CN181708

Overview
NameCN181708
Unique NameCN181708
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN181708 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.109e-11
Identity = 30/33 (90.91%), Postives = 33/33 (100.00%), Query Frame = -1 
Query:  534 TKVFHPNINSNGSICLDILKEQWSPALTVSKMV 632
            TKVFHPNINSNGSICLDILKEQWSPALT+SK++
Sbjct:   71 TKVFHPNINSNGSICLDILKEQWSPALTISKVL 103
[Close]
BLAST of CN181708 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.109e-11
Identity = 30/33 (90.91%), Postives = 33/33 (100.00%), Query Frame = -1 
Query:  534 TKVFHPNINSNGSICLDILKEQWSPALTVSKMV 632
            TKVFHPNINSNGSICLDILKEQWSPALT+SK++
Sbjct:   71 TKVFHPNINSNGSICLDILKEQWSPALTISKVL 103
[Close]
BLAST of CN181708 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.109e-11
Identity = 30/33 (90.91%), Postives = 33/33 (100.00%), Query Frame = -1 
Query:  534 TKVFHPNINSNGSICLDILKEQWSPALTVSKMV 632
            TKVFHPNINSNGSICLDILKEQWSPALT+SK++
Sbjct:   71 TKVFHPNINSNGSICLDILKEQWSPALTISKVL 103
[Close]
BLAST of CN181708 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.109e-11
Identity = 30/33 (90.91%), Postives = 33/33 (100.00%), Query Frame = -1 
Query:  534 TKVFHPNINSNGSICLDILKEQWSPALTVSKMV 632
            TKVFHPNINSNGSICLDILKEQWSPALT+SK++
Sbjct:   71 TKVFHPNINSNGSICLDILKEQWSPALTISKVL 103
[Close]
BLAST of CN181708 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.061e-11
Identity = 29/33 (87.88%), Postives = 33/33 (100.00%), Query Frame = -1 
Query:  534 TKVFHPNINSNGSICLDILKEQWSPALTVSKMV 632
            TKVFHPN+NSNGSICLDILKEQWSPALT+SK++
Sbjct:   71 TKVFHPNVNSNGSICLDILKEQWSPALTISKVL 103
[Close]
BLAST of CN181708 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.304e-11
Identity = 30/33 (90.91%), Postives = 33/33 (100.00%), Query Frame = -1 
Query:  534 TKVFHPNINSNGSICLDILKEQWSPALTVSKMV 632
            TKV+HPNINSNGSICLDILKEQWSPALTVSK++
Sbjct:   71 TKVYHPNINSNGSICLDILKEQWSPALTVSKVL 103
[Close]
BLAST of CN181708 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 29/33 (87.88%), Postives = 33/33 (100.00%), Query Frame = -1 
Query:  534 TKVFHPNINSNGSICLDILKEQWSPALTVSKMV 632
            TKV+HPNINSNGSICLDILKEQWSPALT+SK++
Sbjct:   71 TKVYHPNINSNGSICLDILKEQWSPALTISKVL 103
The following BLAST results are available for this feature:
BLAST of CN181708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
UBC9_ARATH3.109e-1190.91SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC8_ARATH3.109e-1190.91Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC4_SOLLC3.109e-1190.91Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC10_ARATH3.109e-1190.91Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC28_ARATH4.061e-1187.88Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC30_ARATH5.304e-1190.91Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC11_ARATH6.927e-1187.88Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001F20_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001F20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181708 ID=CN181708; Name=CN181708; organism=Citrus sinensis; type=EST; length=632bp
GAGGATTCAATGTCATTACCACTAATACATAATAAAACATCCCAAATAAA
AAAAAAAAGAATGCCAAAATATAAAATAATAGTTAAATTCCCATTAAACT
CCAATAAAAGTAATTCAAATTCCGGCCACCAAGCCAAACTCCCCAACAAA
ACTTCCAAAGATTAATGGAAATATTCCAACAACAAGACTTCCAGAAGCAA
TACCCTCTTCCAGCGGCAATACATTGAATAATCTGAGAACTTATTACATT
GTTTAGAACTACAACACTAAAACATAAAAGCCAAATAACTATATTAAACT
CATAAAAAGCTTACAATTTATAGGAGAAACTGAAAGTATCAATCAATTTT
GAGGTAATATATAAAACAATTTAATTTTGGCTGTAAGAAAATAGTAGAAA
ATTTAAAGTACCTTTAGTCAAAAGGCTCAAGCATTTACAGAGTGAGTTAG
GTTCTGAGAATGGCCAATATCACCTGAAATGTATTCAACAACCAATCATC
GTACGCACTATATCGCGCATTTGTTTACAACTTCACCATCTTTGAAACGG
TAAGCGCAGGACTCCACTGTTCTTTAAGGATATCAAGACAGATGCTTCCA
TTGCTGTTGATGTTCGGGTGGAAGACCTTGGT
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