CN188663

Overview
NameCN188663
Unique NameCN188663
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3353 contig Csv1_Contig3353:431..1167. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188663 vs. ExPASy Swiss-Prot
Match: MUB2_ARATH (Membrane-anchored ubiquitin-fold protein 2 OS=Arabidopsis thaliana GN=MUB2 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.229e-33
Identity = 66/88 (75.00%), Postives = 80/88 (90.91%), Query Frame = -1
Query:    1 MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLSDIPGGVTTM 264
            MA V+DQLEIKFRL DGSDIGPK FP AT+VATLKE+V++QWP++KENGP+TVKDVKLISAG+ILENN+T+G+CRSP+ +  G VTTM
Sbjct:    1 MAEVKDQLEIKFRLNDGSDIGPKLFPDATTVATLKETVVAQWPRDKENGPKTVKDVKLISAGRILENNKTVGDCRSPVGNFSGAVTTM 88          
BLAST of CN188663 vs. ExPASy Swiss-Prot
Match: MUB1_ARATH (Membrane-anchored ubiquitin-fold protein 1 OS=Arabidopsis thaliana GN=MUB1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.927e-31
Identity = 62/88 (70.45%), Postives = 80/88 (90.91%), Query Frame = -1
Query:    1 MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLSDIPGGVTTM 264
            MA V +QLEIKFRLTDGSDIGPK+FP AT+V+ LKE+V+S+WP+EKENGP+TVK+VKLISAGK+LEN++T+ + RSP+S++ G VTTM
Sbjct:    1 MAEVHNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTTM 88          
BLAST of CN188663 vs. ExPASy Swiss-Prot
Match: MUB1_ORYSJ (Membrane-anchored ubiquitin-fold protein 1 OS=Oryza sativa subsp. japonica GN=MUB1 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.550e-29
Identity = 60/85 (70.59%), Postives = 75/85 (88.24%), Query Frame = -1
Query:    1 VQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLSDIPGGVTTM 255
            VQ+Q EIKFRL DG+DIGPK +PAA++VATLKES+++QWPK+KE GPRTV D+KLI+AGKILENN+TL EC+SP+ D   G+TTM
Sbjct:    5 VQEQFEIKFRLPDGTDIGPKRYPAASTVATLKESIVAQWPKDKEKGPRTVNDLKLINAGKILENNKTLSECKSPICDF-SGLTTM 88          
BLAST of CN188663 vs. ExPASy Swiss-Prot
Match: MUB6_ARATH (Membrane-anchored ubiquitin-fold protein 6 OS=Arabidopsis thaliana GN=MUB6 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.109e-24
Identity = 51/88 (57.95%), Postives = 70/88 (79.55%), Query Frame = -1
Query:    1 MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLSDIPGGVTTM 264
            MA  +D +E+KFRL DG+DIGP  +  + +V++LKE ++SQWPK+KEN P+TV D+KLI+AGKILENNRTL E R P+ ++PG + TM
Sbjct:    1 MAGEEDWIELKFRLADGTDIGPSKYNQSMTVSSLKEKLISQWPKDKENTPKTVNDMKLINAGKILENNRTLAESRLPVCELPGMIITM 88          
BLAST of CN188663 vs. ExPASy Swiss-Prot
Match: MUB3_ORYSJ (Membrane-anchored ubiquitin-fold protein 3 OS=Oryza sativa subsp. japonica GN=MUB3 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.226e-23
Identity = 49/88 (55.68%), Postives = 70/88 (79.55%), Query Frame = -1
Query:    1 MASVQDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLSDIPGGVTTM 264
            MA  ++ +E+KFRL DG+DIGP  +  +T+V+ LKE +L++WP++KE  P+TV D+KLI+AG+ILENNRTL E R P+ ++PGGV TM
Sbjct:    1 MAGGKEPIEVKFRLFDGTDIGPSKYDPSTTVSALKEFILARWPQDKEITPKTVNDLKLINAGRILENNRTLAESRVPVGEVPGGVITM 88          
BLAST of CN188663 vs. ExPASy Swiss-Prot
Match: MUB5_ARATH (Membrane-anchored ubiquitin-fold protein 5 OS=Arabidopsis thaliana GN=MUB5 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.147e-21
Identity = 47/86 (54.65%), Postives = 66/86 (76.74%), Query Frame = -1
Query:    1 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRS--PLSDIPGGVTTM 252
            +D +E+KFRL DG+DIGP  +    +VA+LKE +++QWPK+KEN P+ + +VKLI+ GKILENN+TL E RS   + ++PG VTTM
Sbjct:    4 EDLIELKFRLADGTDIGPSKYSQFMTVASLKEKIIAQWPKDKENAPKMINEVKLINGGKILENNKTLSEARSLITIGELPGIVTTM 89          
BLAST of CN188663 vs. ExPASy Swiss-Prot
Match: MUB3_ARATH (Membrane-anchored ubiquitin-fold protein 3 OS=Arabidopsis thaliana GN=MUB3 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.713e-21
Identity = 46/84 (54.76%), Postives = 64/84 (76.19%), Query Frame = -1
Query:    1 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLSDIPGGVTTM 252
