CN181672

Overview
NameCN181672
Unique NameCN181672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2275 contig Csv1_Contig2275:12..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181672 vs. ExPASy Swiss-Prot
Match: TRNH1_ARATH (Tropinone reductase homolog At1g07440 OS=Arabidopsis thaliana GN=At1g07440 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.719e-29
Identity = 57/91 (62.64%), Postives = 71/91 (78.02%), Query Frame = 3
Query:   93 REQRWSLKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMEAVCSEFDGKLNIL 365
            + QRWSLK  T LVTGGT+GIGHAIVEE   FGA++HTC+RNE ELNE + +W+ KG +V+GS CD  +R ER+KLM+ V S F GKL+IL
Sbjct:    6 QSQRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKLDIL 96          

HSP 2 Score: 73.1738 bits (178), Expect = 1.275e-12
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 3
Query:  399 LIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSVNGF 539
            +I R P+ R GEP EVSS+VAFLC+PAASY+TGQ  C+DGG +VNGF
Sbjct:  214 VISRKPLGRFGEPEEVSSLVAFLCMPAASYITGQTICVDGGLTVNGF 260          
BLAST of CN181672 vs. ExPASy Swiss-Prot
Match: TRN1_DATST (Tropinone reductase 1 OS=Datura stramonium GN=TR1 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.300e-28
Identity = 61/95 (64.21%), Postives = 72/95 (75.79%), Query Frame = 3
Query:   81 MSESREQRWSLKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMEAVCSEFDGKLNIL 365
            M+ + E RWSLKG TALVTGG++GIG+AIVEEL   GA V+TCSRNE EL+E ++ W+ KGL V GS CDL  R ER KLM+ V   FDGKLNIL
Sbjct:    9 MNCNNEGRWSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLNIL 103          

HSP 2 Score: 69.707 bits (169), Expect = 1.410e-11
Identity = 30/59 (50.85%), Postives = 41/59 (69.49%), Query Frame = 3
Query:  360 ILKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSVNG 536
            I K+P   E     I +TP+ R G+P EVS+++AFLC PAASY+TGQ+   DGG++ NG
Sbjct:  213 IKKNPHQKEEIDNFIVKTPMGRAGKPQEVSALIAFLCFPAASYITGQIIWADGGFTANG 271          
BLAST of CN181672 vs. ExPASy Swiss-Prot
Match: TRNH_DATST (Tropinone reductase homolog OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.075e-27
Identity = 60/105 (57.14%), Postives = 81/105 (77.14%), Query Frame = 3
Query:   96 EQRWSLKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMEAVCSEFDGKLNILKDPRVMEHASRLIPR 410
            ++RWSL+GMTALVTGGTRGIG+AIVEEL  FGA V+TCSR++ +L+E +++W+ KG KVSG  CD+   ++RQ LME+V S F+GKLNIL     + +A   IP+
Sbjct:   10 DRRWSLRGMTALVTGGTRGIGYAIVEELANFGAEVYTCSRSQNDLDECLEKWRRKGFKVSGPVCDVSSISQRQTLMESVTSSFNGKLNIL-----INNAGTTIPK 109          

