CN188658

Overview
NameCN188658
Unique NameCN188658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4852 contig Csv1_Contig4852:2..721. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188658 vs. ExPASy Swiss-Prot
Match: HBP2_CASGL (Hemoglobin-2 OS=Casuarina glauca GN=HBII PE=3 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 3.083e-72
Identity = 135/156 (86.54%), Postives = 146/156 (93.59%), Query Frame = -1
Query:  185 EGRAFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIKSEMKPSS 652
            EGR FTEEQEALVVKSW+ MK NAGELGLKFFL+IFEIAPSAQKLFSFL+DSNVPLE+N KLK HAMSVF+MTCESAVQLRKAGKVTVRES+LKKLGA HFK+GV +EHFEVTKF+LLETIKEAVPE WSPEMK+AW EAYD+LVAAIK EMKPSS
Sbjct:    5 EGRGFTEEQEALVVKSWSAMKPNAGELGLKFFLKIFEIAPSAQKLFSFLKDSNVPLERNPKLKSHAMSVFLMTCESAVQLRKAGKVTVRESSLKKLGASHFKHGVADEHFEVTKFALLETIKEAVPETWSPEMKNAWGEAYDKLVAAIKLEMKPSS 160          
BLAST of CN188658 vs. ExPASy Swiss-Prot
Match: HBL1_MEDSA (Non-symbiotic hemoglobin 1 OS=Medicago sativa GN=MHB1 PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 6.869e-72
Identity = 134/154 (87.01%), Postives = 144/154 (93.51%), Query Frame = -1
Query:  185 RAFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIKSEMKPSS 646
            + FTEEQEALVVKSWN MKKN+ ELGLK FL+IFEIAPSAQKLFSFL+DS VPLEQN KLKPHAMSVF+MTCESAVQLRK+GKVTVRES+LKKLGA HFKYGVV+EHFEVTKF+LLETIKEAVPEMWSP MK+AW EAYDQLV AIKSEMKPSS
Sbjct:    7 KGFTEEQEALVVKSWNAMKKNSAELGLKLFLKIFEIAPSAQKLFSFLKDSKVPLEQNTKLKPHAMSVFLMTCESAVQLRKSGKVTVRESSLKKLGANHFKYGVVDEHFEVTKFALLETIKEAVPEMWSPAMKNAWGEAYDQLVNAIKSEMKPSS 160          
BLAST of CN188658 vs. ExPASy Swiss-Prot
Match: HBL1_GOSHI (Non-symbiotic hemoglobin 1 OS=Gossypium hirsutum GN=HB1 PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 8.971e-72
Identity = 135/156 (86.54%), Postives = 143/156 (91.67%), Query Frame = -1
Query:  185 EGRAFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIKSEMKPSS 652
            EG+ FTEEQEALVVKSW VMKK   ELGLKFFL+IFEIAPSA+KLFSFLRDSNVPLEQN KLKPHAMSVFVMTCESAVQLRKAGKVTVRES LKKLGA HFKYGVV+EHFEVTKF+LLETIKEAVP+MWS EMK+AW EAYD+LVAAIK EMK  S
Sbjct:    5 EGKVFTEEQEALVVKSWTVMKKKTAELGLKFFLKIFEIAPSAKKLFSFLRDSNVPLEQNTKLKPHAMSVFVMTCESAVQLRKAGKVTVRESNLKKLGATHFKYGVVDEHFEVTKFALLETIKEAVPDMWSDEMKNAWGEAYDRLVAAIKIEMKACS 160          
BLAST of CN188658 vs. ExPASy Swiss-Prot
Match: HBL_TRETO (Non-symbiotic hemoglobin OS=Trema tomentosa GN=GLB1 PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 6.429e-70
Identity = 132/161 (81.99%), Postives = 147/161 (91.30%), Query Frame = -1
Query:  185 MANINEGRAFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIKSEMKPSS 667
            M++    + FTEEQEALVVKSW VMKKN+ ELGLKFFL+IFEIAPSA+ LFS+L+DS +PLEQN KLKPHAM+VFVMTCESAVQLRKAGKVTVRES LK+LGA+HFK GVVNEHFE T+F+LLETIKEAVPEMWSPEMK+AW EAYDQLVAAIKSEMKPSS
Sbjct:    1 MSSSEVDKVFTEEQEALVVKSWAVMKKNSAELGLKFFLKIFEIAPSAKNLFSYLKDSPIPLEQNPKLKPHAMTVFVMTCESAVQLRKAGKVTVRESNLKRLGAIHFKNGVVNEHFE-TRFALLETIKEAVPEMWSPEMKNAWGEAYDQLVAAIKSEMKPSS 160          
BLAST of CN188658 vs. ExPASy Swiss-Prot
Match: HBPL_PARRI (Non-legume hemoglobin OS=Parasponia rigida PE=1 SV=2)

HSP 1 Score: 256.914 bits (655), Expect = 7.859e-68
