CN181664

Overview
NameCN181664
Unique NameCN181664
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2274 contig Csv1_Contig2274:1..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181664 vs. ExPASy Swiss-Prot
Match: HDG5_ARATH (Homeobox-leucine zipper protein HDG5 OS=Arabidopsis thaliana GN=HDG5 PE=2 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 2.963e-67
Identity = 134/241 (55.60%), Postives = 169/241 (70.12%), Query Frame = 3
Query:   18 ASPYHETGLILMEEEKSLAMELAASSMNELVKMCHAAEPIWIR--SNENGKEVL--NLEEHARMFPWPLNLKQHSSEFRTEATRDTAVVIMNSITLVDAFLDANKWMELFPSIVARAKTVQXXXXXXXXXXXXLHLMYAELQVLSPLVPTREAYFLRYCQQNVEEGTWAVVDFPMDSFHDNNIQPSFPL---YRRRPSGCIIQDMPNGYSRVTWVEHAEIEEKPVHQIFSHYVYSAMAFGA 719
            A+  +   ++L +EEK +AME A S + EL KMC   EP+WI+  S++ G E+L  N EE+ R+FPWP+  + +  +F  EA++  AVVIMNSITLVDAFL+A+KW E+F SIVARAKTVQ            L      L VLSPLVPTREAYFLRY +QN E G WA+VDFP+DSFHD  +QP   +   Y+R+PSGCIIQDMPNGYS+V WVEH E++EK VH+ F+ YV S MAFGA
Sbjct:  303 ANNNNNNNMLLADEEKVIAMEFAVSCVQELTKMCDTEEPLWIKKKSDKIGGEILCLNEEEYMRLFPWPMENQNNKGDFLREASKANAVVIMNSITLVDAFLNADKWSEMFCSIVARAKTVQIISSGVSGASGSL------LLVLSPLVPTREAYFLRYVEQNAETGNWAIVDFPIDSFHD-QMQPMNTITHEYKRKPSGCIIQDMPNGYSQVKWVEHVEVDEKHVHETFAEYVKSGMAFGA 536          
BLAST of CN181664 vs. ExPASy Swiss-Prot
Match: ROC3_ORYSJ (Homeobox-leucine zipper protein ROC3 OS=Oryza sativa subsp. japonica GN=ROC3 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.066e-64
Identity = 126/232 (54.31%), Postives = 158/232 (68.10%), Query Frame = 3
Query:   48 LMEEEKSLAMELAASSMNELVKMCHAAEPIWIRSNENGKEVLNLEEHARMFPWPLNLKQHS---SEFRTEATRDTAVVIMNSITLVDAFLDANKWMELFPSIVARAKTVQXXXXXXXXXXXX---LHLMYAELQVLSPLVPTREAYFLRYCQQNVEEGTWAVVDFPMDSFHDNNIQPSFPLYRRRPSGCIIQDMPNGYSRVTWVEHAEI--EEKPVHQIFSHYVYSAMAFGA 719
            + E++K L ++LAA++ ++L +MC A EP+W+R  + G EV+ +EEHARMF WP++  +     +  R E TRD AVVIMNSI LVDAFLDANKWMELFPSIV +A+T+Q               L LM AE+Q LSPLV  RE  F RYC  N +EG+WA+VDFP + F +  +Q S    RRRPSGCIIQDMPNGYSRV WVEH E+  EEKP+  +F  YV S  AFGA
Sbjct:  339 VQEQDKQLVVDLAATAADQLARMCRAGEPLWVR--QRGAEVMAVEEHARMFSWPVDGAKQGDGGAVARAEGTRDNAVVIMNSINLVDAFLDANKWMELFPSIVCKARTIQIINHGAASGHLGSGTLLLMQAEVQFLSPLVAAREVVFFRYCVHNADEGSWAIVDFPAEGFEEGLLQASVVRCRRRPSGCIIQDMPNGYSRVVWVEHMEMVGEEKPLQPVFRDYVASGAAFGA 568          
BLAST of CN181664 vs. ExPASy Swiss-Prot
Match: ROC3_ORYSI (Homeobox-leucine zipper protein ROC3 OS=Oryza sativa subsp. indica GN=ROC3 PE=3 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 3.066e-64
