CN181689

Overview
NameCN181689
Unique NameCN181689
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181689_ssr30 microsatellite CN181689_ssr30:30..41. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN181689 vs. ExPASy Swiss-Prot
Match: 14339_ARATH (14-3-3-like protein GF14 mu OS=Arabidopsis thaliana GN=GRF9 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 7.366e-29
Identity = 62/73 (84.93%), Postives = 67/73 (91.78%), Query Frame = -3
Query:  413 VFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTFDIPEDGGDEAQKMDIFAK 631
            VFYYEIMN+PERACHLAKQAFDEAISELDTL+EESYKDSTLIMQLLRDNLTLWT DI E+GGD+A K +  AK
Sbjct:  182 VFYYEIMNAPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDISEEGGDDAHKTNGSAK 254          
BLAST of CN181689 vs. ExPASy Swiss-Prot
Match: 14312_ARATH (14-3-3-like protein GF14 iota OS=Arabidopsis thaliana GN=GRF12 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.257e-28
Identity = 60/69 (86.96%), Postives = 65/69 (94.20%), Query Frame = -3
Query:  425 VFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTFDIPEDGGDEAQKMD 631
            VFYYEIMNSPERACHLAKQAFDEAI+ELDTLSEESYKDSTLIMQLLRDNLTLWT D+PEDGG++  K +
Sbjct:  185 VFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGEDNIKTE 253          
BLAST of CN181689 vs. ExPASy Swiss-Prot
Match: 1433D_SOYBN (14-3-3-like protein D OS=Glycine max GN=GF14D PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.641e-28
Identity = 63/73 (86.30%), Postives = 69/73 (94.52%), Query Frame = -3
Query:  413 VFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTFDIPEDGGDEAQKMDIFAK 631
            VFYYEI+NSPERACHLAKQAFDEAISELDTL+EESYKDSTLIMQLLRDNLTLWT DIPED G++AQK++  AK
Sbjct:  182 VFYYEILNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPED-GEDAQKVNGTAK 253          
BLAST of CN181689 vs. ExPASy Swiss-Prot
Match: 1433C_SOYBN (14-3-3-like protein C OS=Glycine max GN=GF14C PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.641e-28
Identity = 63/69 (91.30%), Postives = 65/69 (94.20%), Query Frame = -3
Query:  425 VFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTFDIPEDGGDEAQKMD 631
            VFYYEI+NSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWT DIPEDG  E QK+D
Sbjct:  182 VFYYEILNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDIPEDG--EEQKVD 248          
BLAST of CN181689 vs. ExPASy Swiss-Prot
Match: 1433B_VICFA (14-3-3-like protein B OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.236e-28
Identity = 62/73 (84.93%), Postives = 68/73 (93.15%), Query Frame = -3
Query:  413 VFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTFDIPEDGGDEAQKMDIFAK 631
            VFYYEI+NSPERACHLAKQAFDEAISELDTL+EESYKDSTLIMQLLRDNLTLWT DIPED G+++QK +  AK
Sbjct:  182 VFYYEILNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPED-GEDSQKANGTAK 253          
BLAST of CN181689 vs. ExPASy Swiss-Prot
Match: 14339_SOLLC (14-3-3 protein 9 OS=Solanum lycopersicum GN=TFT9 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 6.895e-27
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = -3
Query:  425 VFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTFDIPEDGGDEAQKMD 631
            VFYYEIMNSPERACHLAKQAFDEAISELD+L+E+SYKDSTLIMQLLRDNLTLWT D+PED  ++AQK D
Sbjct:  182 VFYYEIMNSPERACHLAKQAFDEAISELDSLNEDSYKDSTLIMQLLRDNLTLWTSDLPED-AEDAQKGD 249          
BLAST of CN181689 vs. ExPASy Swiss-Prot
Match: 14333_ORYSJ (14-3-3-like protein GF14-C OS=Oryza sativa subsp. japonica GN=GF14C PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.176e-26
Identity = 56/67 (83.58%), Postives = 63/67 (94.03%), Query Frame = -3
