CN181662 | Citrus Genome Database

Overview


Name	CN181662
Unique Name	CN181662
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	552

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig4023	contig	Csv1_Contig4023:84..634.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CN181662 vs. ExPASy Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.343e-70
Identity = 95/119 (79.83%), Postives = 106/119 (89.08%), Query Frame = 2

Query:  194 GFTLEELKAAGIPKKLAPTIGVFFYHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 550
            GFTLEELKAAGIPKKLAPTIG+   HRRKNRSLEGLQ+NVQRLKTYK KLV+FPRRARK KAGDS PEELA ATQVQG Y+PI  EKPT+ELVK+T +MKSFKA+DK+R+ER N+RH G
Sbjct:   73 GFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAG 191

HSP 2 Score: 92.8189 bits (229), Expect = 1.343e-70
Identity = 40/61 (65.57%), Postives = 44/61 (72.13%), Query Frame = 1

Query:    1 NGHFKKHWQNYLSTWYNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLR 183
            NGHFKKHWQNY+ TW+NQP                IFPRPT+GPLRPVVHGQTLKYNMK+R
Sbjct:    9 NGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVR 69

[Close]

BLAST of CN181662 vs. ExPASy Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 7.209e-69
Identity = 94/119 (78.99%), Postives = 102/119 (85.71%), Query Frame = 2

Query:  194 GFTLEELKAAGIPKKLAPTIGVFFYHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 550
            GFTLEELKAAGIPKKLAPTIG+   HRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQVQG YMPI  EK  +ELVK+T +MKS  AYDK+R+ER N+RH G
Sbjct:   73 GFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKQAMELVKLTSEMKSVNAYDKIRLERTNKRHAG 191

HSP 2 Score: 93.9745 bits (232), Expect = 7.209e-69
Identity = 41/61 (67.21%), Postives = 44/61 (72.13%), Query Frame = 1

Query:    1 NGHFKKHWQNYLSTWYNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLR 183
            NGHFKKHWQNY+ TW+NQP                IFPRPTAGPLRPVVHGQTLKYNMK+R
Sbjct:    9 NGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVR 69

[Close]

BLAST of CN181662 vs. ExPASy Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 3.546e-68
Identity = 93/119 (78.15%), Postives = 102/119 (85.71%), Query Frame = 2

Query:  194 GFTLEELKAAGIPKKLAPTIGVFFYHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 550
            GFTLEELK+AGIPKKLAPTIG+   HRRKNRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA ATQVQG YMPI  EK   ELVK+T +MKS KA+DK+R+ER N+RH G
Sbjct:   73 GFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKHATELVKLTTEMKSVKAFDKIRLERTNKRHAG 191

HSP 2 Score: 93.9745 bits (232), Expect = 3.546e-68
Identity = 41/61 (67.21%), Postives = 44/61 (72.13%), Query Frame = 1

Query:    1 NGHFKKHWQNYLSTWYNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLR 183
            NGHFKKHWQNY+ TW+NQP                IFPRPTAGPLRPVVHGQTLKYNMK+R
Sbjct:    9 NGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVR 69

[Close]

BLAST of CN181662 vs. ExPASy Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.867e-67
Identity = 94/119 (78.99%), Postives = 103/119 (86.55%), Query Frame = 2

Query:  194 GFTLEELKAAGIPKKLAPTIGVFFYHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 550
            GFTLEELK AGIPKKLAPTIG+   HRRKNRSLEGLQSNVQRLKTYKAKLVVFPRR+R+ KAGDS PEELA ATQVQG YMPIA  K  +ELVK+T D+K+FKAYDK+R+ER N RH G
Sbjct:   73 GFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIRLERTNARHAG 191

HSP 2 Score: 87.4261 bits (215), Expect = 3.867e-67
Identity = 37/61 (60.66%), Postives = 43/61 (70.49%), Query Frame = 1

Query:    1 NGHFKKHWQNYLSTWYNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLR 183
            + HF+KHWQNY+ TW+NQP                IFPRPT+GPLRPVVHGQTLKYNMK+R
Sbjct:    9 SSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVR 69

[Close]

BLAST of CN181662 vs. ExPASy Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 4.153e-60
Identity = 87/119 (73.11%), Postives = 98/119 (82.35%), Query Frame = 2

Query:  194 GFTLEELKAAGIPKKLAPTIGVFFYHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 550
            GFTLEELKAAGIPKKLAPTIG+   H RKNRSLEG Q+NVQRLKTYKAKLV+FPR AR  K GDSA +ELA ATQVQ  +MPI  E PT+ELVK+T DMK F AYDK+R+E +N+RH G
Sbjct:   73 GFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAG 191

HSP 2 Score: 78.5666 bits (192), Expect = 4.153e-60
Identity = 35/61 (57.38%), Postives = 40/61 (65.57%), Query Frame = 1

