CN181667

Overview
NameCN181667
Unique NameCN181667
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10990 contig Csv1_Contig10990:45..623. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181667 vs. ExPASy Swiss-Prot
Match: KTAP2_HUMAN (Keratinocyte-associated protein 2 OS=Homo sapiens GN=KRTCAP2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.402e-11
Identity = 39/114 (34.21%), Postives = 61/114 (53.51%), Query Frame = 2 
Query:   41 MAGSGSSMLYSFLMFIVILSLQQMYRGKLASTELFTILGGFISSLIFLVSLTFIGNFQET---SGMKTG-WGXXXXXXXXXXXXXSTVHRVCITTCFLFSAGLLYEVNKLSGMM 370
            + G+G+S+  S L+ +++ +  QMY  +LASTE  TI GG + S +F+ SLT   N +      G +   +                +HRVC+TTCF+FS   LY +NK+S  +
Sbjct:   28 VVGTGTSLALSSLLSLLLFAGMQMYSRQLASTEWLTIQGGLLGSGLFVFSLTAFNNLENLVFGKGFQAKIFPEILLCLLLALFASGLIHRVCVTTCFIFSMVGLYYINKISSTL 141
[Close]
BLAST of CN181667 vs. ExPASy Swiss-Prot
Match: KTAP2_BOVIN (Keratinocyte-associated protein 2 OS=Bos taurus GN=KRTCAP2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.402e-11
Identity = 39/114 (34.21%), Postives = 61/114 (53.51%), Query Frame = 2 
Query:   41 MAGSGSSMLYSFLMFIVILSLQQMYRGKLASTELFTILGGFISSLIFLVSLTFIGNFQET---SGMKTG-WGXXXXXXXXXXXXXSTVHRVCITTCFLFSAGLLYEVNKLSGMM 370
            + G+G+S+  S L+ +++ +  QMY  +LASTE  TI GG + S +F+ SLT   N +      G +   +                +HRVC+TTCF+FS   LY +NK+S  +
Sbjct:    2 VVGTGTSLALSSLLSLLLFAGMQMYSRQLASTEWLTIQGGLLGSGLFVFSLTAFNNLENLVFGKGFQAKIFPEILLCLLLALFASGLIHRVCVTTCFIFSMVGLYYINKISSTL 115
[Close]
BLAST of CN181667 vs. ExPASy Swiss-Prot
Match: KTAP2_CANFA (Keratinocyte-associated protein 2 OS=Canis familiaris GN=KRTCAP2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.749e-11
Identity = 39/112 (34.82%), Postives = 60/112 (53.57%), Query Frame = 2 
Query:   47 GSGSSMLYSFLMFIVILSLQQMYRGKLASTELFTILGGFISSLIFLVSLTFIGNFQET---SGMKTG-WGXXXXXXXXXXXXXSTVHRVCITTCFLFSAGLLYEVNKLSGMM 370
            G+G+S+  S L+ +++ +  QMY  +LASTE  TI GG + S +F+ SLT   N +      G +   +                +HRVC+TTCF+FS   LY +NK+S  +
Sbjct:    4 GTGTSLALSSLLSLLLFAGMQMYSRQLASTEWLTIQGGLLGSGLFVFSLTAFNNLENLVFGKGFQAKIFPEILLCLLLALFASGLIHRVCVTTCFIFSMVGLYYINKISSTL 115
The following BLAST results are available for this feature:
BLAST of CN181667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
KTAP2_HUMAN4.402e-1134.21Keratinocyte-associated protein 2 OS=Homo sapiens ... [more]
KTAP2_BOVIN4.402e-1134.21Keratinocyte-associated protein 2 OS=Bos taurus GN... [more]
KTAP2_CANFA5.749e-1134.82Keratinocyte-associated protein 2 OS=Canis familia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001E23_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181667 ID=CN181667; Name=CN181667; organism=Citrus sinensis; type=EST; length=578bp
TAACGAGATCGGATCGGAGGGGCTAGGGTTTTTCAAGGCCATGGCTGGGT
CTGGGAGTTCGATGCTCTATTCATTTCTTATGTTTATTGTCATCCTCTCT
CTTCAACAAATGTATAGAGGGAAGCTGGCATCAACGGAGTTGTTTACGAT
TCTTGGAGGCTTCATCAGCTCACTCATATTCCTTGTGTCACTGACGTTCA
TTGGAAATTTTCAGGAAACAAGTGGTATGAAGACTGGATGGGGTGCTGTT
ATAGTGGCGGAACTGATTGCTCTGATTGCTGCTAGCACTGTTCATCGAGT
CTGCATTACAACATGTTTCTTGTTCTCAGCTGGACTGCTGTACGAGGTCA
ACAAGCTTTCAGGGATGATGATTGCCAGAAGTGAATCCAAAACAAAAAGG
CATTGATGATGCCGGATAAATTACAAGAGGTTTTATCATCTTATCTTTGT
ATCCATAATCATTTTTTAGTGTAGCGGATAACTATCAAAAACGAAAAATT
ACTGATACTTTATAGTTTGTCTGACAGTGATTGTCTGTTTGATACATTTT
TGTGTCCAACATATTTACAATGCCTCCT
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