CN181707

Overview
NameCN181707
Unique NameCN181707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181707_ssr148 microsatellite CN181707_ssr148:148..159. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2278 contig Csv1_Contig2278:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181707 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16
Identity = 39/41 (95.12%), Postives = 39/41 (95.12%), Query Frame = 2
Query:  584 MASKRILKELKDPQKDPPTSCSAGPAAEDMFHWQATIMGPS 706
            MASKRILKELKD QKDPPTSCSAGP AEDMFHWQATIMGPS
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPS 41          
BLAST of CN181707 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16
Identity = 39/41 (95.12%), Postives = 39/41 (95.12%), Query Frame = 2
Query:  584 MASKRILKELKDPQKDPPTSCSAGPAAEDMFHWQATIMGPS 706
            MASKRILKELKD QKDPPTSCSAGP AEDMFHWQATIMGPS
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPS 41          
BLAST of CN181707 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16
Identity = 39/41 (95.12%), Postives = 39/41 (95.12%), Query Frame = 2
Query:  584 MASKRILKELKDPQKDPPTSCSAGPAAEDMFHWQATIMGPS 706
            MASKRILKELKD QKDPPTSCSAGP AEDMFHWQATIMGPS
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPS 41          
BLAST of CN181707 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 2
Query:  584 MASKRILKELKDPQKDPPTSCSAGPAAEDMFHWQATIMGPS 706
            MASKRILKELKD QKDPPTSCSAGP AEDMFHWQATIMGP+
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPA 41          
BLAST of CN181707 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 2
Query:  584 MASKRILKELKDPQKDPPTSCSAGPAAEDMFHWQATIMGPS 706
            MASKRILKELKD QKDPPTSCSAGP AEDMFHWQATIMGP+
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPT 41          
BLAST of CN181707 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.280e-14
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 2
Query:  584 MASKRILKELKDPQKDPPTSCSAGPAAEDMFHWQATIMGP 703
            MASKRILKELKD QKDPP++CSAGP AEDMFHWQATIMGP
Sbjct:    1 MASKRILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGP 40          
BLAST of CN181707 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 2
Query:  584 MASKRILKELKDPQKDPPTSCSAGPAAEDMFHWQATIMGPS 706
            MA++RILKELK+ Q+DPP SCSAGP  EDMFHWQATIMGP+
Sbjct:    1 MATRRILKELKELQRDPPVSCSAGPTGEDMFHWQATIMGPN 41          
BLAST of CN181707 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 2
Query:  584 MASKRILKELKDPQKDPPTSCSAGPAAEDMFHWQATIMGPS 706
            MASKRI KEL+D Q+DPP SCSAGP  +DMF WQATIMGP+
Sbjct:    1 MASKRINKELRDLQRDPPVSCSAGPTGDDMFQWQATIMGPA 41          
BLAST of CN181707 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 2
Query:  584 MASKRILKELKDPQKDPPTSCSAGPAAEDMFHWQATIMGPS 706
            MA KRI KEL D  +DPP+SCSAGP  ED+FHWQATIMGPS
Sbjct:    1 MALKRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPS 41          
BLAST of CN181707 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 29/41 (70.73%), Postives = 33/41 (80.49%), Query Frame = 2
Query:  584 MASKRILKELKDPQKDPPTSCSAGPAAEDMFHWQATIMGPS 706
            MA KRI KEL D Q+DPP  CSAGP  +D+FHWQATIMGP+
Sbjct:    1 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPN 41          
The following BLAST results are available for this feature:
BLAST of CN181707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
UBC9_ARATH6.788e-1695.12SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC28_ARATH6.788e-1695.12Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC10_ARATH6.788e-1695.12Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC8_ARATH1.512e-1592.68Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC4_SOLLC1.512e-1592.68Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC11_ARATH1.280e-1490.00Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC29_ARATH5.379e-1378.05Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC30_ARATH1.014e-1175.61Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC1_MAGGR2.951e-1175.61Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UB2D4_HUMAN6.575e-1170.73Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001F20_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001F20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181707 ID=CN181707; Name=CN181707; organism=Citrus sinensis; type=EST; length=707bp
TTTCTTTGTTTTTTTCTTTTCTTCATTTTCTCGAGAAACCTTAACGAAAT
TTTCTCAGGAACCAAATAGTTTACAAATCCTTCGACAAACAGTTTACAAA
TCCTTCGATTACGAAGGAAAATGCAGTACCAGAGTTTAAAGCAGCATCAG
CAGCAGCAGCAAACACTGGTTCAACAAGCGCTTCTTCAACAAAAGTCTCT
CTACCATCCCGGCCTCTTAGCCACTCCCCAGGTCCAATTTCTCATTTGCA
TGTTGTTTCTCATCGCTTATGTGAATCCATTATGCCGTGATTTTGATTGT
GTTTTCATAATTTCAAGATTTGATTTGTTCACACTATTTAGGGTTAGCTT
GTTTGTTTTGGCTTATGTGAAACCATTACAACTCCGAACGTTCTTTCTCG
ACGATATTTGTGTTGAAGAACAAAACAAGGGGTTGTTAGAGGAGCAAGGC
GGGGGCGGCTTGACGACGTAGATCTGCTTCACCGTTTCGCTTTCTCGACG
CTATTACACTACGATCCTGTTCTCTGCCGCGCATGGTCTTAAGGTTCGTT
GTAGCTTTAATTTTAATAATCCCTTGAAGAGTCATGGCTTCAAAGCGTAT
TTTGAAGGAACTCAAGGATCCGCAAAAGGATCCTCCCACATCTTGCAGCG
CTGGCCCTGCGGCTGAAGACATGTTCCACTGGCAAGCCACAATTATGGGC
CCATCTG
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