CN181648

Overview
NameCN181648
Unique NameCN181648
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4317 contig Csv1_Contig4317:224..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181648 vs. ExPASy Swiss-Prot
Match: C3H18_ARATH (Zinc finger CCCH domain-containing protein 18 OS=Arabidopsis thaliana GN=At2g05160 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.726e-51
Identity = 109/224 (48.66%), Postives = 142/224 (63.39%), Query Frame = 2
Query:    5 VRLIDRPHGQHAVILAEDAPKYLENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPMYFSPQYVDMDSDLHSFSRGCETSRFIRKXXXXXXXXXXXXXXXXXXXXXXVRKPMP-NPPYFGGYMDGLKISEDRLNFPSAERIDYLIGVLN 673
            +RL+DRPHGQH+VILAEDA K++E   ER++ G I+ GSRQIYLTFPAES+FTE DVS YF +YG V+DVRIPCQQKRM+GFVTFAS++TVK ILAKGNPHF+C ARVLVKPYREKS+        +    M +  ++++ D ++++       S  +RK                      V K +P N  Y G   D  K++ +      AER+ YL+  LN
Sbjct:  278 IRLVDRPHGQHSVILAEDASKFVEYTGERNEHGAILAGSRQIYLTFPAESSFTEHDVSIYFTSYGHVEDVRIPCQQKRMYGFVTFASSETVKHILAKGNPHFICNARVLVKPYREKSRSSRYLDNYKPLHGMRYGSKFIERDIEMNTLPPRVSESSRMRK-------------PFLSEPEQSVSKSLPTNYSYLGFSSDDFKLTSNAEQEEQAERLSYLLDYLN 488          
BLAST of CN181648 vs. ExPASy Swiss-Prot
Match: C3H54_ORYSJ (Zinc finger CCCH domain-containing protein 54 OS=Oryza sativa subsp. japonica GN=Os08g0126700 PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.185e-46
Identity = 92/166 (55.42%), Postives = 121/166 (72.89%), Query Frame = 2
Query:    2 RVRLIDRPHGQHAVILAEDAPKYLENRNERS----DPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPM-YFSPQYVDMDSDLHSFSRGCETSRFIRK 484
            ++R+I+RPHGQH+V+LAEDA KY++ R        D G +   S QIYLTFPAESTF EDDV+NYF  YGPV DVRIPCQ++RMFGFV+F S +TV  IL + NPHF+CG+RVLVKPYREKSK VDR   + ++S + Y  P++ + D +L  ++   + SR +RK
Sbjct:  378 KIRVIERPHGQHSVVLAEDAAKYMDFRGGGGGGGGDTGSVPASSHQIYLTFPAESTFAEDDVANYFGQYGPVRDVRIPCQERRMFGFVSFQSPETVSTILMRRNPHFICGSRVLVKPYREKSKCVDRTCVDNIKSMVPYCPPRFFEFDQEL--YTAEYDASRLMRK 541          
BLAST of CN181648 vs. ExPASy Swiss-Prot
Match: C3H53_ORYSJ (Zinc finger CCCH domain-containing protein 53 OS=Oryza sativa subsp. japonica GN=Os07g0682400 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.028e-34
Identity = 74/113 (65.49%), Postives = 92/113 (81.42%), Query Frame = 2
Query:   53 EDAPKYLEN-RNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQER 385
            ++A K++   R ER+D   ++  GSRQIYLTFPA+STF E+DVSNYF+ YGPV DVRIP QQKRMFGFVTF   +TVK+ILAKGNPHF+C ARVLVKPY+EK K+ D KY+++
Sbjct:  336 DEAHKFMGRPRLERADFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPD-KYRKQ 447          
BLAST of CN181648 vs. ExPASy Swiss-Prot
Match: C3H23_ORYSJ (Zinc finger CCCH domain-containing protein 23 OS=Oryza sativa subsp. japonica GN=Os03g0329200 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.955e-34
Identity = 77/133 (57.89%), Postives = 99/133 (74.44%), Query Frame = 2
Query:   38 AVILA--EDAPKYLEN-RNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPMYFSPQYVD 424
            A++LA  ++A K++   R +R D   ++  GSRQIYLTFPA+STF E+DVSNYF+ YGPV DVRIP QQKRMFGFVTF   +TVK+ILAKGNPHF+C ARVLVKPY+EK K+ D+  +++       SP  +D
Sbjct:  327 ALMLAGGDEAHKFMGRPRLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKQQQGDFCCMSPTGLD 459          
BLAST of CN181648 vs. ExPASy Swiss-Prot
Match: C3H22_ORYSJ (Zinc finger CCCH domain-containing protein 22 OS=Oryza sativa subsp. japonica GN=Os03g0328900 PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 8.810e-34
Identity = 74/114 (64.91%), Postives = 91/114 (79.82%), Query Frame = 2
Query:   50 AEDAPKYLEN-RNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVD--RKYQ 379
            +++A K++   R +R D   ++  GSRQIYLTFPA+STF E+DVSNYF+ YGPV DVRIP QQKRMFGFVTF   +TVK+ILAKGNPHF+C ARVLVKPY+EK K+ D  RK+Q
Sbjct:  340 SDEAHKFMGRPRLDRVDFASMMNPGSRQIYLTFPADSTFREEDVSNYFSIYGPVHDVRIPYQQKRMFGFVTFVYPETVKLILAKGNPHFICDARVLVKPYKEKGKVPDKYRKHQ 453          
