CN181701

Overview
NameCN181701
Unique NameCN181701
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181701_ssr387 microsatellite CN181701_ssr387:387..407. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN181701 vs. ExPASy Swiss-Prot
Match: PER60_ARATH (Peroxidase 60 OS=Arabidopsis thaliana GN=PER60 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.308e-38
Identity = 86/197 (43.65%), Postives = 120/197 (60.91%), Query Frame = -2
Query:  122 GGGGRYEVQTGRRDGLVSLAQNVXXXXXXXXXXXPQTMAVFANKGLNLTDMVLLMGGHSVGVAHCSIFKDRLYNFRSTGRPDPTMDSFLANKLRARCPLDXXXXXXXTANNTVDLDQNPFQIPFLDNSYYRQLMLNRGVLEIDQELALHPLTRATVMSIANALDFPIQFGTAMVKMGAIEVLT-GMQGEIRRFCTAT 709
            GG  RYE+ TGR DG +S A  V            +T A F  + L+L DMVLL+GGH++GV HCS   DRLYNF++T +PDP+MD  L  +L A+CP         + +  + LDQN      +D S+Y+++ ++RGVL IDQ+LA+  LT   V  IAN  DF ++FG AMV +G++ V++    GEIRR C +T
Sbjct:  136 GGKTRYEIPTGRLDGKISSALLVDLPSPKMTVA--ETAAKFDQRKLSLNDMVLLLGGHTIGVTHCSFIMDRLYNFQNTQKPDPSMDPKLVEELSAKCP------KSSSTDGIISLDQNATSSNTMDVSFYKEIKVSRGVLHIDQKLAIDDLTSKMVTDIANGNDFLVRFGQAMVNLGSVRVISKPKDGEIRRSCRST 324          
BLAST of CN181701 vs. ExPASy Swiss-Prot
Match: PER57_ARATH (Peroxidase 57 OS=Arabidopsis thaliana GN=PER57 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.373e-32
Identity = 84/198 (42.42%), Postives = 109/198 (55.05%), Query Frame = -2
Query:  119 GGGRYEVQTGRRDGLVSLAQNVXXXXXXXXXXXPQTMAVFANKGLNLTDMVLLMGGHSVGVAHCSIFKDRLYNFRSTGRPDPTMDSFLANKLRARCPLDXXXXXXXTANNTVDLDQ-NPFQIPFLDNSYYRQLMLNRGVLEIDQELALHPLTRATVMSIA-NALDFPIQFGTAMVKMGAIEVLTGMQGEIRRFCTATN 706
            GG  Y + TGRRDG VS   N+              +++F NKG+N  D V L+G H+VG  +C +F DR+ +F+ TGRPDP+MD  L   LR  C            + T  LDQ +P +    DN +++Q+   RGVL++DQ LA  P TR  V   A N   F  QF  AMVKMGA++VLTG  GEIRR C   N
Sbjct:  131 GGPSYSIPTGRRDGRVS--NNLDVTLPGPTISVSGAVSLFTNKGMNTFDAVALLGAHTVGQGNCGLFSDRITSFQGTGRPDPSMDPALVTSLRNTC----------RNSATAALDQSSPLR---FDNQFFKQIRKRRGVLQVDQRLASDPQTRGIVARYANNNAFFKRQFVRAMVKMGAVDVLTGRNGEIRRNCRRFN 313          
BLAST of CN181701 vs. ExPASy Swiss-Prot
Match: PER28_ARATH (Peroxidase 28 OS=Arabidopsis thaliana GN=PER28 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.216e-32
Identity = 82/199 (41.21%), Postives = 108/199 (54.27%), Query Frame = -2
Query:  119 GGGGRYEVQTGRRDGLVSLAQNVXXXXXXXXXXXPQTMAVFANKGLNLTDMVLLMGGHSVGVAHCSIFKDRLYNFRSTGRPDPTMDSFLANKLRARCPLDXXXXXXXTANNTVDLDQN-PFQIPFLDNSYYRQLMLNRGVLEIDQELALHPLTRATVMSIANALD-FPIQFGTAMVKMGAIEVLTGMQGEIRRFCTATN 709
            GGG  Y V TGRRDG VS  ++               ++ F NKG+N+ D V L+G H+VG+A C  F DR+ NF+ TG PDP+MD  LA +LR  C +               LDQ+ P      DN ++ Q+   +G+L IDQ +A  P T   V+  A+  + F  QF  AMVKMGA++VLTG  GEIR  C A N