Query:    1 NGHFKKHWQNYLSTWYNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLR 183
            NGHFKK W+NY+ T +NQP                IFPRPTAGP+RPVVH QTL YNMK+R
Sbjct:    9 NGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVR 69

[Close]

BLAST of CN181662 vs. ExPASy Swiss-Prot
Match: RL13_TOBAC (60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.388e-54
Identity = 76/119 (63.87%), Postives = 88/119 (73.95%), Query Frame = 2

Query:  194 GFTLEELKAAGIPKKLAPTIGVFFYHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 550
            GF+LEELKAAGIPKKLAPTIG+   HRR+NRSLEGLQ+NVQRL+  + +LVVFPRRA + +     P    TATQV G YMPI  EK  + L KV + MKSF AY KLR+ER NERH G
Sbjct:   69 GFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRRASRSRLVILPPRNCLTATQVHGAYMPIEREKHQLILSKVLKKMKSFNAYAKLRVERTNERHIG 187

HSP 2 Score: 87.4261 bits (215), Expect = 2.388e-54
Identity = 38/61 (62.30%), Postives = 42/61 (68.85%), Query Frame = 1

Query:    1 NGHFKKHWQNYLSTWYNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLR 183
            NGHFKKHWQNY+ TW+NQP                I PRPTAG LRP+VHGQTLKYNMK+R
Sbjct:    5 NGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKISPRPTAGTLRPIVHGQTLKYNMKVR 65

[Close]

BLAST of CN181662 vs. ExPASy Swiss-Prot
Match: RL13_CHLSW (60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80) GN=RPL13 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 5.017e-45
Identity = 69/116 (59.48%), Postives = 86/116 (74.14%), Query Frame = 2

Query:  194 GFTLEELKAAGIPKKLAPTIGVFFYHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNER 541
            GFTLEELK AGIP K APT+G+   HRRKNRSLE LQ+NVQRLKTY+A LV+FPR  +K KA +++  + + A+Q +G  +P+   KP +ELVK+T DMK    Y KLRIERVN R
Sbjct:   74 GFTLEELKEAGIPAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRASLVIFPRNMKKPKAFEASAADCSAASQAKGELLPLKGTKPALELVKITADMKEGSQYGKLRIERVNAR 189

HSP 2 Score: 63.1586 bits (152), Expect = 5.017e-45
Identity = 28/61 (45.90%), Postives = 34/61 (55.74%), Query Frame = 1

Query:    1 NGHFKKHWQNYLSTWYNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLR 183
            NGHF K WQ ++ TW+NQP                 FPRP AG L+P+V  QT+KYN K R
Sbjct:   10 NGHFHKKWQFHVKTWFNQPARKQRRRNARAEKAKATFPRPVAGSLKPIVRCQTVKYNTKQR 70

[Close]

BLAST of CN181662 vs. ExPASy Swiss-Prot
Match: RL13_DANRE (60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 3.382e-40
Identity = 67/119 (56.30%), Postives = 83/119 (69.75%), Query Frame = 2

Query:  194 GFTLEELKAAGIPKKLAPTIGVFFYHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 550
            GFTLEELKAAGI KK+A TIG+    RR+NRS E LQ+NVQRLK Y+ KL++FPR+A K K GDS  EEL  ATQ+ GP MPI       +   +++D K+FKA+  LR+ R N R FG
Sbjct:   75 GFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAKPKKGDSTEEELKMATQLTGPVMPIKKVHKKEKARVISEDEKNFKAFASLRMARANARLFG 193

HSP 2 Score: 57.7658 bits (138), Expect = 3.382e-40
Identity = 26/61 (42.62%), Postives = 33/61 (54.10%), Query Frame = 1

Query:    1 NGHFKKHWQNYLSTWYNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLR 183
            N HF K WQ  + TW+NQP                I PRP +GPLRPVV   T++Y+ K+R
Sbjct:   11 NPHFHKDWQKRVRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVRCPTIRYHTKVR 71

[Close]

BLAST of CN181662 vs. ExPASy Swiss-Prot
Match: RL13_ICTPU (60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 3.284e-37
Identity = 61/119 (51.26%), Postives = 78/119 (65.55%), Query Frame = 2

Query:  194 GFTLEELKAAGIPKKLAPTIGVFFYHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKPTVELVKVTQDMKSFKAYDKLRIERVNERHFG 550
            GFTLEELKAAGI K++A TIG+    RR+NRS E L  NVQRLK Y++KL++FPR+    K GDS  EE+  ATQ+ GP MPI       +   +T++ K F A+  LR+ R N R FG
Sbjct:   75 GFTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPRKVSAPKKGDSTEEEVKMATQLTGPVMPIKIVHKKEKARMITEEEKKFNAFANLRMARANARLFG 193

HSP 2 Score: 60.077 bits (144), Expect = 3.284e-37
Identity = 27/61 (44.26%), Postives = 33/61 (54.10%), Query Frame = 1