Identity = 126/232 (54.31%), Postives = 158/232 (68.10%), Query Frame = 3
Query:   48 LMEEEKSLAMELAASSMNELVKMCHAAEPIWIRSNENGKEVLNLEEHARMFPWPLNLKQHS---SEFRTEATRDTAVVIMNSITLVDAFLDANKWMELFPSIVARAKTVQXXXXXXXXXXXX---LHLMYAELQVLSPLVPTREAYFLRYCQQNVEEGTWAVVDFPMDSFHDNNIQPSFPLYRRRPSGCIIQDMPNGYSRVTWVEHAEI--EEKPVHQIFSHYVYSAMAFGA 719
            + E++K L ++LAA++ ++L +MC A EP+W+R  + G EV+ +EEHARMF WP++  +     +  R E TRD AVVIMNSI LVDAFLDANKWMELFPSIV +A+T+Q               L LM AE+Q LSPLV  RE  F RYC  N +EG+WA+VDFP + F +  +Q S    RRRPSGCIIQDMPNGYSRV WVEH E+  EEKP+  +F  YV S  AFGA
Sbjct:  339 VQEQDKQLVVDLAATAADQLARMCRAGEPLWVR--QRGAEVMAVEEHARMFSWPVDGAKQGDGGAVARAEGTRDNAVVIMNSINLVDAFLDANKWMELFPSIVCKARTIQIINHGAASGHLGSGTLLLMQAEVQFLSPLVAAREVVFFRYCVHNADEGSWAIVDFPAEGFEEGLLQASVVRCRRRPSGCIIQDMPNGYSRVVWVEHMEMVGEEKPLQPVFRDYVASGAAFGA 568          
BLAST of CN181664 vs. ExPASy Swiss-Prot
Match: HDG4_ARATH (Homeobox-leucine zipper protein HDG4 OS=Arabidopsis thaliana GN=HDG4 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.601e-58
Identity = 121/237 (51.05%), Postives = 154/237 (64.98%), Query Frame = 3
Query:   15 EASPYHETGLILMEEEKSLAMELAASSMNELVKMCHAAEPIWIRSNENGKEV-LNLEEHARMFPWPLNLKQHSSEFRTEATRDTAVVIMNSITLVDAFLDANKWMELFPSIVARAKTVQXXXXXXXXXXXXLHLMYAELQVLSPLVPTREAYFLRYCQQNVEEGTWAVVDFPMDSFHDNNIQPSFPLYRRRPSGCIIQDMPNGYSRVTWVEHAEIEEKPVH-QIFSHYVYSAMAFGA 719
            E +  +   +++ EEEK++ MELA S   EL KMC   EP+W +   + + V LN EE+ +MF WPL        FR EA+R  AV+++N ITLV AFLDA+KW E+F  IV+ AKT Q            L LM+AELQV+SPLVPTREAYFLRY +QN EEG W VVDFP+D     +   +   YRR+PSGCIIQ M NGYS+VTWVEH E+EEK V  ++   +V S +AFGA
Sbjct:  217 ETNKNNNDNMLIAEEEKAIDMELAVSCARELAKMCDINEPLWNKKRLDNESVCLNEEEYKKMFLWPL--MNDDDRFRREASRANAVIMLNCITLVKAFLDADKWSEMFFPIVSSAKTAQIISSGASGPSGTLLLMFAELQVVSPLVPTREAYFLRYVEQNAEEGKWMVVDFPIDRIKPASATTT-DQYRRKPSGCIIQAMRNGYSQVTWVEHVEVEEKHVQDEVVREFVESGVAFGA 450          
BLAST of CN181664 vs. ExPASy Swiss-Prot
Match: HDG1_ARATH (Homeobox-leucine zipper protein HDG1 OS=Arabidopsis thaliana GN=HDG1 PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.251e-49
Identity = 97/221 (43.89%), Postives = 145/221 (65.61%), Query Frame = 3
Query:   57 EEKSLAMELAASSMNELVKMCHAAEPIWIRSNENGKEVLNLEEHARMFPWPLNLKQHSSEFRTEATRDTAVVIMNSITLVDAFLDANKWMELFPSIVARAKTVQXXXXXXXXXXXXLHLMYAELQVLSPLVPTREAYFLRYCQQNVEEGTWAVVDFPMDSFHDNNIQPSFPLYRRRPSGCIIQDMPNGYSRVTWVEHAEIEEKPVHQIFSHYVYSAMAFGA 719
