CN181668

Overview
NameCN181668
Unique NameCN181668
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length595
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10990 contig Csv1_Contig10990:44..638. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181668 vs. ExPASy Swiss-Prot
Match: KTAP2_HUMAN (Keratinocyte-associated protein 2 OS=Homo sapiens GN=KRTCAP2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.578e-11
Identity = 40/119 (33.61%), Postives = 63/119 (52.94%), Query Frame = -3
Query:  210 GFSKAMAGSGSSMLYSFLMFIVILSLQQMYRGKLASTELFTILGGFISSLIFLVSLTFIGNFQET---SGMKTG-WGXXXXXXXXXXXXASTVHRVCITTCFLFSAGLLYEVNKLSGMM 554
            G    + G+G+S+  S L+ +++ +  QMY  +LASTE  TI GG + S +F+ SLT   N +      G +   +             +  +HRVC+TTCF+FS   LY +NK+S  +
Sbjct:   23 GRGMMVVGTGTSLALSSLLSLLLFAGMQMYSRQLASTEWLTIQGGLLGSGLFVFSLTAFNNLENLVFGKGFQAKIFPEILLCLLLALFASGLIHRVCVTTCFIFSMVGLYYINKISSTL 141          
BLAST of CN181668 vs. ExPASy Swiss-Prot
Match: KTAP2_BOVIN (Keratinocyte-associated protein 2 OS=Bos taurus GN=KRTCAP2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.674e-11
Identity = 39/114 (34.21%), Postives = 62/114 (54.39%), Query Frame = -3
Query:  210 MAGSGSSMLYSFLMFIVILSLQQMYRGKLASTELFTILGGFISSLIFLVSLTFIGNFQET---SGMKTG-WGXXXXXXXXXXXXASTVHRVCITTCFLFSAGLLYEVNKLSGMM 539
            + G+G+S+  S L+ +++ +  QMY  +LASTE  TI GG + S +F+ SLT   N +      G +   +             +  +HRVC+TTCF+FS   LY +NK+S  +
Sbjct:    2 VVGTGTSLALSSLLSLLLFAGMQMYSRQLASTEWLTIQGGLLGSGLFVFSLTAFNNLENLVFGKGFQAKIFPEILLCLLLALFASGLIHRVCVTTCFIFSMVGLYYINKISSTL 115          
BLAST of CN181668 vs. ExPASy Swiss-Prot
Match: KTAP2_CANFA (Keratinocyte-associated protein 2 OS=Canis familiaris GN=KRTCAP2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.104e-11
Identity = 39/112 (34.82%), Postives = 61/112 (54.46%), Query Frame = -3
Query:  210 GSGSSMLYSFLMFIVILSLQQMYRGKLASTELFTILGGFISSLIFLVSLTFIGNFQET---SGMKTG-WGXXXXXXXXXXXXASTVHRVCITTCFLFSAGLLYEVNKLSGMM 533
            G+G+S+  S L+ +++ +  QMY  +LASTE  TI GG + S +F+ SLT   N +      G +   +             +  +HRVC+TTCF+FS   LY +NK+S  +
Sbjct:    4 GTGTSLALSSLLSLLLFAGMQMYSRQLASTEWLTIQGGLLGSGLFVFSLTAFNNLENLVFGKGFQAKIFPEILLCLLLALFASGLIHRVCVTTCFIFSMVGLYYINKISSTL 115          
The following BLAST results are available for this feature:
BLAST of CN181668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
KTAP2_HUMAN3.578e-1133.61Keratinocyte-associated protein 2 OS=Homo sapiens ... [more]
KTAP2_BOVIN4.674e-1134.21Keratinocyte-associated protein 2 OS=Bos taurus GN... [more]
KTAP2_CANFA6.104e-1134.82Keratinocyte-associated protein 2 OS=Canis familia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001E23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181668 ID=CN181668; Name=CN181668; organism=Citrus sinensis; type=EST; length=595bp
GAGGAGGCATTGTAAATATGTTGGACACAAAAATGTATCAAACAGACAAT
CACTGTCAGACAAACTATAAAGTATCAGTAATTTTTCGTTTTTGATAGTT
ATCCGCTACACTAAAAAATGATTATGGATACAAAGATAAGATGATAAAAC
CTCTTGTAATTTATCCGGCATCATCAATGCCTTTTTGTTTTGGATTCACT
TCTGGCAATCATCATCCCTGAAAGCTTGTTGACCTCGTACAGCAGTCCAG
CTGAGAACAAGAAACATGTTGTAATGCAGACTCGATGAACAGTGCTAGCA
GCAATCAGAGCAATCAGTTCCGCCACTATAACAGCACCCCATCCAGTCTT
CATACCACTTGTTTCCTGAAAATTTCCAATGAACGTCAGTGACACAAGGA
ATATGAGTGAGCTGATGAAGCCTCCAAGAATCGTAAACAACTCCGTTGAT
GCCAGCTTCCCTCTATACATTTGTTGAAGAGAGAGGATGACAATAAACAT
AAGAAATGAATAGAGCATCGAACTCCCAGACCCAGCCATGGCCTTTGAAA
AACCCTAGCCCCTCCGATCCGATCTCGTTAGTTGATACGTCCTAG
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