CN181673

Overview
NameCN181673
Unique NameCN181673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length704
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10009 contig Csv1_Contig10009:1228..1931. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181673 vs. ExPASy Swiss-Prot
Match: KPPR_ARATH (Phosphoribulokinase, chloroplastic OS=Arabidopsis thaliana GN=At1g32060 PE=1 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 7.307e-79
Identity = 142/157 (90.45%), Postives = 149/157 (94.90%), Query Frame = -1
Query:  234 DAVIEVLPTQLIPDDNEGKVLRVRLIMKEGVKHFSPVYLFDEGSTIEWIPCGRKLTCSYPGIKFSYGPDAYFGHEVSILEMDGKFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIITSKAAAPVEAKA 704
            DAVIEVLPT LIPDDNEGKVLRVRLIMKEGVK+FSPVYLFDEGSTI WIPCGRKLTCSYPGIKF+Y PD+YF HEVS+LEMDG+FDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQ+I +KA A  EAKA
Sbjct:  239 DAVIEVLPTTLIPDDNEGKVLRVRLIMKEGVKYFSPVYLFDEGSTISWIPCGRKLTCSYPGIKFNYEPDSYFDHEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQLIANKATARAEAKA 395          
BLAST of CN181673 vs. ExPASy Swiss-Prot
Match: KPPR_WHEAT (Phosphoribulokinase, chloroplastic OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 9.543e-79
Identity = 140/155 (90.32%), Postives = 146/155 (94.19%), Query Frame = -1
Query:  240 DAVIEVLPTQLIPDDNEGKVLRVRLIMKEGVKHFSPVYLFDEGSTIEWIPCGRKLTCSYPGIKFSYGPDAYFGHEVSILEMDGKFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIITSKAAAPVEA 704
            DAVIEVLPTQLIPDDNEGKVLRV+LIMKEG+K F+PVYLFDEGSTI WIPCGRKLTCSYPGIKFSYGPD YFG EVS+LEMDG+FDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQII  +A  P EA
Sbjct:  247 DAVIEVLPTQLIPDDNEGKVLRVKLIMKEGIKFFNPVYLFDEGSTINWIPCGRKLTCSYPGIKFSYGPDTYFGQEVSVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIIAERAGVPAEA 401          
BLAST of CN181673 vs. ExPASy Swiss-Prot
Match: KPPR_MESCR (Phosphoribulokinase, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 7.562e-76
Identity = 136/155 (87.74%), Postives = 145/155 (93.55%), Query Frame = -1
Query:  240 DAVIEVLPTQLIPDDNEGKVLRVRLIMKEGVKHFSPVYLFDEGSTIEWIPCGRKLTCSYPGIKFSYGPDAYFGHEVSILEMDGKFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIITSKAAAPVEA 704
            DAVIEVLPTQLIP DNEGKVLRVRLI KEGV++FSPVYLFDEGS+I WIPCGRKLTCSYPGIKF YGPD YFG+EV++LEMDG+FDRLDELIYVESHLSNLSTKFYGEVTQQMLKH DFPGSNNGTGLFQTIVGLKIRDL+EQ+I SK AAP  A
Sbjct:  240 DAVIEVLPTQLIPGDNEGKVLRVRLIQKEGVQYFSPVYLFDEGSSITWIPCGRKLTCSYPGIKFFYGPDTYFGNEVTVLEMDGQFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHQDFPGSNNGTGLFQTIVGLKIRDLFEQLIASKTAAPAAA 394          
BLAST of CN181673 vs. ExPASy Swiss-Prot
Match: KPPR_SPIOL (Phosphoribulokinase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 8.651e-72
Identity = 125/155 (80.65%), Postives = 142/155 (91.61%), Query Frame = -1
Query:  240 DAVIEVLPTQLIPDDNEGKVLRVRLIMKEGVKHFSPVYLFDEGSTIEWIPCGRKLTCSYPGIKFSYGPDAYFGHEVSILEMDGKFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIITSKAAAPVEA 704
            D VIEVLPT+LIPDD+EGKVLRVR+I KEGVK F+PVYLFDEGSTI WIPCGRKLTCSYPGIKFSYGPD ++G+EV+++EMDG FDRLDELIYVESHLSNLSTKFYGEVTQQMLKH +FPGSNNGTG FQTI+GLKIRDL+EQ++ S++ A   A
Sbjct:  245 DVVIEVLPTELIPDDDEGKVLRVRMIQKEGVKFFNPVYLFDEGSTISWIPCGRKLTCSYPGIKFSYGPDTFYGNEVTVVEMDGMFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHQNFPGSNNGTGFFQTIIGLKIRDLFEQLVASRSTATATA 399          