            +++S  ++LA ++M+ELVKM    EP+W+RS+++G EVLN EE+   F   +  KQ    F +EA+++   VI+NS+ LV+  +D+ +W E+FPS+V+R  T +            LHLM+AELQ+LSPLVP R+  FLR+C+Q+  EG WAVVD  +DS  +     S    RR PSGC++QDM NGYS+VTW+EH E +E  +H+++   +   +AFGA
Sbjct:  312 DQRSRYLDLALAAMDELVKMAQTREPLWVRSSDSGFEVLNQEEYDTSFSRCVGPKQDG--FVSEASKEAGTVIINSLALVETLMDSERWAEMFPSMVSRTSTTEIISSGMGGRNGALHLMHAELQLLSPLVPVRQVSFLRFCKQHA-EGVWAVVDVSIDSIREG----SSSSCRRLPSGCLVQDMANGYSKVTWIEHTEYDENHIHRLYRPLLRCGLAFGA 525          
BLAST of CN181664 vs. ExPASy Swiss-Prot
Match: PDF2_ARATH (Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 OS=Arabidopsis thaliana GN=PDF2 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.786e-49
Identity = 104/225 (46.22%), Postives = 149/225 (66.22%), Query Frame = 3
Query:   54 EEEKSLAMELAASSMNELVKMCHAAEPIWIRSNENGKEVLNLEEHARMFPWPLNLKQHSSEFRTEATRDTAVVIMNSITLVDAFLDANKWMELFPSIVARAKTVQXXXXXXXXXXXX-LHLMYAELQVLSPLVPTREAYFLRYCQQNVEEGTWAVVDFPMDSFHDNNIQPSFPLYR--RRPSGCIIQDMPNGYSRVTWVEHAEIEEKPVHQIFSHYVYSAMAFGA 719
            E +K + +ELA ++M ELV+M    +P+W+ S +N  E+LN EE+ R FP  +  K      R+EA+R +AVVIMN I LV+  +D N+W  +F  IV+RA T++             L +M AE QV SPLVPTRE YF+RYC+Q+  +G+WAVVD  +DS     ++PS P+ R  RRPSGC+IQ++PNGYS+VTW+EH E++++ VH ++   V S +AFGA
Sbjct:  245 ETDKPIIVELAVAAMEELVRMAQTGDPLWL-STDNSVEILNEEEYFRTFPRGIGPKPLG--LRSEASRQSAVVIMNHINLVEILMDVNQWSCVFSGIVSRALTLEVLSTGVAGNYNGALQVMTAEFQVPSPLVPTRENYFVRYCKQH-SDGSWAVVDVSLDS-----LRPSTPILRTRRRPSGCLIQELPNGYSKVTWIEHMEVDDRSVHNMYKPLVQSGLAFGA 460          
BLAST of CN181664 vs. ExPASy Swiss-Prot
Match: ROC7_ORYSJ (Homeobox-leucine zipper protein ROC7 OS=Oryza sativa subsp. japonica GN=ROC7 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.752e-49
Identity = 110/225 (48.89%), Postives = 144/225 (64.00%), Query Frame = 3
Query:   60 EKSLAMELAASSMNELVKMCHAAEPIWIRSNENGKEVLNLEEHARMFPWPLNLKQHSSEFRTEATRDTAVVIMNSITLVDAFLDANKWMELFPSIVARAKTVQXXXXXXXXXXXX-LHLMYAELQVLSPLVPTREAYFLRYCQQNVEEGTWAVVDFPMDSFH---DNNIQPSFPL-YRRRPSGCIIQDMPNGYSRVTWVEHAEIEEKPVHQIFSHYVYSAMAFGA 719
            +K L +ELA ++M ELV+M    EP+W  +   G E L  EE+AR FP  L  K  S E R+EA+R+TAVVIMN ++LV+  +D  +W  LF SIV+RA T++             L LM AE Q+ SPLVPTRE  FLRYC+Q+  +GTWAVVD  +D          QP+    +RRRPSGC+IQ+MPNGYS+VTWVEH E +++ VH ++   V S MAFGA
Sbjct:  259 DKPLVIELAVAAMEELVRMAQLGEPLWAPAL--GGEALGEEEYARTFPRGLGPK--SPELRSEASRETAVVIMNHVSLVEMLMDVGQWTALFSSIVSRAATLEVLSTGVAGNHNGALQLMSAEFQMPSPLVPTRETQFLRYCKQH-PDGTWAVVDVSLDGLRAGAGGGCQPAAARGHRRRPSGCLIQEMPNGYSKVTWVEHVEADDQMVHNLYKPVVNSGMAFGA 478          
BLAST of CN181664 vs. ExPASy Swiss-Prot
