CN188672

Overview
NameCN188672
Unique NameCN188672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length370
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1117 contig Csv1_Contig1117:149..518. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188672 vs. ExPASy Swiss-Prot
Match: GSTF3_ARATH (Glutathione S-transferase ERD13 OS=Arabidopsis thaliana GN=ERD13 PE=1 SV=3)

HSP 1 Score: 153.295 bits (386), Expect = 3.529e-37
Identity = 72/123 (58.54%), Postives = 96/123 (78.05%), Query Frame = 2
Query:    2 YASPKXVILCLKEKEIEFETVPVDLIKGEQRSPEYLKLQPFGELPVIQDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEEICLVEQWLEVKARNYNPAIYELTIQLLFSSKFGRPVDEKLV 370
            +AS K  ++ L EK + FETV VDL+KGEQR PEYL +QPFG++PV+ DGD+ ++ESRAIMRY AEKYRSQG +LLGKTIEE   VEQWL+V+A +Y+P +  LT+ ++F+   G P DEK++
Sbjct:   10 FASSKRAVVTLVEKGVSFETVNVDLMKGEQRQPEYLAIQPFGKIPVLVDGDYKIFESRAIMRYIAEKYRSQGPDLLGKTIEERGQVEQWLDVEATSYHPPLLALTLNIVFAPLMGFPADEKVI 132          
BLAST of CN188672 vs. ExPASy Swiss-Prot
Match: GSTF7_ARATH (Glutathione S-transferase OS=Arabidopsis thaliana GN=At3g03190 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.619e-29
Identity = 61/122 (50.00%), Postives = 84/122 (68.85%), Query Frame = 2
Query:    5 ASPKXVILCLKEKEIEFETVPVDLIKGEQRSPEYLKLQPFGELPVIQDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEEICLVEQWLEVKARNYNPAIYELTIQLLFSSKFGRPVDEKLV 370
            A+P+ V+LC  EK+IEFE + VDL K EQ+ P++L  QPFG++P I+DG   L+ESRAI RYYA KY  QGT+LLGKT+E   +V+QW+EV+   +      L + ++F  K G+P D  LV
Sbjct:   12 ANPQRVLLCFLEKDIEFEVIHVDLDKLEQKKPQHLLRQPFGQVPAIEDGYLKLFESRAIARYYATKYADQGTDLLGKTLEGRAIVDQWVEVENNYFYAVALPLVMNVVFKPKSGKPCDVALV 133          
BLAST of CN188672 vs. ExPASy Swiss-Prot
Match: GSTF3_MAIZE (Glutathione S-transferase 3 OS=Zea mays GN=GST3 PE=1 SV=4)

HSP 1 Score: 100.523 bits (249), Expect = 2.714e-21
Identity = 53/117 (45.30%), Postives = 71/117 (60.68%), Query Frame = 2
Query:   20 VILCLKEKEIEFETVPVDLIKGEQRSPEYLKLQPFGELPVIQDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEEICLVEQWLEVKARNYNPAIYELTIQLLFSSKFGRPVDEKLV 370
            V   L EK ++FE VPVDL  G  + P++L L PFG++P + DGD +L+ESRAI RY A KY S+GT+LL  T     L E WLEV++ +++P    L  QLL     G   D  +V
Sbjct:   18 VATVLNEKGLDFEIVPVDLTTGAHKQPDFLALNPFGQIPALVDGDEVLFESRAINRYIASKYASEGTDLLPATASAAKL-EVWLEVESHHFHPNASPLVFQLLVRPLLGGAPDAAVV 133          
BLAST of CN188672 vs. ExPASy Swiss-Prot
Match: GSTF_HYOMU (Glutathione S-transferase OS=Hyoscyamus muticus PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.685e-20
Identity = 41/117 (35.04%), Postives = 73/117 (62.39%), Query Frame = 2
Query:   20 VILCLKEKEIEFETVPVDLIKGEQRSPEYLKLQPFGELPVIQDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEEICLVEQWLEVKARNYNPAIYELTIQLLFSSKFGRPVDEKLV 370
            VI  LKEK+++FE VPV++  G+ +   ++ L PFG++P  +DGD  L+ESRAI +Y A  Y  +G +LL    +++ ++  W+EV+++ ++P   +LT +++     G   D+  V