BLAST of CN181673 vs. ExPASy Swiss-Prot
Match: KPPR_CHLRE (Phosphoribulokinase, chloroplastic OS=Chlamydomonas reinhardtii GN=PRKA PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.341e-63
Identity = 114/153 (74.51%), Postives = 134/153 (87.58%), Query Frame = -1
Query:  246 DAVIEVLPTQLIPDDNEGKVLRVRLIMKEGVKHFSPVYLFDEGSTIEWIPCGRKLTCSYPGIKFSYGPDAYFGHEVSILEMDGKFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIITSKAAAPV 704
            D +I+VLPTQL+PDD +G+ LRVRLIMKEG K F PVYLFDEGSTI WIPCGRKLTCS+PGIK  YGPD ++G EVS+LEMDG+FD+L+ELIYVESHLSN S KFYGE+TQQMLK++ FPGSNNGTGLFQTIVGLK+R++YE+I+  K   PV
Sbjct:  225 DMIIQVLPTQLVPDD-KGQYLRVRLIMKEGSKMFDPVYLFDEGSTISWIPCGRKLTCSFPGIKMFYGPDTWYGQEVSVLEMDGQFDKLEELIYVESHLSNTSAKFYGEITQQMLKNSGFPGSNNGTGLFQTIVGLKVREVYERIV-KKDVVPV 375          
BLAST of CN181673 vs. ExPASy Swiss-Prot
Match: KPPR_SYNY3 (Phosphoribulokinase OS=Synechocystis sp. (strain PCC 6803) GN=prk PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.303e-55
Identity = 98/152 (64.47%), Postives = 128/152 (84.21%), Query Frame = -1
Query:  249 DAVIEVLPTQLIPDDNEGKVLRVRLIMKEGVKHFSPVYLFDEGSTIEWIPCGRKLTCSYPGIKFSYGPDAYFGHEVSILEMDGKFDRLDELIYVESHLSNLSTKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIITSKAAAP 704
            D VI+VLPT+LI +D E K+LRVRL+ KEGVK F P YLFDEGSTI+W PCGRKLTC+YPGIK  YGPD + G+EVS+LE+DG+F+ L+E++YVE+HLS   TK+YGE+T+ +LKH D+PG++NGTGLFQ +VGLK+R +YEQ +T++A  P
Sbjct:  180 DVVIQVLPTRLI-EDKESKLLRVRLVQKEGVKFFEPAYLFDEGSTIDWRPCGRKLTCTYPGIKMYYGPDNFMGNEVSLLEVDGRFENLEEMVYVENHLSKTGTKYYGEMTELLLKHKDYPGTDNGTGLFQVLVGLKMRKVYEQ-LTAEAKVP 329          
The following BLAST results are available for this feature:
BLAST of CN181673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
KPPR_ARATH7.307e-7990.45Phosphoribulokinase, chloroplastic OS=Arabidopsis ... [more]
KPPR_WHEAT9.543e-7990.32Phosphoribulokinase, chloroplastic OS=Triticum aes... [more]
KPPR_MESCR7.562e-7687.74Phosphoribulokinase, chloroplastic OS=Mesembryanth... [more]
KPPR_SPIOL8.651e-7280.65Phosphoribulokinase, chloroplastic OS=Spinacia ole... [more]
KPPR_CHLRE7.341e-6374.51Phosphoribulokinase, chloroplastic OS=Chlamydomona... [more]
KPPR_SYNY33.303e-5564.47Phosphoribulokinase OS=Synechocystis sp. (strain P... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001F02_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181673 ID=CN181673; Name=CN181673; organism=Citrus sinensis; type=EST; length=704bp
TTTTTTTTTTTTTTTTTGATTGAATTTCTTCTCTGCTTTTGCATCTCTAT
ATTGAGTTATTAACAAAGTGTTCATAGATTACAACATGAAATAAATACAT
ACATAGGAGTATCTTACGAGGAAAATGCTGGCCTAGCACTCAACTGAAAC
AAGAAAAGGGACTCGGAAAAGAATAGATGGATTTTTGGCAACTTATCTGT
GTTGCCTTGTTTAATATTACAAGGCAGTGTTTAAGCTTTCGCTTCTACCG
GAGCCGCAGCCTTGCTGGTGATGATTTGTTCGTAGAGATCCCTAATCTTT
AATCCAACTATAGTTTGGAAGAGACCGGTTCCGTTGTTGCTGCCAGGGAA
ATCGGCATGCTTCAACATTTGCTGGGTGACTTCTCCATAGAACTTGGTTG
ATAAGTTGCTTAGATGGCTTTCGACATAAATTAGCTCATCTAACCTGTCA
AATTTCCCATCCATTTCCAAAATCGAGACCTCATGGCCAAAGTAAGCGTC
AGGGCCATAAGAGAATTTGATGCCGGGGTAAGAACATGTAAGCTTCCTTC
CGCAAGGTATCCATTCGATTGTTGATCCTTCATCAAACAGATAAACCGGG
CTGAAGTGCTTCACTCCTTCTTTCATGATCAACCTAACTCTCAAAACCTT
TCCTTCATTATCGTCCGGAATCAGTTGGGTTGGTAACACTTCAATCACTG
CATC
back to top