Match: ROC7_ORYSI (Homeobox-leucine zipper protein ROC7 OS=Oryza sativa subsp. indica GN=ROC7 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.752e-49
Identity = 110/225 (48.89%), Postives = 144/225 (64.00%), Query Frame = 3
Query:   60 EKSLAMELAASSMNELVKMCHAAEPIWIRSNENGKEVLNLEEHARMFPWPLNLKQHSSEFRTEATRDTAVVIMNSITLVDAFLDANKWMELFPSIVARAKTVQXXXXXXXXXXXX-LHLMYAELQVLSPLVPTREAYFLRYCQQNVEEGTWAVVDFPMDSFH---DNNIQPSFPL-YRRRPSGCIIQDMPNGYSRVTWVEHAEIEEKPVHQIFSHYVYSAMAFGA 719
            +K L +ELA ++M ELV+M    EP+W  +   G E L  EE+AR FP  L  K  S E R+EA+R+TAVVIMN ++LV+  +D  +W  LF SIV+RA T++             L LM AE Q+ SPLVPTRE  FLRYC+Q+  +GTWAVVD  +D          QP+    +RRRPSGC+IQ+MPNGYS+VTWVEH E +++ VH ++   V S MAFGA
Sbjct:  259 DKPLVIELAVAAMEELVRMAQLGEPLWAPAL--GGEALGEEEYARTFPRGLGPK--SPELRSEASRETAVVIMNHVSLVEMLMDVGQWTALFSSIVSRAATLEVLSTGVAGNHNGALQLMSAEFQMPSPLVPTRETQFLRYCKQH-PDGTWAVVDVSLDGLRAGAGGGCQPAAARGHRRRPSGCLIQEMPNGYSKVTWVEHVEADDQMVHNLYKPVVNSGMAFGA 478          
BLAST of CN181664 vs. ExPASy Swiss-Prot
Match: ROC1_ORYSJ (Homeobox-leucine zipper protein ROC1 OS=Oryza sativa subsp. japonica GN=ROC1 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.207e-49
Identity = 105/228 (46.05%), Postives = 147/228 (64.47%), Query Frame = 3
Query:   39 GLILMEEEKSLAMELAASSMNELVKMCHAAEPIWIRSNENGKEVLNLEEHARMFPWPLNLKQHSSEFRTEATRDTAVVIMNSITLVDAFLDANKWMELFPSIVARAKTVQXXXXXXXXXXXX-LHLMYAELQVLSPLVPTREAYFLRYCQQNVEEGTWAVVDFPMDSFHDNNIQPSFPLYRRRPSGCIIQDMPNGYSRVTWVEHAEIEEKPVHQIFSHYVYSAMAFGA 719
            G+  ++ +K + +ELA ++M+ELV+M    EP+W  S+E    +L+ EE+ARMFP  L  KQ+    ++EA+R  AVVIM    LV+  +D N++  +F SIV+RA T +             L +M  E QV SPLVPTRE+YF+RYC+ N  +GTWAVVD  +DS   + +Q      RRRPSGC+IQ+MPNGYS+VTWVEH E+++  VH I+   V S +AFGA
Sbjct:  286 GVHPLDADKPMIVELAVAAMDELVQMAQLDEPLWSSSSEPAAALLDEEEYARMFPRGLGPKQYG--LKSEASRHGAVVIMTHSNLVEILMDVNQFATVFSSIVSRASTHEVLSTGVAGNYNGALQVMSMEFQVPSPLVPTRESYFVRYCKNN-SDGTWAVVDVSLDSLRPSPVQKC----RRRPSGCLIQEMPNGYSKVTWVEHVEVDDSSVHNIYKPLVNSGLAFGA 506          
BLAST of CN181664 vs. ExPASy Swiss-Prot
Match: ROC2_ORYSJ (Homeobox-leucine zipper protein ROC2 OS=Oryza sativa subsp. japonica GN=ROC2 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.059e-48
Identity = 106/228 (46.49%), Postives = 147/228 (64.47%), Query Frame = 3
Query:   54 EEEKSLAMELAASSMNELVKMCHAAEPIW-----IRSNENGKEVLNLEEHARMFPWPLNLKQHSSEFRTEATRDTAVVIMNSITLVDAFLDANKWMELFPSIVARAKTVQXXXXXXXXXXXX-LHLMYAELQVLSPLVPTREAYFLRYCQQNVEEGTWAVVDFPMDSFHDNNIQPSFPLYRRRPSGCIIQDMPNGYSRVTWVEHAEIEEKPVHQIFSHYVYSAMAFGA 719