Identity = 126/161 (78.26%), Postives = 144/161 (89.44%), Query Frame = -1
Query:  185 MANINEGRAFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIKSEMKPSS 667
            M++    + FTEEQEALVVK+W VMKKN+ ELGL+FFL+IFEIAPSA+ LFS+L+DS VPLEQN KLKPHA +VFVMTCESAVQLRKAGK TV+ES LK++GA+HFK GVVNEHFEVT+F+LLETIKEAVPEMWSPEMK+AW  AYDQLVAAIK EMKPSS
Sbjct:    1 MSSSEVNKVFTEEQEALVVKAWAVMKKNSAELGLQFFLKIFEIAPSAKNLFSYLKDSPVPLEQNPKLKPHATTVFVMTCESAVQLRKAGKATVKESDLKRIGAIHFKTGVVNEHFEVTRFALLETIKEAVPEMWSPEMKNAWGVAYDQLVAAIKFEMKPSS 161          
BLAST of CN188658 vs. ExPASy Swiss-Prot
Match: HBPL_PARAD (Non-legume hemoglobin OS=Parasponia andersonii PE=1 SV=2)

HSP 1 Score: 256.914 bits (655), Expect = 7.859e-68
Identity = 126/161 (78.26%), Postives = 144/161 (89.44%), Query Frame = -1
Query:  185 MANINEGRAFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIKSEMKPSS 667
            M++    + FTEEQEALVVK+W VMKKN+ ELGL+FFL+IFEIAPSA+ LFS+L+DS VPLEQN KLKPHA +VFVMTCESAVQLRKAGK TV+ES LK++GA+HFK GVVNEHFEVT+F+LLETIKEAVPEMWSPEMK+AW  AYDQLVAAIK EMKPSS
Sbjct:    1 MSSSEVNKVFTEEQEALVVKAWAVMKKNSAELGLQFFLKIFEIAPSAKNLFSYLKDSPVPLEQNPKLKPHATTVFVMTCESAVQLRKAGKATVKESDLKRIGAIHFKTGVVNEHFEVTRFALLETIKEAVPEMWSPEMKNAWGVAYDQLVAAIKFEMKPSS 161          
BLAST of CN188658 vs. ExPASy Swiss-Prot
Match: HBL1_ARATH (Non-symbiotic hemoglobin 1 OS=Arabidopsis thaliana GN=AHB1 PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.062e-64
Identity = 122/158 (77.22%), Postives = 140/158 (88.61%), Query Frame = -1
Query:  185 NEGR-AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVPEMWSPEMKSAWSEAYDQLVAAIKSEMKPSS 655
            +EG+  FTEEQEALVVKSW+VMKKN+ ELGLK F++IFEIAP+ +K+FSFLRDS +P EQN KLKPHAMSVFVM CESAVQLRK GKVTVRE+TLK+LGA H KYGVV+EHFEV K++LLETIKEAVPEMWSPEMK AW +AYD LVAAIK+EM  S+
Sbjct:    3 SEGKIVFTEEQEALVVKSWSVMKKNSAELGLKLFIKIFEIAPTTKKMFSFLRDSPIPAEQNPKLKPHAMSVFVMCCESAVQLRKTGKVTVRETTLKRLGASHSKYGVVDEHFEVAKYALLETIKEAVPEMWSPEMKVAWGQAYDHLVAAIKAEMNLSN 160          
BLAST of CN188658 vs. ExPASy Swiss-Prot
Match: HBL2_ORYSJ (Non-symbiotic hemoglobin 2 OS=Oryza sativa subsp. japonica GN=HB2 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.778e-62
Identity = 115/153 (75.16%), Postives = 140/153 (91.50%), Query Frame = -1
Query:  188 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVP-EMWSPEMKSAWSEAYDQLVAAIKSEMKPS 643
            +F+EEQEALV+KSW +MKK++  +GL+FFL+IFE+APSA ++FSFLR+S+VPLE+N KLK HAMSVFVMTCE+A QLRKAGKVTVR++TLK+LGA HFKYGV + HFEVT+F+LLETIKEAVP +MWSP MKSAWSEAY+QLVAAIK EMKP+
Sbjct:   16 SFSEEQEALVLKSWAIMKKDSANIGLRFFLKIFEVAPSASQMFSFLRNSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRDTTLKRLGATHFKYGVGDAHFEVTRFALLETIKEAVPVDMWSPAMKSAWSEAYNQLVAAIKQEMKPA 168          
BLAST of CN188658 vs. ExPASy Swiss-Prot
Match: HBL_MAIZE (Non-symbiotic hemoglobin OS=Zea mays GN=HB PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.215e-60
Identity = 117/164 (71.34%), Postives = 141/164 (85.98%), Query Frame = -1
Query:  185 SMANINEGRA-FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVP-EMWSPEMKSAWSEAYDQLVAAIKSEMKPSS 670
