAQAAQRFKMPDVASMIPNTDGSEAATVAQEEEDDEDVDETGVEAKDIDLVMTQAGVSRPKAVKALKESNGDIVSAIMELTT 212          
BLAST of CN181711 vs. ExPASy Swiss-Prot
Match: NACA1_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Arabidopsis thaliana GN=At3g12390 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.679e-34
Identity = 83/139 (59.71%), Postives = 97/139 (69.78%), Query Frame = -2
Query:  196 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 612
            AMLKLGMKP+TGVSRVT+K++KNILF ISKPDVFKSP S+TYVIFGEAKIED           QF+ PD+ +V++K +                      EP+DI+LVMTQAGVSR  AVKALK  +GDIVSAIMELTT
Sbjct:   69 AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQIQSQAAEQFKAPDLSNVISKGE----SSSAAVVQDDEEVDEEGVEPKDIELVMTQAGVSRPNAVKALKAADGDIVSAIMELTT 203          
BLAST of CN181711 vs. ExPASy Swiss-Prot
Match: NACA5_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 5 OS=Arabidopsis thaliana GN=At1g33040 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 4.885e-34
Identity = 79/139 (56.83%), Postives = 95/139 (68.35%), Query Frame = -2
Query:  196 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 612
            A+LKLGMKPV+ VSRVTIKR KN+LF ISKPDV+KSPN+ETYVIFGEAK++D           +F+MPD+ S++                          E RDIDLVMTQAGVS++KAV ALK ++GDIVSAIMELTT
Sbjct:   71 AVLKLGMKPVSDVSRVTIKRAKNVLFVISKPDVYKSPNAETYVIFGEAKVDDLSSQLQTQAAQRFKMPDVTSMLPNAGSEATMAPLAEEEDEDDVDDTGVEARDIDLVMTQAGVSKAKAVSALKANDGDIVSAIMELTT 209          
BLAST of CN181711 vs. ExPASy Swiss-Prot
Match: NACA3_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 3 OS=Arabidopsis thaliana GN=At5g13850 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.088e-33
Identity = 81/140 (57.86%), Postives = 98/140 (70.00%), Query Frame = -2
Query:  196 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVMAKPD-XXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 612
            AMLKLGMKP+TGVSRVT+K++KNILF ISKPDVFKSP S+TYVIFGEAKIED           QF+ P++ +V+++ +                       EP+DI+LVMTQAGVS+ +AVKALK  NGDIVSAIMELTT
Sbjct:   65 AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQLQSQAAEQFKAPNLSNVISQGETSSAATAAAVQDDDDEEVDEEGVEPKDIELVMTQAGVSKPRAVKALKLANGDIVSAIMELTT 204          
BLAST of CN181711 vs. ExPASy Swiss-Prot
Match: NACA_PINTA (Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.856e-33
Identity = 81/139 (58.27%), Postives = 95/139 (68.35%), Query Frame = -2
Query:  196 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELTT 612
            AMLKLGMKPV+GVSRVTIK++KNILF IS PDVFKSP S+TY+ FGEAKIED           QF+ P++  V  KP+                      EP+DI+LVMTQAGVSR+KAVKALK  +GDIVSAIM+LTT
Sbjct:   72 AMLKLGMKPVSGVSRVTIKKSKNILFVISNPDVFKSPTSDTYIAFGEAKIEDLSSQLQTQAAEQFKAPNLSHVTMKPE-----SSTAAQEDEDEVDDTGVEPKDIELVMTQAGVSRTKAVKALKAADGDIVSAIMDLTT 205          
BLAST of CN181711 vs. ExPASy Swiss-Prot
Match: NACA_ORENI (Nascent polypeptide-associated complex subunit alpha OS=Oreochromis niloticus GN=naca PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.865e-27
Identity = 67/138 (48.55%), Postives = 90/138 (65.22%), Query Frame = -2
Query:  199 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 612
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED           +F++P  G  ++                         E +DI+LVM+QA VSR+KAV+ALK +N DIV+AIMELT
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVP--GETVSNVQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNNNDIVNAIMELT 214          
BLAST of CN181711 vs. ExPASy Swiss-Prot
Match: NACAD_MOUSE (NAC-alpha domain-containing protein 1 OS=Mus musculus GN=Nacad PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.683e-26
Identity = 67/141 (47.52%), Postives = 89/141 (63.12%), Query Frame = -2
Query:  199 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVMA---KPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 612