            E +K + +ELA ++M ELV+M    EP+W     + +     E L+ EE+ARMFP  L  KQ+    R+EA+RD+AVVIM    LV+  +DAN++  +F +IV+RA T++             L +M  E QV SPLVPTRE+YF+RYC+QN + GTWAVVD  +DS   + +       RRRPSGC+IQ+MPNGYS+VTWVEH E++++ VH I+   V S +AFGA
Sbjct:  287 EVDKPMIVELAVAAMEELVRMAQLDEPLWSVAPPLDATAAAMETLSEEEYARMFPRGLGPKQYG--LRSEASRDSAVVIMTHANLVEILMDANQYAAVFSNIVSRAITLEVLSTGVAGNYNGALQVMSVEFQVPSPLVPTRESYFVRYCKQNAD-GTWAVVDVSLDSLRPSPVLKC----RRRPSGCLIQEMPNGYSKVTWVEHVEVDDRSVHNIYKLLVNSGLAFGA 507          
The following BLAST results are available for this feature:
BLAST of CN181664 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
HDG5_ARATH2.963e-6755.60Homeobox-leucine zipper protein HDG5 OS=Arabidopsi... [more]
ROC3_ORYSJ3.066e-6454.31Homeobox-leucine zipper protein ROC3 OS=Oryza sati... [more]
ROC3_ORYSI3.066e-6454.31Homeobox-leucine zipper protein ROC3 OS=Oryza sati... [more]
HDG4_ARATH5.601e-5851.05Homeobox-leucine zipper protein HDG4 OS=Arabidopsi... [more]
HDG1_ARATH1.251e-4943.89Homeobox-leucine zipper protein HDG1 OS=Arabidopsi... [more]
PDF2_ARATH2.786e-4946.22Homeobox-leucine zipper protein PROTODERMAL FACTOR... [more]
ROC7_ORYSJ4.752e-4948.89Homeobox-leucine zipper protein ROC7 OS=Oryza sati... [more]
ROC7_ORYSI4.752e-4948.89Homeobox-leucine zipper protein ROC7 OS=Oryza sati... [more]
ROC1_ORYSJ6.207e-4946.05Homeobox-leucine zipper protein ROC1 OS=Oryza sati... [more]
ROC2_ORYSJ1.059e-4846.49Homeobox-leucine zipper protein ROC2 OS=Oryza sati... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001E21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001E21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181664 ID=CN181664; Name=CN181664; organism=Citrus sinensis; type=EST; length=721bp
ATGCCATGTTCCTAGAAGCTTCTCCTTATCATGAAACTGGCCTGATATTG
ATGGAAGAGGAGAAATCTCTCGCGATGGAGCTAGCCGCCTCTTCCATGAA
TGAGCTTGTTAAGATGTGCCATGCAGCTGAACCTATTTGGATTCGAAGCA
ATGAAAACGGAAAGGAAGTACTTAATCTTGAGGAGCATGCGAGAATGTTC
CCTTGGCCTTTGAATCTCAAGCAACACTCAAGTGAGTTTAGGACTGAAGC
CACTCGAGACACTGCCGTTGTTATCATGAATAGCATCACTCTCGTTGATG
CCTTCCTTGATGCTAATAAATGGATGGAGCTGTTTCCTTCAATTGTTGCT
AGAGCAAAAACTGTTCAAGTTATTGCATCGGGAGTTTCCAGTGCAAGTGG
TTCCCTTCACCTGATGTATGCAGAATTGCAAGTTCTTTCTCCTTTAGTTC
CAACTCGAGAGGCCTATTTTCTCCGCTATTGTCAACAAAATGTGGAGGAA
GGAACTTGGGCCGTCGTTGATTTCCCGATGGACAGCTTCCATGACAACAA
CATTCAGCCTTCCTTTCCTCTGTACCGTAGGCGTCCCTCCGGCTGCATCA
TTCAAGACATGCCCAATGGTTACTCAAGGGTTACTTGGGTTGAGCACGCA
GAGATCGAAGAGAAGCCTGTGCATCAGATATTTAGTCACTATGTTTACAG
TGCAATGGCATTTGGAGCATC
back to top