CN181666

Overview
NameCN181666
Unique NameCN181666
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181666 vs. ExPASy Swiss-Prot
Match: PUB6_ARATH (U-box domain-containing protein 6 OS=Arabidopsis thaliana GN=PUB6 PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.228e-41
Identity = 94/147 (63.95%), Postives = 111/147 (75.51%), Query Frame = -1
Query:  186 GKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRDHPPVDIGQQDDDSSEKLKPTYTPTPDHAPES--KPLCKSISRRK-MGKAFSFLWKSKSYSV 617
            GKEEM +T G++S LATVLDTG+ +EQEQAVSCL +LC G+E C QMVLQEGVIP+LVSISVNGS RGRDK+Q+LLMLFREQR RD P  +  +++        P   P P  APES  KPL KSISRRK M + FSFLWK KS+S+
Sbjct:  626 GKEEMITTQGMISTLATVLDTGDTVEQEQAVSCLVILCTGSESCIQMVLQEGVIPSLVSISVNGSPRGRDKSQKLLMLFREQRHRDQPSPN--KEEAPRKTVSAPMAIPAPVSAPESEVKPLTKSISRRKTMTRPFSFLWK-KSHSI 769          
BLAST of CN181666 vs. ExPASy Swiss-Prot
Match: PUB45_ARATH (U-box domain-containing protein 45 OS=Arabidopsis thaliana GN=PUB45 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.961e-39
Identity = 87/146 (59.59%), Postives = 107/146 (73.29%), Query Frame = -1
Query:  180 GKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQRDHPPVDIGQQDDDSSEKLKPTYTPTPDHAPESKPLCKSISRRKMGKAFSFLWKSKSYSVSQ 617
            GK+EM S P LVS L T+LDTGE  EQEQAVS L +LCN +E C +MVLQEGVIP+LVSISVNG+ RGR++AQ+LL LFRE RQRD   +   Q  + +S   +  ++       E+KP CKS SR+KMG+AFSFLWKSKS+SV Q
Sbjct:  624 GKDEMVSAPSLVSNLCTILDTGEPNEQEQAVSLLLILCNHSEICSEMVLQEGVIPSLVSISVNGTQRGRERAQKLLTLFRELRQRDQTHLTEPQHTEVTSP--EDGFSVASAAVTETKPQCKSASRKKMGRAFSFLWKSKSFSVYQ 767          
BLAST of CN181666 vs. ExPASy Swiss-Prot
Match: PUB7_ARATH (U-box domain-containing protein 7 OS=Arabidopsis thaliana GN=PUB7 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.528e-35
Identity = 86/157 (54.78%), Postives = 105/157 (66.88%), Query Frame = -1
Query:  180 GKEEMNSTPGLVSGLATVLDTGELIEQEQAVSCLFLLCNGNEKCCQMVLQEGVIPALVSISVNGSTRGRDKAQRLLMLFREQRQ--------RDHPPVDIGQQDDDSSEKLKPTYTPTPDHAPESKP--LCKSISRRK-MGKAFSFLWKSKSYSVSQ 617
            GK+E  S+ G++S LATVLD G+  EQEQAVSCL +LCNG E C QMVLQEGVIP+LVSISVNG+ RGR+K+Q+LLMLFRE+RQ        RD PP     +   S+       TP      + +P  L KS+SRRK M + FSF WK KSYSV +
Sbjct:  627 GKDEAVSSQGMISSLATVLDMGDTTEQEQAVSCLLILCNGRESCIQMVLQEGVIPSLVSISVNGTPRGREKSQKLLMLFREERQQRDQPSSNRDEPPQKEPARKSLSAPLSVHGSTPASASVQDYEPRVLSKSMSRRKSMARPFSFFWK-KSYSVRE 782          
The following BLAST results are available for this feature:
BLAST of CN181666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PUB6_ARATH1.228e-4163.95U-box domain-containing protein 6 OS=Arabidopsis t... [more]
PUB45_ARATH1.961e-3959.59U-box domain-containing protein 45 OS=Arabidopsis ... [more]
PUB7_ARATH6.528e-3554.78U-box domain-containing protein 7 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001E22_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001E22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181666 ID=CN181666; Name=CN181666; organism=Citrus sinensis; type=EST; length=617bp
TTTTTTTTTTTTTTTTTGAAGATAAGGAAACTAGACCAAAATCCATTGAT
TACAAGGGCTGTACATCTCTTCTCTACGAGTAACAAGAAATAAATTATGC
CCGCGGTAGCAGGACAGAAAAGGAAATAGAAAAGAAGATACAGGGAAAAT
TTACAAAGCTAAGGGCGCCTATTTTAATACTGGGAAACTGAATAGCTCTT
GCTCTTCCACAAGAAGCTAAAAGCTTTTCCCATCTTTCTTCTTGATATAG
ATTTACATAGAGGCTTTGATTCTGGAGCATGGTCGGGAGTGGGAGTATAT
GTTGGTTTCAGCTTCTCACTACTATCATCATCTTGTTGTCCGATATCAAC
AGGTGGATGATCCCGTTGCCTCTGCTCCCGAAATAACATCAAAAGTCTCT
GTGCCTTGTCTCTCCCTCTTGTACTCCCATTCACTGAAATCGACACAAGT
GCAGGAATGACCCCTTCTTGTAGAACCATTTGACAACATTTCTCATTCCC
ATTACACAAAAGGAAAAGACATGAAACAGCTTGCTCCTGCTCAATGAGTT
CACCAGTGTCCAACACCGTTGCCAACCCAGAAACTAAGCCTGGGGTTGAA
TTCATTTCTTCTTTTCC
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