            ++A  ++G   F EEQEALV+KSW VMKK+A  LGL+FFL++FEIAPSA+++FSFLRDS+VPLE+N KLK HAMSVFVMTCE+A QLRKAGKVTVRE+TLK+LGA H +YGV + HFEVT F+LLETIKEA+P +MWS EMK AW+EAY QLVAAIK EMKP +
Sbjct:    2 ALAEADDGAVVFGEEQEALVLKSWAVMKKDAANLGLRFFLKVFEIAPSAEQMFSFLRDSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGVADGHFEVTGFALLETIKEALPADMWSLEMKKAWAEAYSQLVAAIKREMKPDA 165          
BLAST of CN188658 vs. ExPASy Swiss-Prot
Match: HBL_ZEAMP (Non-symbiotic hemoglobin OS=Zea mays subsp. parviglumis GN=HB PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.587e-60
Identity = 117/164 (71.34%), Postives = 141/164 (85.98%), Query Frame = -1
Query:  185 SMANINEGRA-FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEAVP-EMWSPEMKSAWSEAYDQLVAAIKSEMKPSS 670
            ++A  ++G   F EEQEALV+KSW VMKK+A  LGL+FFL++FEIAPSA+++FSFLRDS+VPLE+N KLK HAMSVFVMTCE+A QLRKAGKVTVRE+TLK+LGA H +YGV + HFEVT F+LLETIKEA+P +MWS EMK AW+EAY QLVAAIK EMKP +
Sbjct:    2 ALAEADDGAVVFGEEQEALVLKSWAVMKKDAANLGLRFFLKVFEIAPSAKQMFSFLRDSDVPLEKNPKLKTHAMSVFVMTCEAAAQLRKAGKVTVRETTLKRLGATHLRYGVADGHFEVTGFALLETIKEALPADMWSLEMKKAWAEAYSQLVAAIKREMKPDA 165          
The following BLAST results are available for this feature:
BLAST of CN188658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HBP2_CASGL3.083e-7286.54Hemoglobin-2 OS=Casuarina glauca GN=HBII PE=3 SV=1[more]
HBL1_MEDSA6.869e-7287.01Non-symbiotic hemoglobin 1 OS=Medicago sativa GN=M... [more]
HBL1_GOSHI8.971e-7286.54Non-symbiotic hemoglobin 1 OS=Gossypium hirsutum G... [more]
HBL_TRETO6.429e-7081.99Non-symbiotic hemoglobin OS=Trema tomentosa GN=GLB... [more]
HBPL_PARRI7.859e-6878.26Non-legume hemoglobin OS=Parasponia rigida PE=1 SV... [more]
HBPL_PARAD7.859e-6878.26Non-legume hemoglobin OS=Parasponia andersonii PE=... [more]
HBL1_ARATH1.062e-6477.22Non-symbiotic hemoglobin 1 OS=Arabidopsis thaliana... [more]
HBL2_ORYSJ3.778e-6275.16Non-symbiotic hemoglobin 2 OS=Oryza sativa subsp. ... [more]
HBL_MAIZE1.215e-6071.34Non-symbiotic hemoglobin OS=Zea mays GN=HB PE=2 SV... [more]
HBL_ZEAMP1.587e-6071.34Non-symbiotic hemoglobin OS=Zea mays subsp. parvig... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006I08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006I08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188658 ID=CN188658; Name=CN188658; organism=Citrus sinensis; type=EST; length=721bp
TTTTTCATGCAACATTAGGAACAAACTTTTGTTATTAAGATTCAAGAGCC
GATCAAAGAGTGATTATACAAAAAGGCACAAGAAACACACGCCCTGTACC
AATGTAAAGACTAACAAATAAACAATGCTCTTTTTGAAATTCTTTAATAT
TACAGGGGAAGAGAAATTTGTTCAGGAAACTCTAAGAGGAGGGCTTCATC
TCCGACTTAATGGCTGCAACCAATTGATCGTAAGCTTCTGACCAGGCACT
CTTCATTTCTGGCGACCACATCTCTGGTACTGCCTCTTTTATGGTTTCCA
GTAGTGAAAATTTTGTGACCTCAAAATGCTCATTAACAACACCATATTTG
AAGTGGACAGCTCCTAATTTTTTTAGAGTTGATTCTCTTACTGTCACTTT
GCCTGCTTTCCTCAGTTGCACTGCTGATTCACACGTCATAACAAAAACAG
ACATGGCGTGGGGCTTGAGCTTCTGGTTCTGCTCTAGAGGCACATTTGAG
TCTCTCAAGAATGAGAACAGCTTTTGGGCTGATGGTGCAATCTCAAAGAT
CCTCAAGAAGAATTTAAGACCCAATTCTCCAGCATTCTTCTTCATTACAT
TCCATGACTTGACAACTAAAGCTTCTTGCTCTTCAGTAAAGGCTCTACCT
TCGTTAATGTTGGCCATTGATTTCTTTTGGACACCTGAGGATTGAATGTG
ATACACAAAATGTTGTTGCCT
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