CN181695

Overview
NameCN181695
Unique NameCN181695
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181695_ssr562 microsatellite CN181695_ssr562:562..571. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6255 contig Csv1_Contig6255:85..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181695 vs. ExPASy Swiss-Prot
Match: PFD6_BOVIN (Prefoldin subunit 6 OS=Bos taurus GN=PFDN6 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.410e-23
Identity = 54/121 (44.63%), Postives = 83/121 (68.60%), Query Frame = 3
Query:   18 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQSLQAGKAKA 380
            +Q++L+ +     +LQKD+ K+   R+K   QL EN +V +EL LL+    V+KL+GPVLVKQ+L EA A V KR++YI+AE+KR ++ L+DLE++   ++E + ++QQ  Q  QA KA A
Sbjct:    5 IQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLEQQSEQQRETLAQLQQEFQRAQAAKAGA 125          
BLAST of CN181695 vs. ExPASy Swiss-Prot
Match: PFD6_HUMAN (Prefoldin subunit 6 OS=Homo sapiens GN=PFDN6 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.093e-22
Identity = 54/121 (44.63%), Postives = 82/121 (67.77%), Query Frame = 3
Query:   18 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQSLQAGKAKA 380
            +Q++L+ +     +LQKD+ K+   R+K   QL EN +V +EL LL+    V+KL+GPVLVKQ+L EA A V KR++YI+AE+KR ++ L+DLE +   ++E + ++QQ  Q  QA KA A
Sbjct:    5 IQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEFQRAQAAKAGA 125          
BLAST of CN181695 vs. ExPASy Swiss-Prot
Match: PFD6_CANFA (Prefoldin subunit 6 OS=Canis familiaris GN=PFDN6 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.093e-22
Identity = 54/121 (44.63%), Postives = 82/121 (67.77%), Query Frame = 3
Query:   18 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQSLQAGKAKA 380
            +Q++L+ +     +LQKD+ K+   R+K   QL EN +V +EL LL+    V+KL+GPVLVKQ+L EA A V KR++YI+AE+KR ++ L+DLE +   ++E + ++QQ  Q  QA KA A
Sbjct:    5 IQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEFQRAQAAKAGA 125          
BLAST of CN181695 vs. ExPASy Swiss-Prot
Match: PFD6_MOUSE (Prefoldin subunit 6 OS=Mus musculus GN=Pfdn6 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.865e-22
Identity = 53/119 (44.54%), Postives = 81/119 (68.07%), Query Frame = 3
Query:   18 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQSLQAGKA 374
            +Q++L+ +     +LQKD+ K+   R+K   QL EN +V +EL LL+    V+KL+GPVLVKQ+L EA A V KR++YI+AE+KR ++ L+DLE +   ++E + ++QQ  Q  QA KA
Sbjct:    5 IQKKLQGEVEKYQQLQKDLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLDYITAEIKRYESQLRDLERQSEQQRETLAQLQQEFQRAQAAKA 123          
BLAST of CN181695 vs. ExPASy Swiss-Prot
Match: PFD6_CAEEL (Probable prefoldin subunit 6 OS=Caenorhabditis elegans GN=pfd-6 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.449e-16
Identity = 43/118 (36.44%), Postives = 73/118 (61.86%), Query Frame = 3
Query:   27 ELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQSLQAGKAKA 380
            + E + N L  L+KD  K    R++  ++L E++ V  EL L+   + VYKLIG VLV+QDL EA + V KR+E+I +E KR++A++ D+ +K   +++ +  +Q+  Q +    A+A
Sbjct:    6 KFEEEVNKLRTLEKDREKYFTSRQEMEMRLTESKNVKAELDLMESDSKVYKLIGAVLVRQDLEEARSTVEKRLEFIDSETKRVEASISDISKKCTEQRDKVMNMQKSFQMMAQAAAQA 123          
BLAST of CN181695 vs. ExPASy Swiss-Prot
Match: PFD6_DROME (Probable prefoldin subunit 6 OS=Drosophila melanogaster GN=CG7770 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.811e-16
Identity = 48/112 (42.86%), Postives = 65/112 (58.04%), Query Frame = 3