Sbjct:  132 GGGPSYVVPTGRRDGFVSNPEDANEILPPPFISVEGMLSFFGNKGMNVFDSVALLGAHTVGIASCGNFVDRVTNFQGTGLPDPSMDPTLAGRLRNTCAV---------PGGFAALDQSMPVTPVSFDNLFFGQIRERKGILLIDQLIASDPATSGVVLQYASNNELFKRQFAIAMVKMGAVDVLTGSAGEIRTNCRAFN 321          
BLAST of CN181701 vs. ExPASy Swiss-Prot
Match: PERN1_TOBAC (Peroxidase N1 OS=Nicotiana tabacum GN=poxN1 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.133e-29
Identity = 80/200 (40.00%), Postives = 104/200 (52.00%), Query Frame = -2
Query:  119 GGRYEVQTGRRDGLVSLAQNVXXXXXXXXXXXPQTMAVFANKGLNLTDMVLLMGGHSVGVAHCSIFKDRLYNFRSTGRPDPTMDSFLANKLRARCPLDXXXXXXXTANNTVDLDQNPFQIPFLDNSYYRQLMLNRGVLEIDQELALHPLTRATVMSIAN-----ALDFPIQFGTAMVKMGAIEVLTGMQGEIRRFCTATN 703
            G  + V TGRRDG VS A +             Q    F  KGLN  D+V L G H++G A C++ +DRL+NF STG PDP++D+    +LRA CP +        A+  V LD     +   D SY+  L   RGVLE DQ+L     T+  V           L F ++FG +MVKM  IEV TG  GEIR+ C+A N
Sbjct:  140 GLTWSVPTGRRDGRVSRAADAGDLPAFFDSVDIQKRK-FLTKGLNTQDLVALTGAHTIGTAGCAVIRDRLFNFNSTGGPDPSIDATFLPQLRALCPQN------GDASRRVGLDTG--SVNNFDTSYFSNLRNGRGVLESDQKLWTDASTQVFVQRFLGIRGLLGLTFGVEFGRSMVKMSNIEVKTGTNGEIRKVCSAIN 330          
BLAST of CN181701 vs. ExPASy Swiss-Prot
Match: PER39_ARATH (Peroxidase 39 OS=Arabidopsis thaliana GN=PER39 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.133e-29
Identity = 74/198 (37.37%), Postives = 105/198 (53.03%), Query Frame = -2
Query:  119 GGGRYEVQTGRRDGLVSLAQNVXXXXXXXXXXXPQTMAVFANKGLNLTDMVLLMGGHSVGVAHCSIFKDRLYNFRSTGRPDPTMDSFLANKLRARCPLDXXXXXXXTANNTVDLDQNPFQIPFLDNSYYRQLMLNRGVLEIDQELALHPLTRATVMSIA--NALDFPIQFGTAMVKMGAIEVLTGMQGEIRRFCTATN 706
            GG  + V TGRRDG +S                   + +F N+GL++ D+VLL G H++GV+HCS F +RL+NF   G  DP++DS  A+ L++R  L         A+NT  ++ +P      D SYYR ++  RG+ E D  L ++P   A V   A  +  +F  +F  +M KMG I V TG  GEIRR C   N
Sbjct:  136 GGPTWNVPTGRRDGRISNFAEAMNNIPPPFGNFTTLITLFGNQGLDVKDLVLLSGAHTIGVSHCSSFSNRLFNFTGVGDQDPSLDSEYADNLKSRRCLS-------IADNTTKVEMDPGSRNTFDLSYYRLVLKRRGLFESDAALTMNPAALAQVKRFAGGSEQEFFAEFSNSMEKMGRIGVKTGSDGEIRRTCAFVN 326          
BLAST of CN181701 vs. ExPASy Swiss-Prot
Match: PER2_ARAHY (Cationic peroxidase 2 OS=Arachis hypogaea GN=PNC2 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.570e-28
Identity = 81/201 (40.30%), Postives = 104/201 (51.74%), Query Frame = -2
Query:  119 GGGRYEVQTGRRDGLVSLAQNVXXXXXXXXXXXPQTMAVFANKGLNLTDMVLLMGGHSVGVAHCSIFKDRLYNFRSTGRPDPTMDSFLANKLRARCPLDXXXXXXXTANNTVDLDQNPFQIPFLDNSYYRQLMLNRGVLEIDQELALHPLTRATVMSIAN-----ALDFPIQFGTAMVKMGAIEVLTGMQGEIRRFCTATN 706
            GG  ++V TGRRDG VS A +V            Q    FA KGLN  D+V L+GGH++G + C  F +RL+NF  T   DP +D    + L+A CP +        A N V LD    Q  F D SY+  L   RGVL+ DQ L   P T++ V           L F ++FG +MVKM  I V TG  GEIR+ C+A N
Sbjct:  139 GGLSWQVPTGRRDGRVSQASDVSNLPAPSDSVDVQKQK-FAAKGLNTQDLVTLVGGHTIGTSECQFFSNRLFNFNGTAAADPAIDPSFVSNLQALCPQN------TGAANRVALDTGS-QFKF-DTSYFSNLRNRRGVLQSDQALWNDPSTKSFVQRYLGLRGFLGLTFNVEFGKSMVKMSNIGVKTGTDGEIRKICSAFN 330          