            AM KLG++ + GV+R+TI+++KNILF I+KPDVFKSP S+TYV+FGEAKIED           +F++P   S +     P                       EPRDI+LVM QA V+R+KAV+ALK ++ DIV+AIMELT
Sbjct: 1363 AMSKLGLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDLSQQVHKAAAEKFKVPSEPSALVPELSPGPRVRPECEEQEEEDEEVEEAGLEPRDIELVMAQANVTRAKAVRALKDNHSDIVNAIMELT 1503          
BLAST of CN181711 vs. ExPASy Swiss-Prot
Match: NACA_XENTR (Nascent polypeptide-associated complex subunit alpha OS=Xenopus tropicalis GN=naca PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.174e-25
Identity = 65/138 (47.10%), Postives = 89/138 (64.49%), Query Frame = -2
Query:  199 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 612
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED           +F++   G  ++                         E +DI+LVM+QA VSR+KAV+ALK ++ DIV+AIMELT
Sbjct:   78 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKV--QGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 213          
BLAST of CN181711 vs. ExPASy Swiss-Prot
Match: NACA_XENLA (Nascent polypeptide-associated complex subunit alpha OS=Xenopus laevis GN=naca PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.174e-25
Identity = 65/138 (47.10%), Postives = 89/138 (64.49%), Query Frame = -2
Query:  199 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXQFRMPDMGSVMAKPDXXXXXXXXXXXXXXXXXXXXXXEPRDIDLVMTQAGVSRSKAVKALKTHNGDIVSAIMELT 612
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED           +F++   G  ++                         E +DI+LVM+QA VSR+KAV+ALK ++ DIV+AIMELT
Sbjct:   77 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKV--QGETVSNIQENTQTPTVQEESEEEEVDEAGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELT 212          
The following BLAST results are available for this feature:
BLAST of CN181711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
NACA2_ARATH1.568e-4066.19Nascent polypeptide-associated complex subunit alp... [more]
NACA4_ARATH2.119e-3762.59Nascent polypeptide-associated complex subunit alp... [more]
NACA1_ARATH1.679e-3459.71Nascent polypeptide-associated complex subunit alp... [more]
NACA5_ARATH4.885e-3456.83Nascent polypeptide-associated complex subunit alp... [more]
NACA3_ARATH1.088e-3357.86Nascent polypeptide-associated complex subunit alp... [more]
NACA_PINTA1.856e-3358.27Nascent polypeptide-associated complex subunit alp... [more]
NACA_ORENI9.865e-2748.55Nascent polypeptide-associated complex subunit alp... [more]
NACAD_MOUSE1.683e-2647.52NAC-alpha domain-containing protein 1 OS=Mus muscu... [more]
NACA_XENTR3.174e-2547.10Nascent polypeptide-associated complex subunit alp... [more]
NACA_XENLA3.174e-2547.10Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001F22_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001F22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181711 ID=CN181711; Name=CN181711; organism=Citrus sinensis; type=EST; length=772bp
GGCCCTTGGAGGAAGATACTACTAACCATTAAAACAACTAGCGAGGAGGA
TTCTCATCCCCACTGCAAAAGAAATTGTATCTGCAACAGAAATTGCATTA
AGTGCACAAAAATAGAGTAGTAATTCAGTCATCTCACCGACTACAATAAC
TAAATTCATCGACAGAAAAATACTGCATGGAAGCAAATCTACTCAAGTAG
TAAGCTCCATGATAGCACTAACAATGTCTCCATTATGTGTCTTCAGAGCT
TTGACAGCCTTGCTTCTTGAGACACCGGCCTGTGTCATGACCAAATCAAT
GTCCCGAGGCTCAACTGCCGTCTCATCAACTTCCTCCTCTTCCTCATCTT
GTTGTGCACCAGCAGCAGCAGAAGAGGCATCTGGTTTCGCCATCACCGAT
CCCATGTCAGGCATCCTGAACTGCTGGGCAGCCTGTGTCTGCAGCTGGGA
GCTCAAATCCTCTATTTTGGCTTCCCCAAATATGACGTACGTTTCAGAAT
TTGGGCTCTTGAAAACATCAGGCTTTGAGATGAAAAATAGTATATTTTTG
GTTCTCTTGATGGTTACCCTGCTAACTCCTGTTACAGGTTTCATGCCCAA
CTTCAGCATTGCCTTGCGGCTCTTTTTCTCACTTCTGCTCTGCTTTGAAC
TCCCTCCTTGAGCTCCATCGTCTTTGTTGTCATCGTCGTCCTCGTCATCA
TCGTCATTGTCGTGGTCATCATCTTCTTCCTCATCGTCCTTAACATCTTC
AACTACAGGCTCATCCTCATCC
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