            ++ ++IKFRL DGSDIGP  + AA++V  LK+ V+S WPK K   P+ + +VKLIS+GKILENN+T+G+C++P  DI GGV  M
Sbjct:    4 EESIDIKFRLYDGSDIGPFRYSAASTVDFLKQRVVSDWPKGKTVVPKGINEVKLISSGKILENNKTVGQCKTPFGDIAGGVIVM 87          
BLAST of CN188663 vs. ExPASy Swiss-Prot
Match: MUB4_ARATH (Membrane-anchored ubiquitin-fold protein 4 OS=Arabidopsis thaliana GN=MUB4 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.820e-20
Identity = 41/84 (48.81%), Postives = 63/84 (75.00%), Query Frame = -1
Query:    1 QDQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLSDIPGGVTTM 252
            +D +E+KFRL DGSD+GP  +    +V+ LKE ++S+WPK+K+  P++  D+KLI+AGKILEN +T+ +C++P  D+P  V TM
Sbjct:    4 EDLVELKFRLYDGSDVGPFQYSPTATVSMLKERIVSEWPKDKKIVPKSASDIKLINAGKILENGKTVAQCKAPFDDLPKSVITM 87          
BLAST of CN188663 vs. ExPASy Swiss-Prot
Match: MUB4_ORYSJ (Membrane-anchored ubiquitin-fold protein 4 OS=Oryza sativa subsp. japonica GN=MUB4 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.832e-19
Identity = 46/88 (52.27%), Postives = 62/88 (70.45%), Query Frame = -1
Query:    1 ASVQDQLEIKFRLTDGSDIGPKSFPA-ATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLSDIPGGVTTM 261
            A   +++E+KFRL DGSDIGP    A AT+VA LK+ V++ WPK+K   P+T  DVKLIS GKILEN++ + +CR+P  D+P    TM
Sbjct:   17 AEADEEVEVKFRLFDGSDIGPLRCNAVATTVAALKDRVVADWPKDKTIVPKTANDVKLISGGKILENDKNIAQCRAPFGDLPSTAITM 104          
BLAST of CN188663 vs. ExPASy Swiss-Prot
Match: MUB2_ORYSJ (Membrane-anchored ubiquitin-fold protein 2 OS=Oryza sativa subsp. japonica GN=MUB2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.091e-19
Identity = 45/83 (54.22%), Postives = 60/83 (72.29%), Query Frame = -1
Query:    1 DQLEIKFRLTDGSDIGPKSFPAATSVATLKESVLSQWPKEKENGPRTVKDVKLISAGKILENNRTLGECRSPLSDIPGGVTTM 249
            + +E++FRL DGSDIGP     AT+V  LKE VL++WP+ KE  PRTV DV +I+AG++LENNRTL E R+  ++ P G  TM
Sbjct:   12 EAVEVRFRLDDGSDIGPSMHDQATTVTALKEFVLARWPQGKEIAPRTVNDVTIINAGQVLENNRTLAESRNLAAESPEGPITM 94          
The following BLAST results are available for this feature:
BLAST of CN188663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
MUB2_ARATH2.229e-3375.00Membrane-anchored ubiquitin-fold protein 2 OS=Arab... [more]
MUB1_ARATH7.927e-3170.45Membrane-anchored ubiquitin-fold protein 1 OS=Arab... [more]
MUB1_ORYSJ2.550e-2970.59Membrane-anchored ubiquitin-fold protein 1 OS=Oryz... [more]
MUB6_ARATH1.109e-2457.95Membrane-anchored ubiquitin-fold protein 6 OS=Arab... [more]
MUB3_ORYSJ1.226e-2355.68Membrane-anchored ubiquitin-fold protein 3 OS=Oryz... [more]
MUB5_ARATH1.147e-2154.65Membrane-anchored ubiquitin-fold protein 5 OS=Arab... [more]
MUB3_ARATH9.713e-2154.76Membrane-anchored ubiquitin-fold protein 3 OS=Arab... [more]
MUB4_ARATH4.820e-2048.81Membrane-anchored ubiquitin-fold protein 4 OS=Arab... [more]
MUB4_ORYSJ1.832e-1952.27Membrane-anchored ubiquitin-fold protein 4 OS=Oryz... [more]
MUB2_ORYSJ9.091e-1954.22Membrane-anchored ubiquitin-fold protein 2 OS=Oryz... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006I10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006I10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188663 ID=CN188663; Name=CN188663; organism=Citrus sinensis; type=EST; length=732bp
CATGGTTGTAACTCCACCAGGGATATCACTTAACGGACTCCGGCACTCTC
CCAATGTTCTATTGTTCTCCAATATTTTTCCGGCACTTATTAACTTTACA
TCTTTCACTGTCCTTGGACCATTCTCTTTCTCTTTAGGCCATTGAGAAAG
AACGCTTTCTTTCAAGGTTGCAACACTTGTAGCAGCAGGAAAGCTCTTGG
GACCAATATCCGATCCATCGGTCAATCGGAACTTGATCTCTAACTGATCT
TGCACACTTGCCATTCTAAAGCTTTCTGATTGACTCCAAGGACCTCAAAG
ACTTTAAAATTCCAATCTCAGAGATCTTCACTGAAGCCTTCTACCAAAGT
ATACGTCAATCCTCAATAGGTTTACTTTTGAGCAATCAAAAACCCACCAG
AATACGCAGAAAGTTGCAGATTGATCAATATTCTCACTTTGGTGCGCTCA
AAAACTGATCCGGTCACTCCCTTTTTCCCCAGTTATTGTTTCAAAAATTC
CAAAACCTTAAGAAGAAGAAACAAGGTTGTGGCTTTTTTCAATAGTTAAT
AATAAAGAGACGAAATAAAATAAGTGTTTAGAGAGGAGGCAGTTTCAGCA
AAAGTCTCCAAATACTGAGTCTGGAGGAACTGCTTCGGAAGCTGATGGCA
ATAACCTGTCAACAACAACGGATCTTCCTAAAATGGTTCCTCCGCCACCA
CCTCCGAGGCATCAGCCCACTGTGCCTGGACC
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