BLAST of CN181701 vs. ExPASy Swiss-Prot
Match: PER61_ARATH (Probable peroxidase 61 OS=Arabidopsis thaliana GN=PER61 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.679e-28
Identity = 76/197 (38.58%), Postives = 106/197 (53.81%), Query Frame = -2
Query:  119 GGGRYEVQTGRRDGLVSLAQNVXXXXXXXXXXXPQTMAVFANKGLNLTDMVLLMGGHSVGVAHCSIFKDRLYNFRSTGRPDPTMDSFLANKLRARCPLDXXXXXXXTANNTVDLDQNPFQIPFLDNSYYRQLMLNRGVLEIDQELALHPLTRATVMSIANAL-DFPIQFGTAMVKMGAIEVLTGMQGEIRRFCTATN 706
            G   Y V TGRRDG    A  V            +++A F +KGL++ DM  L+G HS+G  HCS   DRLYNF++TG+PDPTM++ L ++LR  CP           +  V L+ +        +SYY +++ +  VL +DQEL  +  ++      A+   DF   F  AM +MG+I VLTG  GEIRR C  TN
Sbjct:  144 GAPSYPVFTGRRDGGTLNADAVDLPSPSISVD--ESLAYFKSKGLDVLDMTTLLGAHSMGKTHCSYVVDRLYNFKNTGKPDPTMNTTLVSQLRYLCP---PRTQKGQTDPLVYLNPDSGSSNRFTSSYYSRVLSHNAVLRVDQELLNNDDSKEITQEFASGFEDFRKSFALAMSRMGSINVLTGTAGEIRRDCRVTN 335          
BLAST of CN181701 vs. ExPASy Swiss-Prot
Match: PER12_ARATH (Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.499e-28
Identity = 82/211 (38.86%), Postives = 106/211 (50.24%), Query Frame = -2
Query:   83 GGGRYEVQTGRRDGLVSLAQNVXXXXXXXXXXXP-QTMAVFANKGLNLTDMVLLMGGHSVGVAHCSIFKDRLYNFRSTGRPDPTMDSFLANKLRARCPLDXXXXXXXTANNTVDLDQNPFQIP-FLDNSYYRQLMLNRGVLEIDQELALHPLTRATVMSIA-NALDFPIQFGTAMVKMGAIEVLTGMQGEIRRFCTATNWPPFT*LIRIGL 706
            GG  Y V  GRRD L   +Q               Q +A FAN+ LN+TD+V L GGH++G+AHC  F DRLY        DPTM+ F AN L+  CP            N+ +   N  + P   DN YY  LM  +G+   DQ+L +   TR  V S A +   F   F  AM+KMG + VLTG QGEIR  C+A N   F  ++  G+
Sbjct:  156 GGPDYAVPLGRRDSLAFASQETTLNNLPPPFFNASQLIADFANRNLNITDLVALSGGHTIGIAHCPSFTDRLY-----PNQDPTMNQFFANSLKRTCP----------TANSSNTQVNDIRSPDVFDNKYYVDLMNRQGLFTSDQDLFVDKRTRGIVESFAIDQQLFFDYFTVAMIKMGQMSVLTGTQGEIRSNCSARNTQSFMSVLEEGI 351          
BLAST of CN181701 vs. ExPASy Swiss-Prot
Match: PER26_ARATH (Probable peroxidase 26 OS=Arabidopsis thaliana GN=PER26 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.736e-27
Identity = 72/197 (36.55%), Postives = 103/197 (52.28%), Query Frame = -2
Query:  119 GGGRYEVQTGRRDGLVSLAQNVXXXXXXXXXXXPQTMAVFANKGLNLTDMVLLMGGHSVGVAHCSIFKDRLYNFRSTGRPDPTMDSFLANKLRARCPLDXXXXXXXTANNTVDLDQNPFQIPFLDNSYYRQLMLNRGVLEIDQELALHPLTRATVMSIANAL-DFPIQFGTAMVKMGAIEVLTGMQGEIRRFCTATN 706
            G   Y V TGRRDGL S  Q V            Q M+ F ++GLN+ DM  L+G HS+G  HCS   DRLYN+  TG+P PTM+ +  +++  +CP           +  V L+ +        +S+Y +++ N+ VLE+DQ+L  +  T+      +    DF   F  +M KMGAI VLT  +GEIR+ C   N
Sbjct:  144 GAPSYPVFTGRRDGLTSDKQTVDLPSPSISWD--QAMSYFKSRGLNVLDMATLLGSHSMGRTHCSYVVDRLYNYNKTGKPSPTMNKYFLSEMAKQCP---PRTRKGQTDPLVYLNPDSGSNHSFTSSFYSRILSNKSVLEVDQQLLYNDDTKQISKEFSEGFEDFRKSFALSMSKMGAINVLTKTEGEIRKDCRHIN 335          
BLAST of CN181701 vs. ExPASy Swiss-Prot
