CN181675

Overview
NameCN181675
Unique NameCN181675
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181675_ssr151 microsatellite CN181675_ssr151:151..170. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181675 vs. ExPASy Swiss-Prot
Match: C86A2_ARATH (Cytochrome P450 86A2 OS=Arabidopsis thaliana GN=CYP86A2 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.134e-29
Identity = 68/111 (61.26%), Postives = 83/111 (74.77%), Query Frame = -3 
Query:  419 KYEGHDQSKFVAFNAGPRICLGKDLAYLQMKSIAAEVLLRYHLTVVPGHRVEQKMSLTLFMKYGLMMNVHPRELKPMLEKIC------------KC-GGNYQGVEMVASVA 712
            K+  HDQ +FVAFNAGPRICLGKDLAYLQMK+IAA VLLR+ LTV PGH+VEQKMSLTLFMK GL++NVH R+L+ M++ +             KC GG  +GV + A+VA
Sbjct:  440 KFVNHDQYRFVAFNAGPRICLGKDLAYLQMKTIAAAVLLRHRLTVAPGHKVEQKMSLTLFMKNGLLVNVHKRDLEVMMKSLVPKERNDVVVLNGKCNGGIGEGVAVNAAVA 550
[Close]
BLAST of CN181675 vs. ExPASy Swiss-Prot
Match: C86A1_ARATH (Cytochrome P450 86A1 OS=Arabidopsis thaliana GN=CYP86A1 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.151e-21
Identity = 52/75 (69.33%), Postives = 59/75 (78.67%), Query Frame = -3 
Query:  497 GNKYEG-HDQSKFVAFNAGPRICLGKDLAYLQMKSIAAEVLLRYHLTVVPGHRVEQKMSLTLFMKYGLMMNVHPR 718
            G ++E   D  KFVAFNAGPR CLGKDLAY QMKS+A+ VLLRY +  VPGHRVEQKMSLTLFMK GL + + PR
Sbjct:  434 GERFETPKDGYKFVAFNAGPRTCLGKDLAYNQMKSVASAVLLRYRVFPVPGHRVEQKMSLTLFMKNGLRVYLQPR 508
The following BLAST results are available for this feature:
BLAST of CN181675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
C86A2_ARATH7.134e-2961.26Cytochrome P450 86A2 OS=Arabidopsis thaliana GN=CY... [more]
C86A1_ARATH7.151e-2169.33Cytochrome P450 86A1 OS=Arabidopsis thaliana GN=CY... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001F03_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181675 ID=CN181675; Name=CN181675; organism=Citrus sinensis; type=EST; length=720bp
TTTTTTTTTTTTTTTAGAGCTTTGAAGTTTAAAATTCTTATTCAGTAAAG
CAGAACATATACATACTCAAATCTCTGCCTTTATTGCATGGCAGAGAGCA
TATGCAAGAGACCATACCATCAACACATAACTTATCTATCATTATACAAC
CACACACACACACACACACATATATAACCTTTCAATTCAGCTTTCCCCAA
TATGAATATATGAAGCAGACCCCCCCCCCCCCCCCCTCTTTTTATAATAA
TTATATGTGTATATAACTCAATCATATGATATGATTTGTAACGACAAAAC
CCTCAATCCGTCATGATCAATTTTACAAATCAATCAAGGGCGTTTTAACG
ATGAAAAAGCAGTGTCGTAACAGATCATATATATAACTAAGCATAATAGT
AGGTTATCTAATTAATTAAGCCACACTAGCTACCATTTCAACTCCCTGAT
AATTACCACCACATTTGCAGATCTTTTCTAACATTGGCTTCAGCTCCCTT
GGGTGCACATTCATCATGAGCCCGTACTTCATGAACAATGTCAGCGACAT
CTTTTGCTCCACACGGTGACCGGGAACCACCGTGAGGTGGTAGCGCAACA
ACACTTCCGCCGCGATCGACTTCATTTGTAAATAAGCCAAGTCTTTCCCT
AAACAAATTCTTGGACCAGCATTAAACGCCACAAACTTGGATTGATCATG
TCCCTCATACTTGTTTCCAT
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