CN181676

Overview
NameCN181676
Unique NameCN181676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181676_ssr15 microsatellite CN181676_ssr15:15..24. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2276 contig Csv1_Contig2276:1..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181676 vs. ExPASy Swiss-Prot
Match: C86A2_ARATH (Cytochrome P450 86A2 OS=Arabidopsis thaliana GN=CYP86A2 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.857e-46
Identity = 78/116 (67.24%), Postives = 94/116 (81.03%), Query Frame = 2 
Query:  326 MDTSTALMILSATVAYLLWFRFMSGSLSGPRVWPLLGSLPGLFQNSKRLHDWISDNLRACGGTYQTCTFAIPVLGRKQGLVTVTCDPKNVEHILKARFDNYPKGPTWQAAFHDLLG 673
            MD S  +++++   AY LWF+ +S  L GPRVWP+LGSLPGL +   R+HDWI++NLRACGGTYQTC  A+P L +KQGLVTVTCDPKN+EH+LK RFDNYPKGPTWQA FHD LG
Sbjct:    1 MDVSNTMLLVAVVAAYWLWFQRISRWLKGPRVWPVLGSLPGLIEQRDRMHDWITENLRACGGTYQTCICAVPFLAKKQGLVTVTCDPKNIEHMLKTRFDNYPKGPTWQAVFHDFLG 116
[Close]
BLAST of CN181676 vs. ExPASy Swiss-Prot
Match: C86A1_ARATH (Cytochrome P450 86A1 OS=Arabidopsis thaliana GN=CYP86A1 PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.524e-38
Identity = 71/107 (66.36%), Postives = 82/107 (76.64%), Query Frame = 2 
Query:  353 LSATVAYLLWFRFMSGSLSGPRVWPLLGSLPGLFQNSKRLHDWISDNLRACGGTYQTCTFAIPVLGRKQGLVTVTCDPKNVEHILKARFDNYPKGPTWQAAFHDLLG 673
            ++A   Y LWF F+S  L+GP+V P +GSLP L  N  R+HDWI+DNLRA GGTYQTCT  IP + + QG  TVTC PKNVEHILK RFDNYPKGP W+AAFHDLLG
Sbjct:   13 VAALSVYALWFYFLSRRLTGPKVLPFVGSLPYLIANRSRIHDWIADNLRATGGTYQTCTMVIPFVAKAQGFYTVTCHPKNVEHILKTRFDNYPKGPMWRAAFHDLLG 119
The following BLAST results are available for this feature:
BLAST of CN181676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
C86A2_ARATH9.857e-4667.24Cytochrome P450 86A2 OS=Arabidopsis thaliana GN=CY... [more]
C86A1_ARATH1.524e-3866.36Cytochrome P450 86A1 OS=Arabidopsis thaliana GN=CY... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001F03_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181676 ID=CN181676; Name=CN181676; organism=Citrus sinensis; type=EST; length=677bp
CCCCGGGCTGCAGGCTCTCTCTCTTTCTTCTTCACTTCCCAAGAGAACAA
GAACCAGACGCTTTTACTTCGACAATTTCTTATCTGGGTTTTAATTCTGT
TTCTTCAATTCATTTGTTCAAGTCTGGTTCGCTTCACATTTACGGATCGA
TCCCTCATCACTTCCGTTTGAAAGTTACATTTCAACATACACAACACTTT
ATATTTTATTTTATATTTTTACGTGCTAGAGAGCATTTGCTTTTGGATTT
TGAATTGTCTTTCTTCGGGGGAATTAGCGTTTAGAAGGAATTATCTGCGG
TGATAACGTGCGAGCTGCGGATATCATGGATACATCAACCGCGTTAATGA
TCTTATCTGCTACAGTTGCTTATTTACTATGGTTCAGATTCATGTCGGGG
TCCCTGAGTGGTCCACGCGTCTGGCCCCTATTGGGCAGTCTCCCGGGCCT
CTTCCAGAACTCTAAACGCTTGCACGACTGGATCTCAGACAACCTCCGCG
CGTGTGGCGGCACGTATCAGACGTGCACATTTGCTATTCCAGTTTTAGGC
CGCAAGCAGGGTCTCGTGACTGTCACGTGTGATCCCAAAAATGTTGAGCA
TATTTTGAAGGCCAGGTTTGATAACTATCCAAAGGGTCCCACGTGGCAAG
CTGCATTCCACGATTTGCTTGGCGACG
back to top