Match: PER3_ARATH (Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.268e-27
Identity = 72/199 (36.18%), Postives = 102/199 (51.26%), Query Frame = -2
Query:  119 GGGRYEVQTGRRDGLVSLAQNVXXXXXXXXXXXPQTMAVFANKGLNLTDMVLLMGGHSVGVAHCSIFKDRLYNFRSTGRPDPTMDSFLANKLRAR-CPLDXXXXXXXTANNTVDLDQNPFQIPFLDNSYYRQLMLNRGVLEIDQELALHPLTRATVMSI--ANALDFPIQFGTAMVKMGAIEVLTGMQGEIRRFCTATN 706
            GG  + V TGRRDG +S A                   +FAN+GL+L D+VLL G H++GV+HCS F +RLYNF   G  DP +DS  A  L++R CP           +N   ++ +P      D SYY+ ++  RG+ + D  L  +P T + +  I   +   F  +F  +M KMG I V TG  G +RR C+  N
Sbjct:  135 GGPNWSVPTGRRDGRISNAAEALANIPPPTSNITNLQTLFANQGLDLKDLVLLSGAHTIGVSHCSSFTNRLYNFTGRGGQDPALDSEYAANLKSRKCP--------SLNDNKTIVEMDPGSRKTFDLSYYQLVLKRRGLFQSDSALTTNPTTLSNINRILTGSVGSFFSEFAKSMEKMGRINVKTGSAGVVRRQCSVAN 325          
The following BLAST results are available for this feature:
BLAST of CN181701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
PER60_ARATH8.308e-3843.65Peroxidase 60 OS=Arabidopsis thaliana GN=PER60 PE=... [more]
PER57_ARATH1.373e-3242.42Peroxidase 57 OS=Arabidopsis thaliana GN=PER57 PE=... [more]
PER28_ARATH5.216e-3241.21Peroxidase 28 OS=Arabidopsis thaliana GN=PER28 PE=... [more]
PERN1_TOBAC4.133e-2940.00Peroxidase N1 OS=Nicotiana tabacum GN=poxN1 PE=1 S... [more]
PER39_ARATH4.133e-2937.37Peroxidase 39 OS=Arabidopsis thaliana GN=PER39 PE=... [more]
PER2_ARAHY1.570e-2840.30Cationic peroxidase 2 OS=Arachis hypogaea GN=PNC2 ... [more]
PER61_ARATH2.679e-2838.58Probable peroxidase 61 OS=Arabidopsis thaliana GN=... [more]
PER12_ARATH3.499e-2838.86Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=... [more]
PER26_ARATH1.736e-2736.55Probable peroxidase 26 OS=Arabidopsis thaliana GN=... [more]
PER3_ARATH2.268e-2736.18Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001F16_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001F16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181701 ID=CN181701; Name=CN181701; organism=Citrus sinensis; type=EST; length=710bp
TTTTTTTTTTTTGTCCATTGTATTATCCAACTATTATTTCATACATTTAA
GCCATCAAGAAAAAACACACTAAAAATTTAAGAAGACCTATTCTAATCAG
TTATGTAAATGGTGGCCAATTTGTGGCTGTACAGAATCTCCTAATCTCTC
CTTGCATGCCAGTGAGAACTTCAATGGCTCCCATTTTCACCATTGCAGTA
CCAAACTGTATGGGAAAGTCTAAGGCATTGGCTATGCTCATCACAGTGGC
TCTTGTCAATGGGTGTAATGCCAATTCTTGATCGATTTCGAGCACTCCTC
TGTTTAGCATTAACTGTCTGTAGTAAGAGTTGTCCAGGAATGGAATTTGA
AATGGATTTTGATCAAGATCAACCGTGTTGTTTGCCGTTGTTGTTGTTGT
TGTTGTTGTGTCTAGAGGGCACCGCGCTCTCAGCTTATTCGCGAGGAATG
AATCCATTGTGGGGTCGGGTCTGCCTGTACTTCTGAAATTGTAGAGACGA
TCTTTGAAGATTGAGCAATGTGCTACTCCTACAGAGTGACCTCCCATCAG
AAGAACCATGTCGGTAAGATTGAGGCCTTTGTTAGCAAACACGGCCATAG
TCTGAGGGATCGAAGCTGAAGGACCTGGGATAGAAATGGACACATTCTGA
GCTAGAGACACTAAACCGTCTCTTCTTCCTGTTTGCACCTCATATCTTCC
TCCGCCGCCC
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