CN181663

Overview
NameCN181663
Unique NameCN181663
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2273 contig Csv1_Contig2273:1..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181663 vs. ExPASy Swiss-Prot
Match: TCPE_ARATH (T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=At1g24510 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.892e-19
Identity = 44/53 (83.02%), Postives = 53/53 (100.00%), Query Frame = 2
Query:  557 MALAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGM 715
            MALAFDEFGRPFI+LR+Q++K+RLRG+DAQKAN++AGKAVARILR+SLGPKGM
Sbjct:    1 MALAFDEFGRPFIILREQDQKTRLRGIDAQKANIAAGKAVARILRSSLGPKGM 53          
BLAST of CN181663 vs. ExPASy Swiss-Prot
Match: TCPE1_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.295e-18
Identity = 43/53 (81.13%), Postives = 51/53 (96.23%), Query Frame = 2
Query:  557 MALAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGM 715
            MALAFDE+GRPFI+LR+QE+KSRL+GLDA KAN++A KA+ARILRTSLGPKGM
Sbjct:    1 MALAFDEYGRPFIILREQEKKSRLQGLDAHKANIAAAKAIARILRTSLGPKGM 53          
BLAST of CN181663 vs. ExPASy Swiss-Prot
Match: TCPE2_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.252e-17
Identity = 43/53 (81.13%), Postives = 51/53 (96.23%), Query Frame = 2
Query:  557 MALAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGM 715
            MAL FDE+ RPFI+LR+QE+KSRL+GLDAQKAN++AGK+VARILRTSLGPKGM
Sbjct:    1 MALDFDEYWRPFIILREQEKKSRLQGLDAQKANIAAGKSVARILRTSLGPKGM 53          
BLAST of CN181663 vs. ExPASy Swiss-Prot
Match: TCPE_RAT (T-complex protein 1 subunit epsilon OS=Rattus norvegicus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 30/51 (58.82%), Postives = 42/51 (82.35%), Query Frame = 2
Query:  563 LAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGM 715
            LAFDE+GRPF++++ Q+ KSRL GL+A K+++ A KAVA  +RTSLGP G+
Sbjct:    7 LAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGL 57          
BLAST of CN181663 vs. ExPASy Swiss-Prot
Match: TCPE_PONAB (T-complex protein 1 subunit epsilon OS=Pongo abelii GN=CCT5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 30/51 (58.82%), Postives = 42/51 (82.35%), Query Frame = 2
Query:  563 LAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGM 715
            LAFDE+GRPF++++ Q+ KSRL GL+A K+++ A KAVA  +RTSLGP G+
Sbjct:    7 LAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGL 57          
BLAST of CN181663 vs. ExPASy Swiss-Prot
Match: TCPE_MOUSE (T-complex protein 1 subunit epsilon OS=Mus musculus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 30/51 (58.82%), Postives = 42/51 (82.35%), Query Frame = 2
Query:  563 LAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGM 715
            LAFDE+GRPF++++ Q+ KSRL GL+A K+++ A KAVA  +RTSLGP G+
Sbjct:    7 LAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGL 57          
BLAST of CN181663 vs. ExPASy Swiss-Prot
Match: TCPE_MACFA (T-complex protein 1 subunit epsilon OS=Macaca fascicularis GN=CCT5 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 30/51 (58.82%), Postives = 42/51 (82.35%), Query Frame = 2
Query:  563 LAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGM 715
            LAFDE+GRPF++++ Q+ KSRL GL+A K+++ A KAVA  +RTSLGP G+
Sbjct:    7 LAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGL 57          
BLAST of CN181663 vs. ExPASy Swiss-Prot
Match: TCPE_HUMAN (T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.287e-11
Identity = 30/51 (58.82%), Postives = 42/51 (82.35%), Query Frame = 2
Query:  563 LAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGM 715
            LAFDE+GRPF++++ Q+ KSRL GL+A K+++ A KAVA  +RTSLGP G+
Sbjct:    7 LAFDEYGRPFLIIKDQDRKSRLMGLEALKSHIMAAKAVANTMRTSLGPNGL 57          
BLAST of CN181663 vs. ExPASy Swiss-Prot
Match: TCPE_DICDI (T-complex protein 1 subunit epsilon OS=Dictyostelium discoideum GN=cct5 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 27/53 (50.94%), Postives = 43/53 (81.13%), Query Frame = 2
Query:  557 MALAFDEFGRPFILLRQQEEKSRLRGLDAQKANVSAGKAVARILRTSLGPKGM 715
            M+L FDE+G PFI++R Q+ K RLRG++A ++++ A K ++ I+++SLGPKGM
Sbjct:    1 MSLVFDEYGNPFIVIRDQQAKERLRGIEAHRSHILAAKTISNIMKSSLGPKGM 53          
The following BLAST results are available for this feature:
BLAST of CN181663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
TCPE_ARATH3.892e-1983.02T-complex protein 1 subunit epsilon OS=Arabidopsis... [more]
TCPE1_AVESA3.295e-1881.13T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPE2_AVESA1.252e-1781.13T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPE_RAT2.287e-1158.82T-complex protein 1 subunit epsilon OS=Rattus norv... [more]
TCPE_PONAB2.287e-1158.82T-complex protein 1 subunit epsilon OS=Pongo abeli... [more]
TCPE_MOUSE2.287e-1158.82T-complex protein 1 subunit epsilon OS=Mus musculu... [more]
TCPE_MACFA2.287e-1158.82T-complex protein 1 subunit epsilon OS=Macaca fasc... [more]
TCPE_HUMAN2.287e-1158.82T-complex protein 1 subunit epsilon OS=Homo sapien... [more]
TCPE_DICDI6.655e-1150.94T-complex protein 1 subunit epsilon OS=Dictyosteli... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001E20_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001E20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181663 ID=CN181663; Name=CN181663; organism=Citrus sinensis; type=EST; length=715bp
TTTGGATGATATGAACTTGTTATTCAAGAACATTCACCACCCATCACAGC
AAAGAGCAAAGATGTAGTCGAAGGAGTGTCATTTATTCAAGCTTACTCGA
TCTGTCACTCTCACTTCAATTCGTCGCTCAACTTCTCGAGGGCATCTTCA
ATCTATCACTCTCAGCTTCAGTTCGTCACTCACAGCTTCAAATTTTCACT
CTCGTGAATCACCTCTCTCGCTGTACTCTCTCTTATGTCTCCCAACAATT
TCGGCTGGGCCTATTCAACATTCTCGAGATAAGAATGTCACTTGTAAATC
TGGCCGACTGCGATTCTCCGTTGGTCCTTTCACTATTCCCTCCCCAATTT
CTGAGGATGCAAAACAACTTATTCTTTATCTTTTTTATGACAAATTGAAT
AACATGTATGAACTGATATATACAAACTGCTTTTACGACAAGTGTATTTG
TAAAGTGTGCTCAAATAAAAAGCACTGAAAGTTCTACACTCTTCTTGTGA
AGAGAAGTGGAAGGGGAAGAGGAAGCAGCAGCTGTGAGAATCAAGGATAG
GAGAAAATGGCGTTAGCGTTCGACGAGTTCGGTCGACCGTTCATATTATT
AAGGCAGCAAGAAGAGAAGTCCAGATTGCGTGGACTCGATGCTCAGAAAG
CCAACGTTTCGGCCGGCAAAGCGGTGGCTCGGATCCTCCGGACCTCCCTC
GGACCCAAAGGCATG
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