Sbjct:   17 VIATLKEKDLDFELVPVNMQAGDHKKEPFITLNPFGQVPAFEDGDLKLFESRAITQYIAHTYADKGNQLLANDPKKMAIMSVWMEVESQKFDPVASKLTFEIVIKPMLGMVTDDAAV 133          
BLAST of CN188672 vs. ExPASy Swiss-Prot
Match: GSTF_SILCU (Glutathione S-transferase OS=Silene cucubalus GN=GST PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 1.489e-19
Identity = 46/119 (38.66%), Postives = 72/119 (60.50%), Query Frame = 2
Query:   20 VILCLKEKEIEFETVPVDLIKGEQRSPEYLKLQPFGELPVIQDGDFILYESRAIMRY--YAEKYRSQGTELLGKTIEEICLVEQWLEVKARNYNPAIYELTIQLLFSSKFGRPVDEKLV 370
            V++ L EK +EFE VP+D+  G  + P YL L PFG++P ++DG+  L+ESRAI +Y  Y   ++++GT L+ K   E+     W EV+A  ++P   +L  +L+F   FG   D  +V
Sbjct:   17 VLVALYEKHLEFEFVPIDMGAGGHKQPSYLALNPFGQVPALEDGEIKLFESRAITKYLAYTHDHQNEGTSLIHKEKHEMAAQLVWEEVEAHQFDPVASKLAWELVFKGIFGMQTDTTVV 135          
BLAST of CN188672 vs. ExPASy Swiss-Prot
Match: GSTF1_ORYSJ (Probable glutathione S-transferase GSTF1 OS=Oryza sativa subsp. japonica GN=GSTF1 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.489e-19
Identity = 48/119 (40.34%), Postives = 73/119 (61.34%), Query Frame = 2
Query:   20 VILCLKEKEIEFETVPVDLIKGEQRSPEYLKLQPFGELPVIQDGDFILYESRAIMRYYAEKYRSQGTELLGK-TIEEICLVEQWLEVKARNYNPAIYELTIQLLFSSKF-GRPVDEKLV 370
            V+LCL+E   E+E V VD    E +SPE+LK  PFG++P  QDGD  L+ESRAI +Y   KY+++  +LL +  + E  +V+ W EV+   YN AI  +  + + +    G P ++K+V
Sbjct:   18 VLLCLEEVGAEYEVVNVDFTVMEHKSPEHLKRNPFGQIPAFQDGDLYLFESRAIGKYILRKYKTREADLLREGNLREAAMVDVWTEVETHQYNSAISPIVYECIINPAMRGIPTNQKVV 136          
BLAST of CN188672 vs. ExPASy Swiss-Prot
Match: GSTF2_TOBAC (Glutathione S-transferase APIC OS=Nicotiana tabacum GN=APIC PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.540e-19
Identity = 44/117 (37.61%), Postives = 70/117 (59.83%), Query Frame = 2
Query:   20 VILCLKEKEIEFETVPVDLIKGEQRSPEYLKLQPFGELPVIQDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEEICLVEQWLEVKARNYNPAIYELTIQLLFSSKFGRPVDEKLV 370
            V  CL EK+++FE VPVD++ GE +   YL L PFG++P  +DGD  L+ESRAI +Y A  Y   G +L+ +  +++ ++  W+EV+ + + P   +LT +L      G   D+  V
Sbjct:   17 VAACLIEKDLDFELVPVDMVSGEHKKHPYLSLNPFGQVPAFEDGDLKLFESRAITQYIAHVYADNGYQLILQDPKKMPIMSVWMEVEGQKFEPHASKLTWELGIKPIIGMTTDDDAV 133          
BLAST of CN188672 vs. ExPASy Swiss-Prot
Match: GSTF1_WHEAT (Glutathione S-transferase 1 OS=Triticum aestivum GN=GSTA1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.333e-19
Identity = 45/106 (42.45%), Postives = 71/106 (66.98%), Query Frame = 2
Query:   20 VILCLKEKEIEFETVPVDLIKGEQRSPEYLKLQPFGELPVIQDGDFILYESRAIMRYYAEKY-RSQGTELLGKT--IEEICLVEQWLEVKARNYNPAIYELTIQLL 328
            V+L L+E   E+E VP+D + GE + P++++L PF ++P  QDGD +L+ESRAI +Y   KY  + G +LLG+   IEE+ +V+ W EV+A+ Y PAI  +  + +
Sbjct:   18 VLLFLEEVGAEYELVPMDFVAGEHKRPQHVQLNPFAKMPGFQDGDLVLFESRAIAKYILRKYGGTAGLDLLGENSGIEELAMVDVWTEVEAQQYYPAISPVVFECI 123          
BLAST of CN188672 vs. ExPASy Swiss-Prot
