CN188657

Overview
NameCN188657
Unique NameCN188657
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1625 contig Csv1_Contig1625:348..978. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188657 vs. ExPASy Swiss-Prot
Match: Y2766_ARATH (Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis thaliana GN=At2g37660 PE=1 SV=2)

HSP 1 Score: 340.887 bits (873), Expect = 3.246e-93
Identity = 164/188 (87.23%), Postives = 181/188 (96.28%), Query Frame = 1
Query:   67 TVLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIGGADDLFIGDIRDSNSIIPAIQGIDALIILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLVGKDD 630
            TVLVTGAGGRTGQIVYKKLKERSEQ+ ARGLVRT+ESK+KI G D++FIGDIRD+ SI PA++GIDAL+ILTSAVP+MKP FDP+KGGRPEF+F++GAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTN+NHPLNS+GN NILVWKRKAEQYLADSGIPYTIIRAGGLQDK+GGIRELLVGKDD
Sbjct:   78 TVLVTGAGGRTGQIVYKKLKERSEQFVARGLVRTKESKEKINGEDEVFIGDIRDTASIAPAVEGIDALVILTSAVPQMKPGFDPSKGGRPEFFFDDGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNINHPLNSIGNANILVWKRKAEQYLADSGIPYTIIRAGGLQDKDGGIRELLVGKDD 265          
BLAST of CN188657 vs. ExPASy Swiss-Prot
Match: Y5224_ARATH (Uncharacterized protein At5g02240 OS=Arabidopsis thaliana GN=At5g02240 PE=1 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 4.249e-85
Identity = 153/188 (81.38%), Postives = 168/188 (89.36%), Query Frame = 1
Query:   67 TVLVTGAGGRTGQIVYKKLKERSEQYAARGLVRTEESKQKIGGADDLFIGDIRDSNSIIPAIQGIDALIILTSAVPKMKPDFDPAKGGRPEFYFEEGAYPEQVDWIGQKNQIDAAKAAGVKQIVLVGSMGGTNLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKEGGIRELLVGKDD 630
            TVLVTGA GRTGQIVYKKLKE S+++ A+GLVR+ + K+KIGG  D+FIGDI D++SI PA QGIDAL+ILTSAVPKMKP FDP KGGRPEF FE+G YPEQVDWIGQKNQIDAAK AGVK IV+VGSMGGTN +HPLN LGNGNILVWKRKAEQYLADSG PYTIIRAGGL DKEGG+RELLVGKDD
Sbjct:    6 TVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGGVRELLVGKDD 193          
The following BLAST results are available for this feature:
BLAST of CN188657 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y2766_ARATH3.246e-9387.23Uncharacterized protein At2g37660, chloroplastic O... [more]
Y5224_ARATH4.249e-8581.38Uncharacterized protein At5g02240 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006I07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006I07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188657 ID=CN188657; Name=CN188657; organism=Citrus sinensis; type=EST; length=631bp
AGTTAGGGCCGAAGGAGTTGNGTCAGTAAAACCGAAGCACTCTAAGTTTT
ATCGATGGCTAAGAGTACCGTTCTTGTCACCGGCGCTGGTGGTCGAACCG
GTCAAATAGTTTATAAGAAATTAAAGGAGAGGTCAGAGCAATATGCTGCT
AGAGGTTTGGTCAGAACTGAGGAGAGCAAGCAGAAAATTGGCGGAGCAGA
TGATCTTTTTATTGGTGACATAAGGGACTCTAATAGCATCATTCCTGCAA
TCCAAGGAATCGATGCTCTCATAATTCTCACAAGTGCAGTACCAAAGATG
AAACCTGATTTTGATCCTGCCAAAGGTGGAAGGCCTGAGTTCTACTTTGA
AGAGGGTGCATATCCTGAACAGGTTGATTGGATTGGTCAGAAAAATCAAA
TTGATGCTGCTAAGGCTGCTGGAGTGAAGCAAATTGTGTTGGTTGGATCG
ATGGGAGGAACAAATCTTAATCATCCCTTGAACAGTTTGGGCAATGGCAA
TATATTGGTTTGGAAAAGAAAGGCTGAGCAGTATTTGGCTGACTCTGGTA
TTCCATACACAATTATAAGGGCCGGAGGCCTTCAGGATAAAGAAGGTGGT
ATCCGAGAATTGCTTGTCGGTAAGGATGATG
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