Query:  431 VFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTFDIPEDGGDEAQK 631
            VFYYEI+NSP++AC+LAKQAFDEAISELDTL EESYKDSTLIMQLLRDNLTLWT D+ EDGGDE ++
Sbjct:  180 VFYYEILNSPDKACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDLTEDGGDEVKE 246          
BLAST of CN181689 vs. ExPASy Swiss-Prot
Match: 14331_ORYSJ (14-3-3-like protein GF14-A OS=Oryza sativa subsp. japonica GN=GF14A PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.837e-26
Identity = 56/64 (87.50%), Postives = 60/64 (93.75%), Query Frame = -3
Query:  440 VFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTFDIPEDGGDE 631
            VFYYEI+NSP+RAC LAKQAFDEAISELDTL EESYKDSTLIMQLLRDNLTLWT D+ +DGGDE
Sbjct:  190 VFYYEILNSPDRACTLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGGDE 253          
BLAST of CN181689 vs. ExPASy Swiss-Prot
Match: 1433_MESCR (14-3-3-like protein OS=Mesembryanthemum crystallinum GN=GBF PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.623e-26
Identity = 56/67 (83.58%), Postives = 62/67 (92.54%), Query Frame = -3
Query:  431 VFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTFDIPEDGGDEAQK 631
            VFYYEI+NSP+RAC+LAKQAFDEAISELDTL EESYKDSTLIMQLLRDNLTLWT D  E+GGDE ++
Sbjct:  184 VFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDNAEEGGDEIKE 250          
BLAST of CN181689 vs. ExPASy Swiss-Prot
Match: 1433_LILLO (14-3-3-like protein OS=Lilium longiflorum PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.623e-26
Identity = 56/67 (83.58%), Postives = 62/67 (92.54%), Query Frame = -3
Query:  431 VFYYEIMNSPERACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTFDIPEDGGDEAQK 631
            VFYYEI+NSP+RAC+LAKQAFDEAISELDTL EESYKDSTLIMQLLRDNLTLWT DI E+ GDE ++
Sbjct:  185 VFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDINEEAGDEIKE 251          
The following BLAST results are available for this feature:
BLAST of CN181689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
14339_ARATH7.366e-2984.9314-3-3-like protein GF14 mu OS=Arabidopsis thalian... [more]
14312_ARATH1.257e-2886.9614-3-3-like protein GF14 iota OS=Arabidopsis thali... [more]
1433D_SOYBN1.641e-2886.3014-3-3-like protein D OS=Glycine max GN=GF14D PE=2... [more]
1433C_SOYBN1.641e-2891.3014-3-3-like protein C OS=Glycine max GN=GF14C PE=2... [more]
1433B_VICFA6.236e-2884.9314-3-3-like protein B OS=Vicia faba PE=2 SV=1[more]
14339_SOLLC6.895e-2785.5114-3-3 protein 9 OS=Solanum lycopersicum GN=TFT9 P... [more]
14333_ORYSJ1.176e-2683.5814-3-3-like protein GF14-C OS=Oryza sativa subsp. ... [more]
14331_ORYSJ5.837e-2687.5014-3-3-like protein GF14-A OS=Oryza sativa subsp. ... [more]
1433_MESCR7.623e-2683.5814-3-3-like protein OS=Mesembryanthemum crystallin... [more]
1433_LILLO7.623e-2683.5814-3-3-like protein OS=Lilium longiflorum PE=2 SV=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001F10_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181689 ID=CN181689; Name=CN181689; organism=Citrus sinensis; type=EST; length=633bp
TTTTTTTTTTTTTTTTTAAAGGAAAACAATAATTAATTAATTAAAAATGT
TGTCAAGTAAACGGCAAATAAAGTGCAAAGGGGTCTTAACACCAAGTCCA
AATTGATCAGCGGCAGCAAATATAAAAAATTCTGGGATGCAAATGATACA
AGCAGTCCAATCATGAAACTCTTGACAGGGAAGATAACACCCACATTATA
GGAACAGCACAATAACAGTACTTGAGTGTCTCTTGTAAACTAAAAAAAAC
ACCGGGAGTCATAAAGGTATTGCAGCTTCCTTGCTATCATATGCTAAAGC
TCCCAAGCTCCTGGCTGGTTCACTGAGGACAGAAAACAACAAAGATTGCA
ACTGTGCTCCAAAATAGGAAAACAAACCCACCTCTGCTTCTTCAATCTTC
ACCTTCACCATCTTTAGCAAAAATGTCCATTTTCTGGGCTTCATCACCTC
CATCCTCTGGTATGTCAAAAGTCCAAAGAGTGAGGTTGTCCCTCAATAGC
TGCATTATCAACGTGCTGTCTTTGTAAGATTCCTCACTTAATGTATCCAA
TTCTGAAATGGCTTCATCAAAGGCCTGCTTTGCAAGGTGGCATGCCCTTT
CCGGAGAGTTCATAATCTCATAGTAAAAAACTG
back to top