BLAST of CN181648 vs. ExPASy Swiss-Prot
Match: C3H46_ARATH (Zinc finger CCCH domain-containing protein 46 OS=Arabidopsis thaliana GN=At3g51950 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.503e-33
Identity = 75/130 (57.69%), Postives = 92/130 (70.77%), Query Frame = 2
Query:   38 AVILAEDAPKYLENRNERSDPGPIVT-GSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERMESPMYFSPQYVD 424
            A+++ ++  K    R ER D   +    SRQIYLTFPA+S F E+DVSNYF+T+GPV DVRIP QQKRMFGFVTF   +TVK ILAKGNPHFVC +RVLVKPY+EK K+ D KY+    +    SP  +D
Sbjct:  229 ALMIGDELQKLGRWRPERIDLSAMACPASRQIYLTFPADSRFREEDVSNYFSTFGPVQDVRIPYQQKRMFGFVTFVYPETVKSILAKGNPHFVCDSRVLVKPYKEKGKVPD-KYRTNQTTERELSPTGLD 357          
BLAST of CN181648 vs. ExPASy Swiss-Prot
Match: C3H55_ARATH (Zinc finger CCCH domain-containing protein 55 OS=Arabidopsis thaliana GN=At5g12440 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 3.133e-31
Identity = 59/93 (63.44%), Postives = 80/93 (86.02%), Query Frame = 2
Query:  113 TGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKLVDRKYQERME 391
            + SRQIYLTFPA+STF ++DV+ YF+ +G V DVRIP QQKRMFGFV+FA  +TVK++LA+GNPHF+C +RVLVKPY+EK K++D+K Q+ ++
Sbjct:  256 SASRQIYLTFPADSTFKDEDVATYFSLFGTVQDVRIPYQQKRMFGFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKEKGKVLDKKQQQLLQ 348          
BLAST of CN181648 vs. ExPASy Swiss-Prot
Match: C3H51_ORYSJ (Putative zinc finger CCCH domain-containing protein 51 OS=Oryza sativa subsp. japonica GN=Os07g0583300 PE=4 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.345e-31
Identity = 68/125 (54.40%), Postives = 86/125 (68.80%), Query Frame = 2
Query:    5 VRLIDRPHGQHAVILAEDAPKY------LENRNERSDPGPIVTGSRQIYLTFPAESTFTEDDVSNYFNTYGPVDDVRIPCQQKRMFGFVTFASADTVKMILAKGNPHFVCGARVLVKPYREKSKL 361
            +R+++R HGQ+ V+L EDA K       L +     D G   TGS QIY+TFP  S FT+DDV NYF  +GPV  VRIP Q+KRMFGFV+F   +TV++IL+KG  HF+CG RVLVK Y EKS+L
Sbjct:  283 IRVVEREHGQYHVVLVEDARKKYMDCLGLAHSCNLMDTG---TGSNQIYMTFPVHSKFTDDDVENYFKQFGPVSGVRIPYQEKRMFGFVSFLYTETVRLILSKGTAHFICGLRVLVKRYMEKSEL 404          
The following BLAST results are available for this feature:
BLAST of CN181648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
C3H18_ARATH2.726e-5148.66Zinc finger CCCH domain-containing protein 18 OS=A... [more]
C3H54_ORYSJ1.185e-4655.42Zinc finger CCCH domain-containing protein 54 OS=O... [more]
C3H53_ORYSJ3.028e-3465.49Zinc finger CCCH domain-containing protein 53 OS=O... [more]
C3H23_ORYSJ3.955e-3457.89Zinc finger CCCH domain-containing protein 23 OS=O... [more]
C3H22_ORYSJ8.810e-3464.91Zinc finger CCCH domain-containing protein 22 OS=O... [more]
C3H46_ARATH1.503e-3357.69Zinc finger CCCH domain-containing protein 46 OS=A... [more]
C3H55_ARATH3.133e-3163.44Zinc finger CCCH domain-containing protein 55 OS=A... [more]
C3H51_ORYSJ5.345e-3154.40Putative zinc finger CCCH domain-containing protei... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001E11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181648 ID=CN181648; Name=CN181648; organism=Citrus sinensis; type=EST; length=682bp
GAGGGTCCGGTTGATCGACAGACCTCATGGGCAACATGCAGTGATTTTGG
CTGAAGATGCACCAAAATACTTGGAGAATCGGAATGAGCGAAGTGATCCT
GGTCCAATTGTTACTGGATCCCGGCAGATATATCTAACCTTTCCAGCTGA
GAGCACTTTTACAGAAGATGATGTCTCCAACTACTTCAACACCTATGGAC
CTGTTGACGATGTAAGAATTCCATGCCAACAGAAACGGATGTTTGGATTT
GTAACCTTTGCCAGTGCAGATACTGTGAAAATGATTTTGGCAAAGGGAAA
TCCTCATTTTGTTTGTGGGGCTCGGGTTCTCGTGAAACCTTACCGGGAGA
AATCCAAGCTTGTTGATAGGAAGTACCAAGAGAGAATGGAGTCGCCAATG
TATTTTTCTCCGCAGTATGTTGATATGGATTCTGATCTTCACTCATTTTC
ACGAGGATGCGAAACTTCTAGGTTTATCAGGAAGCAGCTTTTGGAAGAGC
AGGAACAGGCCTTTGAACTTGAGAGGAGGCGTCTTGCAGAGCTTCAATTA
GTCCGAAAACCTATGCCCAATCCACCATATTTTGGCGGCTACATGGATGG
CTTGAAAATCTCAGAAGACCGTCTCAATTTTCCATCAGCAGAGCGTATCG
ATTATCTGATTGGAGTTTTGAACAACGGCTCA
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