HSP 2 Score: 78.1814 bits (191), Expect = 3.964e-14
Identity = 38/74 (51.35%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  318 LMEAVCSEFDGKLNILKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSVNGF 539
            ++EA C     K NI            LI R P+ R GEP+EVSS+V +LCLP ASY+TGQ+ C+DGGY+VNGF
Sbjct:  204 IIEAACQVPSQKKNI----------ESLIGRAPMKRAGEPSEVSSLVTYLCLPTASYITGQIICVDGGYTVNGF 267          
BLAST of CN181672 vs. ExPASy Swiss-Prot
Match: TRN2_DATST (Tropinone reductase 2 OS=Datura stramonium GN=TR2 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.027e-26
Identity = 55/88 (62.50%), Postives = 69/88 (78.41%), Query Frame = 3
Query:  102 RWSLKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMEAVCSEFDGKLNIL 365
            RW+L+G TALVTGG+RGIG+ IVEEL + GA V+TCSRN+ ELN+ + +W+SKG KV  S CDL  R+ERQ+LM  V + F GKLNIL
Sbjct:    4 RWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGKLNIL 91          
BLAST of CN181672 vs. ExPASy Swiss-Prot
Match: TRN2_HYONI (Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.897e-24
Identity = 52/88 (59.09%), Postives = 67/88 (76.14%), Query Frame = 3
Query:  102 RWSLKGMTALVTGGTRGIGHAIVEELTAFGAIVHTCSRNETELNERIQEWKSKGLKVSGSACDLKIRAERQKLMEAVCSEFDGKLNIL 365
            RW+L+G TALVTGG+RGIG+ IVEEL   GA V+TCSRN+ EL+E + +W+SKG  V  S CDL  R+ER++ M+ V + F GKLNIL
Sbjct:    4 RWNLEGCTALVTGGSRGIGYGIVEELANLGASVYTCSRNQKELDECLTQWRSKGFNVEASVCDLSSRSEREEFMKTVSNHFHGKLNIL 91          

HSP 2 Score: 70.8626 bits (172), Expect = 6.329e-12
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = 3
Query:  363 LKDPRVMEHASRLIPRTPIPRPGEPNEVSSVVAFLCLPAASYVTGQVFCIDGGYSVNG 536
            ++DP   E+  +LI R  + R GEP E+++VVAFLC PAASYVTGQ+  +DGG+  NG
Sbjct:  201 IQDPEQKENLDKLIDRCALRRMGEPKELAAVVAFLCFPAASYVTGQIIYVDGGFMANG 258          
The following BLAST results are available for this feature:
BLAST of CN181672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TRNH1_ARATH9.719e-2962.64Tropinone reductase homolog At1g07440 OS=Arabidops... [more]
TRN1_DATST6.300e-2864.21Tropinone reductase 1 OS=Datura stramonium GN=TR1 ... [more]
TRNH_DATST1.075e-2757.14Tropinone reductase homolog OS=Datura stramonium P... [more]
TRN2_DATST2.027e-2662.50Tropinone reductase 2 OS=Datura stramonium GN=TR2 ... [more]
TRN2_HYONI1.897e-2459.09Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 P... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001F01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181672 ID=CN181672; Name=CN181672; organism=Citrus sinensis; type=EST; length=637bp
AGATTCTCCTATTAAATACAACAAATTGCTATTGTTCTCATAAGAGAAGA
TTAATTGCAGTTTCTGCTACCCGGAAAAACATGTCAGAATCCAGAGAACA
AAGGTGGTCTCTAAAGGGTATGACCGCGCTTGTTACAGGTGGAACCAGAG
GCATCGGACATGCAATTGTAGAAGAACTAACGGCATTTGGAGCAATAGTG
CATACATGTTCACGTAATGAAACAGAGCTCAATGAAAGAATTCAAGAATG
GAAGAGTAAGGGGCTTAAAGTAAGCGGCTCGGCATGTGACCTGAAAATTA
GAGCTGAGCGTCAAAAGTTGATGGAGGCTGTATGTTCTGAATTTGATGGC
AAGCTCAACATCCTTAAGGATCCAAGGGTCATGGAACACGCTAGTCGTTT
GATACCCCGCACTCCTATACCTCGTCCAGGAGAACCTAATGAGGTTTCGT
CAGTGGTAGCATTCCTATGTTTGCCAGCCGCTTCATACGTCACCGGACAG
GTTTTTTGTATTGATGGAGGATACTCCGTGAATGGATTTTAGCCCTACGG
ACATGAAATGATCTTTTAAATTTTCGGGCTGTTCCTCCAAAGTCAAGTTA
GGTCTTCATGTTATGGATGCCATTCTAATAAGCTCTC
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