CN181646

Overview
NameCN181646
Unique NameCN181646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_BACSK (Ribosome-recycling factor OS=Bacillus clausii (strain KSM-K16) GN=frr PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.733e-14
Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGL 720
            +K  A ++M+ AI  LSREL KLR GRA+P +LD + VE  G + PLN LA V+V +++ L I PYD   +  +E AI+ S LGL
Sbjct:    5 IKADAKTRMDKAIDVLSRELAKLRAGRANPALLDRVTVEYYGAQTPLNQLASVTVPEARLLLITPYDKTAVASIEKAILKSDLGL 89          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_SERP5 (Ribosome-recycling factor OS=Serratia proteamaculans (strain 568) GN=frr PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.264e-14
Identity = 41/86 (47.67%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +++ A S+ME ++ A   +++K+RTGRASP +LD I+VE  G   PL  LA V+V DS+TL IN +D +    +E AI+SS LGLN
Sbjct:    5 IRKDADSRMEKSVEAFKNQISKIRTGRASPSILDGIMVEYYGASTPLRQLASVTVEDSRTLKINVFDRSISAAVEKAIMSSDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_SACD2 (Ribosome-recycling factor OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=frr PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.602e-14
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +K  +  +M  AI AL     K+RTGRA P +LD ++V   G   PL+ +A V+VLD++TLSI+P++ N + E+E AI+ S LGLN
Sbjct:    5 IKSDSEERMSRAIEALGTHFNKIRTGRAHPSILDGVMVSYYGSATPLSQVANVTVLDARTLSISPWEKNIVPEIEKAIMKSDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_BACHD (Ribosome-recycling factor OS=Bacillus halodurans GN=frr PE=3 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.123e-13
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGL 720
            V   A  +M  A  AL REL KLR GRA+P MLD I VE  G + PLN LA +SV +++ L I P+D +++ ++E AI  S LGL
Sbjct:    5 VLNDAEQRMTKATEALGRELAKLRAGRANPAMLDRITVEYYGAETPLNQLATISVPEARLLVIQPFDKSSISDIERAIQKSDLGL 89          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_KLEP3 (Ribosome-recycling factor OS=Klebsiella pneumoniae (strain 342) GN=frr PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.467e-13
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +++ A  +ME  + A   +++K+RTGRASP +LD I+VE  G   PL  LA V+V DS+TL IN +D +    +E AI++S LGLN
Sbjct:    5 IRKDAEIRMEKCVEAFKNQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSAAVEKAIMASDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_GEOTN (Ribosome-recycling factor OS=Geobacillus thermodenitrificans (strain NG80-2) GN=frr PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 37/85 (43.53%), Postives = 58/85 (68.24%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGL 720
            V + A  +M+ A+ A SREL  +R GRA+ G+L+ + V+  GV  P+N LA +SV +++ L I PYD + +KE+E AI++S LG+
Sbjct:    5 VIQQAKEKMDKAVQAFSRELATVRAGRANAGLLEKVTVDYYGVATPINQLATISVPEARMLVIQPYDKSVIKEMEKAILASDLGV 89          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_GEOKA (Ribosome-recycling factor OS=Geobacillus kaustophilus GN=frr PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 37/85 (43.53%), Postives = 58/85 (68.24%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGL 720
            V + A  +M+ A+ A +REL  +R GRA+ G+L+ + V+  GV  P+N LA +SV +++ L I PYD + +KE+E AI++S LGL
Sbjct:    5 VIQQAKEKMDKAVQAFTRELASIRAGRANAGLLEKVTVDYYGVPTPINQLASISVPEARLLVIQPYDKSAIKEMEKAILASDLGL 89          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_THIDA (Ribosome-recycling factor OS=Thiobacillus denitrificans (strain ATCC 25259) GN=frr PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13
