CN188653

Overview
NameCN188653
Unique NameCN188653
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2317 contig Csv1_Contig2317:693..1468. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN188653 vs. ExPASy Swiss-Prot
Match: Y5621_ARATH (PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 3.767e-58
Identity = 111/171 (64.91%), Postives = 123/171 (71.93%), Query Frame = -1 
Query:  262 GCKKRTWLSLVAVHSDAWLLSVAFYFGARFGFDKSDRKRLFNMINELPTIFEVVTGTTKKQAXXXXXXXXXXXXXXXXXXKRGSETQAKFSKAV--QSKXXXXXXXXXXXXXXXXETLCGACGENYAADEFWICCDVCEKWFHGKCVKITPARAEHIKQYKCPSCSNKRAR 768
            G  ++ WLSLVAVHSDAWLL+VAF+FGARFGFDK+DRKRLFNM+N+LPTIFEVV GT KKQ                   KRGSE++AKFSK      +                ET CGACGE+YAADEFWICCD+CE WFHGKCVKITPARAEHIKQYKCPSCSNKRAR
Sbjct:   84 GMAEKDWLSLVAVHSDAWLLAVAFFFGARFGFDKADRKRLFNMVNDLPTIFEVVAGTAKKQGKDKSSVSNNSSNRSKSSSKRGSESRAKFSKPEPKDDEEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKRAR 254
The following BLAST results are available for this feature:
BLAST of CN188653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5621_ARATH3.767e-5864.91PHD finger protein At5g26210 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006I05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006I05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188653 ID=CN188653; Name=CN188653; organism=Citrus sinensis; type=EST; length=777bp
TTTTTCACAGAATGAGCACTATGTTGCATATAAATACGAGAAAATTCTGA
CCTTATACTAGTTTCTTCCCAGTGGCAGCTGGAAAACAATTCCCCCCCGG
GAGCACAAGACTCTAATTTATAACTAAATAAATAGCAAATTTCCAACCTA
CACAACATCCCACAGAACCTAGACAAAGCGTGATTAAGAACAAGCCTAAT
AGACAGTTAGAAGTCCATATAATGCCAGAATACACAGTCGCCAGTCCCAC
CATCATCAAGGCCGAGCTCTCTTGTTGCTACAAGATGGGCATTTGTACTG
TTTAATGTGCTCAGCCCTTGCTGGGGTGATCTTAACACACTTTCCATGGA
ACCATTTCTCACAGACATCACAGCAAATCCAGAACTCATCGGCTGCATAG
TTCTCCCCACAAGCCCCACACAGTGTCTCCCCATGCTCCTCCTCATCTTC
CTCTTCCAGACCTTCATCTTCTTCATCCTTTGATTGCACTGCCTTTGAAA
ACTTGGCTTGAGTTTCAGAGCCTCGCTTTGAGTTTGATTTAGATTTGCTG
CTACTGTGATTTGACACAGAAGACTTTTCTTTTGCCTGTTTCTTTGTTGT
CCCTGTCACAACCTCAAATATTGTTGGAAGTTCATTTATCATATTAAAAA
GACGTTTCCTATCAGATTTATCAAAACCAAACCTAGCACCAAAGTAAAAG
GCCACGGAGAGTAACCAAGCATCACTGTGGACAGCAACCAAAGACAACCA
GGTCCTTTTCTTGCATCCCATCTCTGG
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