Match: GSTF2_ORYSJ (Probable glutathione S-transferase GSTF2 OS=Oryza sativa subsp. japonica GN=GSTF2 PE=1 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 5.660e-19
Identity = 47/117 (40.17%), Postives = 72/117 (61.54%), Query Frame = 2
Query:   23 ILCLKEKEIEFETVPVDLIKGEQRSPEYLKLQPFGELPVIQDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEEICLVEQWLEVKARNYNPAIYELTIQ-LLFSSKFGRPVDEKLV 370
            +  L+E   E+E VP+D  KGE ++P++L   PFG++P +QDGD  L+ESRAI +Y   K + +   L    ++E  +V+ WLEV++  Y PA+  +  Q L+    FG P DEK+V
Sbjct:   19 VAVLEEAGAEYEIVPLDFSKGEHKAPDHLARNPFGQVPALQDGDLFLWESRAICKYVCRKNKPE--LLKDGDLKESAMVDVWLEVESNQYTPALNPILFQCLIRPMMFGAPPDEKVV 133          
BLAST of CN188672 vs. ExPASy Swiss-Prot
Match: GSTF1_TOBAC (Glutathione S-transferase PARB OS=Nicotiana tabacum GN=PARB PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.654e-19
Identity = 45/117 (38.46%), Postives = 68/117 (58.12%), Query Frame = 2
Query:   20 VILCLKEKEIEFETVPVDLIKGEQRSPEYLKLQPFGELPVIQDGDFILYESRAIMRYYAEKYRSQGTELLGKTIEEICLVEQWLEVKARNYNPAIYELTIQLLFSSKFGRPVDEKLV 370
            V  CL EKE++FE VPVD+  GE +   YL L PFG++P  +DGD  L+ESRAI +Y A  Y   G +L+ +  +++  +  W+EV+ + + P   +LT +L      G   D+  V
Sbjct:   17 VAACLIEKELDFEFVPVDMASGEHKKHPYLSLNPFGQVPAFEDGDLKLFESRAITQYIAHVYADNGYQLILQDPKKMPSMSVWMEVEGQKFEPPATKLTWELGIKPIIGMTTDDAAV 133          
The following BLAST results are available for this feature:
BLAST of CN188672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
GSTF3_ARATH3.529e-3758.54Glutathione S-transferase ERD13 OS=Arabidopsis tha... [more]
GSTF7_ARATH4.619e-2950.00Glutathione S-transferase OS=Arabidopsis thaliana ... [more]
GSTF3_MAIZE2.714e-2145.30Glutathione S-transferase 3 OS=Zea mays GN=GST3 PE... [more]
GSTF_HYOMU6.685e-2035.04Glutathione S-transferase OS=Hyoscyamus muticus PE... [more]
GSTF_SILCU1.489e-1938.66Glutathione S-transferase OS=Silene cucubalus GN=G... [more]
GSTF1_ORYSJ1.489e-1940.34Probable glutathione S-transferase GSTF1 OS=Oryza ... [more]
GSTF2_TOBAC2.540e-1937.61Glutathione S-transferase APIC OS=Nicotiana tabacu... [more]
GSTF1_WHEAT4.333e-1942.45Glutathione S-transferase 1 OS=Triticum aestivum G... [more]
GSTF2_ORYSJ5.660e-1940.17Probable glutathione S-transferase GSTF2 OS=Oryza ... [more]
GSTF1_TOBAC9.654e-1938.46Glutathione S-transferase PARB OS=Nicotiana tabacu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006I15_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006I15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188672 ID=CN188672; Name=CN188672; organism=Citrus sinensis; type=EST; length=370bp
TTATGCTTCTCCCAAANGAGTGATTTTGTGCCTGAAAGAGAAGGAAATCG
AATTTGAAACTGTCCCCGTTGATCTCATCAAAGGAGAGCAGAGAAGTCCT
GAGTACCTCAAATTACAGCCTTTTGGAGAGCTTCCTGTCATTCAAGATGG
AGATTTTATTTTATACGAGTCGCGAGCTATCATGAGGTACTACGCTGAAA
AGTACAGGTCTCAAGGAACCGAACTTCTGGGTAAAACAATTGAAGAAATA
TGCCTGGTGGAACAGTGGCTAGAAGTAAAGGCACGCAACTACAACCCAGC
AATTTACGAGCTGACCATCCAACTTTTATTTTCCTCCAAGTTTGGACGTC
CCGTTGATGAAAAATTGGTG
back to top