CN181680

Overview
NameCN181680
Unique NameCN181680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9911 contig Csv1_Contig9911:69..761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN181680 vs. ExPASy Swiss-Prot
Match: Y5848_ARATH (Uncharacterized protein At5g48480 OS=Arabidopsis thaliana GN=At5g48480 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.502e-16
Identity = 53/132 (40.15%), Postives = 71/132 (53.79%), Query Frame = 3 
Query:  159 FTGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSG--DSAAAQTVGTGCVLCLETEDXXXXXXXXXXXXXXXXXXXXXXXXXCCGERVGKVKDPYGFTWL 548
            FT  K  LLVEA K  DAV FYK+AFGA+E G S+  KRK +QELP +  ++L +AGS+F+V DVS     + A++ G+G    L T+D                           G + GKV DP+G TW+
Sbjct:   23 FTEFKQMLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELNLAGSSFVVCDVSSLPGFSTAKSEGSGVTFLLGTKDAEAAVAKAVDAGAVKVEVTEAEVE--LGFK-GKVTDPFGVTWI 151
The following BLAST results are available for this feature:
BLAST of CN181680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5848_ARATH8.502e-1640.15Uncharacterized protein At5g48480 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001F05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181680 ID=CN181680; Name=CN181680; organism=Citrus sinensis; type=EST; length=694bp
GCTCTCTTTCGTTTTCTCTCTCTTTCTCTCTCTTTCTCTCTCCTAGGGTC
AGGTTTCTTTCCTTTGTCTAGACTCCAAAACTCTCTCGCTCAATGGCTGA
TGTCCAGGAGGTTCAGAATGGAGCTGCGCCGGAGAAGGCTCCTGCCACCG
CGGCCAGCTTCACGGGGATGAAGCCGCAGTTGCTTGTGGAAGCACCGAAG
GCTACTGACGCTGTTCAGTTCTACAAGACCGCGTTTGGTGCTGTGGAGAT
CGGCCGTAGCGTGGAAACCAAACGCAAGGCTGAACAGGAGCTCCCACTCA
TCTCCTGCGCTCAACTGGAGATTGCCGGCTCCACCTTCCTTGTCTCTGAC
GTTTCCGGTGACTCTGCTGCTGCACAGACCGTGGGGACCGGATGCGTGCT
TTGCTTGGAGACCGAGGACGTGGAGGCTGCCGTCGCCAAGGCTGTGAGTG
CTGGAGCTGTTGCTGAGGGTGAGCTCGCTGAAGGCAACGGCGCGTGTTGT
GGAGAGCGCGTGGGAAAGGTCAAAGATCCTTATGGCTTCACTTGGCTCAT
TTGCTCCCCGGTCAAGAAGTGCGCTGGCGTGGAAGCTTAAGAGCCGCCTG
ATCTGATGATCTTTAGATATTGATCTACTATCACATAACTCTCTTTTGTC
GGTCGTCTTTTCTGCTGTGGGTTTATAGCTCTAGGCTTTTTTAG
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