Query:    1 NGHFKKHWQNYLSTWYNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLR 183
            N HF K WQ  + TW+NQP                I PRP AGPLRP+V   T++YN K+R
Sbjct:   11 NPHFHKDWQKRVRTWFNQPARKLRRRKARQAKARRIAPRPVAGPLRPIVRCPTVRYNTKVR 71

[Close]

BLAST of CN181662 vs. ExPASy Swiss-Prot
Match: RL13_DROME (60S ribosomal protein L13 OS=Drosophila melanogaster GN=RpL13 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.570e-37
Identity = 62/120 (51.67%), Postives = 81/120 (67.50%), Query Frame = 2

Query:  194 GFTLEELKAAGIPKKLAPTIGVFFYHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPIAPEKP-TVELVKVTQDMKSFKAYDKLRIERVNERHFG 550
            GFTLEELK AGI    A TIG+    RRKN+SLE  Q N+QRLK Y++KL++FP   +K +AG+S+ EE   ATQ++GP +PI  E+P  VE  +VT+D K FKA+  LR  R + R  G
Sbjct:   74 GFTLEELKGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLILFPINEKKIRAGESSLEECKLATQLKGPVLPIKNEQPAVVEFREVTKDEKKFKAFATLRKARTDARLVG 193

HSP 2 Score: 58.9214 bits (141), Expect = 5.570e-37
Identity = 25/61 (40.98%), Postives = 34/61 (55.74%), Query Frame = 1

Query:    1 NGHFKKHWQNYLSTWYNQPXXXXXXXXXXXXXXXXIFPRPTAGPLRPVVHGQTLKYNMKLR 183
            N H+ K WQ ++ TW+NQP                +FPRP +G LRPVV   T++Y+ KLR
Sbjct:   10 NQHYHKWWQRHVKTWFNQPARKVRRHANRVKKAKAVFPRPASGALRPVVRCPTIRYHTKLR 70

The following BLAST results are available for this feature:

BLAST of CN181662 vs. ExPASy Swiss-Prot

BLAST of CN181662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26


Match Name	E-value	Identity	Description
RL131_ARATH	1.343e-70	79.83	60S ribosomal protein L13-1 OS=Arabidopsis thalian...	[more]
RL132_BRANA	7.209e-69	78.99	60S ribosomal protein L13-2 OS=Brassica napus PE=2...	[more]
RL131_BRANA	3.546e-68	78.15	60S ribosomal protein L13-1 OS=Brassica napus PE=2...	[more]
RL133_ARATH	3.867e-67	78.99	60S ribosomal protein L13-3 OS=Arabidopsis thalian...	[more]
RL132_ARATH	4.153e-60	73.11	Putative 60S ribosomal protein L13-2 OS=Arabidopsi...	[more]
RL13_TOBAC	2.388e-54	63.87	60S ribosomal protein L13 OS=Nicotiana tabacum GN=...	[more]
RL13_CHLSW	5.017e-45	59.48	60S ribosomal protein L13 OS=Chlamydomonas sp. (st...	[more]
RL13_DANRE	3.382e-40	56.30	60S ribosomal protein L13 OS=Danio rerio GN=rpl13 ...	[more]
RL13_ICTPU	3.284e-37	51.26	60S ribosomal protein L13 OS=Ictalurus punctatus G...	[more]
RL13_DROME	5.570e-37	51.67	60S ribosomal protein L13 OS=Drosophila melanogast...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS04_0001E19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001E19, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN181662 ID=CN181662; Name=CN181662; organism=Citrus sinensis; type=EST; length=552bp
AATGGGCACTTTAAGAAGCATTGGCAGAACTATCTCTCCACATGGTACAA
CCAACCTGCTCGCAAAAATCGACGACGAGTCGCTCGTCAAAAGAAGGCCG
TTAAAATCTTCCCTCGCCCTACTGCTGGGCCGCTTCGTCCCGTCGTTCAT
GGCCAGACTTTGAAATACAACATGAAATTAAGGTTTTTGTTTAGGCTTTA
CTCTTGAGGAACTCAAGGCTGCTGGAATTCCCAAGAAACTGGCTCCGACA
ATTGGTGTTTTTTTCTATCATCGACGCAAGAACCGTTCTCTTGAGGGTCT
TCAATCTAATGTTCAGAGGCTCAAGACTTACAAGGCTAAGTTGGTTGTTT
TCCCAAGACGTGCTCGCAAGTTCAAGGCTGGTGATTCTGCCCCTGAGGAA
TTGGCAACAGCAACTCAAGTACAAGGACCTTACATGCCCATTGCTCCTGA
GAAGCCTACTGTCGAGCTTGTTAAGGTTACTCAAGATATGAAGTCCTTCA
AGGCTTATGACAAACTCCGTATCGAGCGTGTGAACGAGCGCCATTTTGGT
GC