CN188648

Overview
NameCN188648
Unique NameCN188648
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188648 vs. ExPASy Swiss-Prot
Match: TIM50_ARATH (Mitochondrial import inner membrane translocase subunit TIM50 OS=Arabidopsis thaliana GN=TIM50 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.251e-25
Identity = 70/190 (36.84%), Postives = 104/190 (54.74%), Query Frame = 1
Query:  193 MSSNVVRPRIFQILSKISNRNCSKYRRGFSSDTVSGAPKKEPIIASQSIVGDISXXXXXXXXXXXXXXNEV------RKSSWRFLTYGIVATLTGVTAGAGYLTYAYSTDEIEEKTRSLRESVNYTAGDDTSASE---KYQGLLYSAAMTVPAKAVEIYLDLRRLIEEQVRGFTEPTSDKLSSDLHPAEQ 735
            M+S V+R R+   L+K+ +RN   +    SS   +   +   + ++QS+  D                          +   ++L Y ++  LTG TA  GY ++AY+ DE+ EKT++ RES   T    +S  +   KYQ  LYSAAMT  A+A++ YL+LR ++EEQV+GFTEP S+KL  DLHPAEQ
Sbjct:    1 MASIVLRSRLLPRLAKLRSRNLRCFSAEASS--TNSTSRYSGVTSTQSMFSDFPPPNQPPPPPPPQVEAAAAAATGKERKGLKYLGYALLWALTGATAATGYASFAYTIDEVNEKTKAFRESATKTPVIKSSGIDVIDKYQTKLYSAAMTGSARAIDKYLELREIVEEQVKGFTEPLSEKLLPDLHPAEQ 188          
The following BLAST results are available for this feature:
BLAST of CN188648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TIM50_ARATH2.251e-2536.84Mitochondrial import inner membrane translocase su... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006I02_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188648 ID=CN188648; Name=CN188648; organism=Citrus sinensis; type=EST; length=737bp
ACAGTGTTAAACCGACTCCCAAACACCTCCAATCTTTCTCGATCGATCGT
AATTAGTACTTAACAGCCAACTCAAAACCCTACGACGGCCCCCCCAACAC
CTCTAAAACCCCATAAAATAAAAACCCCATAAAATAAAGAAACCCCCAAA
AAAAAAAGCCAAATATTTTTTCCTTCCCGAATGTAAAAGAAAATGTCTTC
AAATGTTGTCCGGCCTCGAATATTTCAAATTTTATCGAAAATAAGTAATC
GTAATTGCAGTAAATACAGAAGAGGTTTTAGCTCCGACACCGTTTCTGGT
GCTCCGAAGAAGGAGCCGATCATTGCTTCTCAATCGATCGTCGGCGACAT
CTCGGCGCCGCCGGAGGTTGAGGCAGCGGGGGAGGCGGCCGCGCCAAATG
AAGTGCGGAAGTCGTCGTGGAGGTTTCTCACGTATGGAATTGTTGCCACC
CTGACCGGCGTTACTGCTGGCGCTGGTTATCTTACTTATGCATACAGCAC
TGATGAGATAGAGGAGAAGACAAGGTCACTAAGAGAATCAGTGAATTATA
CTGCTGGGGATGACACATCTGCTTCTGAGAAATATCAGGGTTTGCTTTAC
TCAGCTGCAATGACAGTTCCTGCCAAAGCAGTTGAAATTTACTTGGATCT
AAGGAGGCTTATTGAAGAACAAGTTAGAGGGTTTACTGAACCAACCTCTG
ATAAGCTTTCTTCAGATTTGCATCCTGCAGAGCAACA
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