Query:   18 LQRELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQ 353
            L ++++ +      LQK   K  + R     QL EN+ VL EL LL     VYKL GPVLVKQ+L E+  NV KRIEYIS ELK     L+++E+     +E++ K QQ+ Q
Sbjct:    8 LYKKMQAEIESYQNLQKSCLKMVKQRAVLESQLNENKCVLDELNLLGPDNKVYKLFGPVLVKQELEESRQNVGKRIEYISKELKSSTDALENMEKDMLKHRESVAKYQQQCQ 119          
BLAST of CN181695 vs. ExPASy Swiss-Prot
Match: PFD6_CAEBR (Probable prefoldin subunit 6 OS=Caenorhabditis briggsae GN=pfd-6 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.912e-16
Identity = 40/111 (36.04%), Postives = 73/111 (65.77%), Query Frame = 3
Query:   27 ELETKANDLSKLQKDIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQSL 359
            + E + + L  L+KD  K    R++  ++L E++ V  EL L++  + VYKL+GPVLV+QDL EA + V KR+E+I +E+KR++A++ D+ +K   +++ +  +Q+  Q +
Sbjct:    6 KFEEEISKLKTLEKDREKYFSSRQEMEMRLTESKNVKAELDLMDSDSKVYKLMGPVLVRQDLEEARSTVEKRLEFIESEIKRVEASITDVNKKSIEQRDKVMNMQKAFQMM 116          
BLAST of CN181695 vs. ExPASy Swiss-Prot
Match: PFD6_DICDI (Probable prefoldin subunit 6 OS=Dictyostelium discoideum GN=pfdn6 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.699e-13
Identity = 42/110 (38.18%), Postives = 63/110 (57.27%), Query Frame = 3
Query:   39 KANDLSKLQK-DIGKNHQVRKKYTIQLGENELVLKELGLLNEGANVYKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATLQDLEEKQNSKKEAIFKVQQRIQSLQA 365
            KA D  ++ + ++ K    R K   QL ENE+V KE  LL   A +YKL GPVL KQ   EA   +  R++ I+  LK ++   +D+E+K   ++  IF+ Q +I+SL A
Sbjct:   24 KARDAFQVHETELQKLSASRSKLLTQLNENEMVKKEFDLLESEAKIYKLNGPVLFKQTKEEAENTITSRLDIINNNLKTIETNFKDIEKKAMEQRNKIFEYQNKIRSLTA 133          
The following BLAST results are available for this feature:
BLAST of CN181695 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PFD6_BOVIN6.410e-2344.63Prefoldin subunit 6 OS=Bos taurus GN=PFDN6 PE=2 SV... [more]
PFD6_HUMAN1.093e-2244.63Prefoldin subunit 6 OS=Homo sapiens GN=PFDN6 PE=1 ... [more]
PFD6_CANFA1.093e-2244.63Prefoldin subunit 6 OS=Canis familiaris GN=PFDN6 P... [more]
PFD6_MOUSE1.865e-2244.54Prefoldin subunit 6 OS=Mus musculus GN=Pfdn6 PE=2 ... [more]
PFD6_CAEEL4.449e-1636.44Probable prefoldin subunit 6 OS=Caenorhabditis ele... [more]
PFD6_DROME5.811e-1642.86Probable prefoldin subunit 6 OS=Drosophila melanog... [more]
PFD6_CAEBR9.912e-1636.04Probable prefoldin subunit 6 OS=Caenorhabditis bri... [more]
PFD6_DICDI2.699e-1338.18Probable prefoldin subunit 6 OS=Dictyostelium disc... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001F13_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001F13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181695 ID=CN181695; Name=CN181695; organism=Citrus sinensis; type=EST; length=650bp
CCCCGCACTCTTGAGAGCTTCAACGTGAACTCGAAACCAAAGCTAACGAT
CTCAGCAAACTCCAAAAAGATATTGGTAAAAATCATCAAGTGAGAAAGAA
GTACACTATTCAGCTTGGAGAAAACGAGCTCGTCCTTAAGGAGTTGGGTT
TGTTAAATGAAGGAGCAAATGTGTATAAATTGATTGGTCCAGTTCTTGTG
AAGCAAGATTTGGCAGAGGCTAATGCCAATGTGCGCAAGAGAATTGAATA
CATCTCTGCTGAGTTGAAGCGACTTGATGCAACTCTTCAGGATTTGGAAG
AAAAACAAAATAGCAAAAAGGAGGCGATCTTCAAAGTACAACAGAGGATA
CAATCACTTCAGGCAGGAAAAGCTAAGGCCTAATTAACTTTGTAGGAGTG
TTCGCTTTGCCCACAGCTCTGTTTCTGTTTTGCCTCAAGGGCGACTTGGT
GTTCTTTACTGTTAATTTTTGAGGCTATATAGTTGTGCGTTATAGCAAGA
TTATCAGCGTTATTTCAGTTATTGTGGGTTGTTATGAATGAAAATCAGTG
TCAATTTTGTCTGTGTGTGTGTTTTGTAAGAGGACTATTGTGTTTTATCC
AAGTAAATCAATGAAATGCATATGTTGCTTTTAACTTTGAAAAAAAAAAA
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