CN181692

Overview
NameCN181692
Unique NameCN181692
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8739 contig Csv1_Contig8739:174..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181692 vs. ExPASy Swiss-Prot
Match: UTP7_YEAST (U3 small nucleolar RNA-associated protein 7 OS=Saccharomyces cerevisiae GN=UTP7 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.593e-20
Identity = 45/91 (49.45%), Postives = 68/91 (74.73%), Query Frame = -3
Query:  430 HNYSRYMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQRREKEVRSLLDKLPPETIMLNPSKIGTV 702
            H  + YM H +  G ++  + F P+ED+LG+GH  G ++++VPG+GE N+D+   NPFET KQR+E+EVR+LL+KLP +TI L+P+ IG+V
Sbjct:  363 HRNTPYMSH-LFAGNKVENLGFVPFEDLLGVGHQTGITNLIVPGAGEANYDALELNPFETKKQRQEQEVRTLLNKLPADTITLDPNSIGSV 452          
BLAST of CN181692 vs. ExPASy Swiss-Prot
Match: UTP7_SCHPO (Probable U3 small nucleolar RNA-associated protein 7 OS=Schizosaccharomyces pombe GN=utp7 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20
Identity = 56/134 (41.79%), Postives = 77/134 (57.46%), Query Frame = -3
Query:  307 YMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQRREKEVRSLLDKLPPETIMLNPSKIGTV-------REAKKKEKPTKQERXXXXXXXXXXVKGFVWKNKTKGRNKPS 687
            YM H ++    +  + + PYED+LGIGH+ G+ SI+VPGSGEPN+DS+  +PF + KQR+E EVR LL+KL PE I LN   IG V       R+A+ +E+   +E+               W  K K R K S
Sbjct:  343 YMNH-LLPSSSVVDLHYCPYEDILGIGHAKGFESIIVPGSGEPNYDSYENDPFASRKQRQETEVRQLLEKLRPEMISLNADFIGNVDRAAPSLRKAEAEEEKPPEEK---------------WVPKAKARGKNS 460          
BLAST of CN181692 vs. ExPASy Swiss-Prot
Match: WDR46_MOUSE (WD repeat-containing protein 46 OS=Mus musculus GN=Wdr46 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18
Identity = 52/124 (41.94%), Postives = 75/124 (60.48%), Query Frame = -3
Query:  316 YMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQRREKEVRSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQERXXXXXXXXXXVKGFVWKNKTKGRN 687
            Y+ H +  G+  G + F P+EDVLG+GHS G++S+LVPG+ EPNFD    NP+ + KQR+E EV++LL+K+P E I LNP  +  V     +++  K+ER             F  K K KGR+
Sbjct:  440 YLTHRL-SGHVHG-LQFCPFEDVLGVGHSGGFTSMLVPGAAEPNFDGLENNPYRSRKQRQEWEVKALLEKVPAELICLNPRALAEVDVVTLEQQ--KKERIERLGYDPDAKAAFQPKAKQKGRS 559          
BLAST of CN181692 vs. ExPASy Swiss-Prot
Match: WDR46_CANFA (WD repeat-containing protein 46 OS=Canis familiaris GN=WDR46 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16
Identity = 51/124 (41.13%), Postives = 74/124 (59.68%), Query Frame = -3
Query:  316 YMGHSMVKGYQIGKVSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQRREKEVRSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQERXXXXXXXXXXVKGFVWKNKTKGRN 687
            Y+ H +  G+  G + F P+EDVLG+GHS G +S+LVPG+ EPNFD    NP+ + KQR+E EV++LL+K+P E I L+P  +  V     +++  K+ER             F  K K KGR+
Sbjct:  442 YLTHRL-SGHVHG-LHFCPFEDVLGLGHSGGITSMLVPGAAEPNFDGLENNPYRSQKQRQEWEVKALLEKVPAELICLDPRALAEVDVISLEQE--KKERIERLGYDPEAKAPFQPKPKQKGRS 561          
BLAST of CN181692 vs. ExPASy Swiss-Prot
Match: WDR46_HUMAN (WD repeat-containing protein 46 OS=Homo sapiens GN=WDR46 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16
Identity = 46/110 (41.82%), Postives = 68/110 (61.82%), Query Frame = -3
Query:  316 VSFRPYEDVLGIGHSMGWSSILVPGSGEPNFDSWVANPFETSKQRREKEVRSLLDKLPPETIMLNPSKIGTVREAKKKEKPTKQERXXXXXXXXXXVKGFVWKNKTKGRN 645
            + F P+EDVLG+GH+ G +S+LVPG+GEPNFD   +NP+ + KQR+E EV++LL+K+P E I L+P  +  V     ++   K+E+             F  K K KGR+
Sbjct:  453 LQFCPFEDVLGVGHTGGITSMLVPGAGEPNFDGLESNPYRSRKQRQEWEVKALLEKVPAELICLDPRALAEVDVISLEQ--GKKEQIERLGYDPQAKAPFQPKPKQKGRS 560          
The following BLAST results are available for this feature:
BLAST of CN181692 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
UTP7_YEAST1.593e-2049.45U3 small nucleolar RNA-associated protein 7 OS=Sac... [more]
UTP7_SCHPO6.053e-2041.79Probable U3 small nucleolar RNA-associated protein... [more]
WDR46_MOUSE7.400e-1841.94WD repeat-containing protein 46 OS=Mus musculus GN... [more]
WDR46_CANFA1.823e-1641.13WD repeat-containing protein 46 OS=Canis familiari... [more]
WDR46_HUMAN2.380e-1641.82WD repeat-containing protein 46 OS=Homo sapiens GN... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001F11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181692 ID=CN181692; Name=CN181692; organism=Citrus sinensis; type=EST; length=719bp
CCCCGGGCTGCAGGCAACGGGGAAGATAATTAAACAAGATCTCAAGAAGC
ATTTTTGGCATTAAAACAAAATTGGGGATAGAAAAGAAAATAAATACAAC
ATTTCAAAAAATGTCAACAAAACAAGAACCAACCAAAATCATGCCGTTGG
TTTCTTGCGTGCAAATCTCTGCAAAGATGCCGGTAGTTCAAGTTCCTCGG
ATAATTTTTGCTTCTTTTTAGACAATGATTGCTCTCCCTTTAATTGTTGA
TCCAGAAACGGTCTCTTGGCTTTTGCAACCAGTTCTTGCTTCTTCTTGGC
TTTCTTACTCGGTTTATTCCTACCCTTTGTTTTATTCTTCCAAACGAAGC
CCTTAACGGCCTCAACAGCAGCTTCCATTTCGGCTTCTCTCTCCTGCTTA
GTTGGTTTCTCTTTCTTCTTCGCTTCCCTCACCGTACCAATCTTAGATGG
ATTCAGCATGATTGTTTCAGGTGGGAGCTTGTCAAGAAGAGAGCGCACTT
CCTTCTCTCTCCTCTGTTTAGATGTTTCGAATGGGTTTGCCACCCAGGAA
TCGAAGTTGGGCTCACCTGATCCGGGAACAAGAATACTAGACCAACCCAT
GGAGTGCCCGATGCCTAACACATCTTCATATGGGCGAAATGAAACTTTTC
CTATTTGGTAGCCTTTCACCATAGAATGACCCATGTACCTGCTATAGTTA
TGAGATCCAGAAAAATCTC
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