Identity = 36/86 (41.86%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +K++A  +M   + AL  +L K+RTGRA  G+LDH++V+  G   P+  +A VS++DS+TL + PY+ N + ++E AI    LGLN
Sbjct:    9 IKQSAEQKMGKTLEALKNDLAKVRTGRAHAGILDHVLVDYYGNPTPVPQVANVSLVDSRTLGVQPYEKNMVGKIEKAIRDGDLGLN 94          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_PSEPW (Ribosome-recycling factor OS=Pseudomonas putida (strain W619) GN=frr PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13
Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  466 VKETAVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            +K+ A  +M  +I AL R L  +RTGRA P +LD + V   G +MPLN +A VSV D++TL I  +D N    +E AI++S LGLN
Sbjct:    5 IKKDAQDRMGKSIEALGRNLASIRTGRAHPSILDSVKVPAWGSEMPLNQVAAVSVEDARTLKIVAHDKNLSAAIEKAILTSDLGLN 90          
BLAST of CN181646 vs. ExPASy Swiss-Prot
Match: RRF_DESVM (Ribosome-recycling factor OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=frr PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13
Identity = 40/82 (48.78%), Postives = 56/82 (68.29%), Query Frame = 1
Query:  478 AVSQMEAAIVALSRELTKLRTGRASPGMLDHIIVETGGVKMPLNHLAVVSVLDSKTLSINPYDPNTLKELESAIVSSPLGLN 723
            A  +ME A+ +L RE  KLRTGRAS  ++D+I V+  G   P++ LA VSV DS+TL+I P+D +  + +E AI+ S LGLN
Sbjct:   10 AEERMEKALGSLDREFAKLRTGRASTSLVDNIKVDYYGTPTPISQLASVSVPDSRTLTIQPWDRSAFQLVEKAIMKSDLGLN 91          
The following BLAST results are available for this feature:
BLAST of CN181646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
RRF_BACSK1.733e-1448.24Ribosome-recycling factor OS=Bacillus clausii (str... [more]
RRF_SERP52.264e-1447.67Ribosome-recycling factor OS=Serratia proteamacula... [more]
RRF_SACD28.602e-1445.35Ribosome-recycling factor OS=Saccharophagus degrad... [more]
RRF_BACHD1.123e-1348.24Ribosome-recycling factor OS=Bacillus halodurans G... [more]
RRF_KLEP31.467e-1345.35Ribosome-recycling factor OS=Klebsiella pneumoniae... [more]
RRF_GEOTN1.916e-1343.53Ribosome-recycling factor OS=Geobacillus thermoden... [more]
RRF_GEOKA1.916e-1343.53Ribosome-recycling factor OS=Geobacillus kaustophi... [more]
RRF_THIDA3.269e-1341.86Ribosome-recycling factor OS=Thiobacillus denitrif... [more]
RRF_PSEPW3.269e-1346.51Ribosome-recycling factor OS=Pseudomonas putida (s... [more]
RRF_DESVM3.269e-1348.78Ribosome-recycling factor OS=Desulfovibrio vulgari... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001E10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181646 ID=CN181646; Name=CN181646; organism=Citrus sinensis; type=EST; length=723bp
CCCCGGGCTGCAGGCACAAATGTTGGGTCGATTGCAATAAGGTTTAGCAG
CAAACGGAGGATTTTATAATAACAAACAATAAACCCTAAACCCTCAAAAA
CAGAAAACCACTAAAACCCTAAATGGAATAGTTGGAAGTCTATCTATTGT
TTCATTTCTTCAAAACACAATTAAACAAGAAATAAATAACGAAAAATCAT
GGCAATGCATCTAAGACGAGCAATCTCTAATCGAAACGCAACACTGCTTC
TTAGAAATGGAAGCTCTTCTCTTCAATCACAGCGAAGCTGGTTCCATACT
CCCTGCTCCCGCAGTAATGGGTTCTTTAGGACCCGGTACAGTGATCCAAG
TCTTTCAGCTTTCGGCTTCATGCAAGATTATCGTCGAGGATTCGCCAAAG
GCAAAAGATCAAAGGATGATTCTGGTGCTGGAAGTACAGTTGAAATTGTG
GATATTGGTCCCACTGTTAAGGAAACTGCTGTCTCACAGATGGAAGCAGC
AATAGTTGCATTGTCACGCGAACTGACCAAATTAAGAACAGGAAGGGCGT
CACCAGGAATGCTTGACCACATTATTGTTGAAACTGGTGGAGTGAAGATG
CCCTTGAATCATTTAGCTGTTGTTTCAGTGCTAGATTCTAAGACCTTGTC
AATTAATCCATATGATCCAAATACCCTGAAAGAGTTAGAGAGTGCCATTG
TTTCATCTCCGCTAGGGTTAAAT
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