CN188647

Overview
NameCN188647
Unique NameCN188647
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length545
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188647 vs. ExPASy Swiss-Prot
Match: TIM50_ARATH (Mitochondrial import inner membrane translocase subunit TIM50 OS=Arabidopsis thaliana GN=TIM50 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 8.245e-54
Identity = 103/136 (75.74%), Postives = 119/136 (87.50%), Query Frame = -2
Query:  134 MYVDPVCERLDTNHCIRYRLSRGATKYQDGKHYRDLSKLNRDPAKILYVSGHAFESSLQPENCVPIKPYKLEPDDTALLDLIPFLEYVARNSPADIRAVLASYEKKDIAKEFLERSKDYQRRMQEQRQHNKSFWRR 541
            MYV PVCE+LD N  IRY+L+RGATKY++GKHYRDLSKLNRDP KIL+VS +AFES+LQPEN VPIKPYKLE DDTAL+DLIPFLEYVARNSPADIR VLAS+E+KDIAKEF++RS +YQ+R Q Q    + FWRR
Sbjct:  242 MYVLPVCEKLDPNGYIRYKLARGATKYENGKHYRDLSKLNRDPKKILFVSANAFESTLQPENSVPIKPYKLEADDTALVDLIPFLEYVARNSPADIRPVLASFERKDIAKEFIDRSIEYQKRKQGQLGQGR-FWRR 376          
BLAST of CN188647 vs. ExPASy Swiss-Prot
Match: TIM50_YEAST (Mitochondrial import inner membrane translocase subunit TIM50 OS=Saccharomyces cerevisiae GN=TIM50 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.566e-20
Identity = 53/119 (44.54%), Postives = 75/119 (63.03%), Query Frame = -2
Query:  191 MYVDPVCERLDTNHC-IRYRLSRGATKYQDGKHYRDLSKLNRDPAKILYVSGHAFESSLQPENCVPIKPYKLEPDDTALLDLIPFLEYVARNSPADIRAVLASYE-KKDIAKEFLERSK 541
            MY D + E+LD  H  + Y L +    Y+DG H +DLSKLNRD +K++ +        LQPEN +P++P+  E DD  L+ LIPFLEY+A     D+R +L S+E KK++A+EF  R K
Sbjct:  243 MYSDKIAEKLDPIHAFVSYNLFKEHCVYKDGVHIKDLSKLNRDLSKVIIIDTDPNSYKLQPENAIPMEPWNGEADD-KLVRLIPFLEYLATQQTKDVRPILNSFEDKKNLAEEFDHRVK 360          
BLAST of CN188647 vs. ExPASy Swiss-Prot
Match: TIM50_CANGA (Mitochondrial import inner membrane translocase subunit TIM50 OS=Candida glabrata GN=TIM50 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.566e-20
Identity = 54/137 (39.42%), Postives = 81/137 (59.12%), Query Frame = -2
Query:  140 MYVDPVCERLDTNHC-IRYRLSRGATKYQDGKHYRDLSKLNRDPAKILYVSGHAFESSLQPENCVPIKPYKLEPDDTALLDLIPFLEYVARNSPADIRAVLASY-EKKDIAKEFLERSKDYQRRM-QEQRQHNKSFW 541
            MY + + E++D  H  I Y L +    Y+DG H +DLSKLNRD  K++ +        LQPEN +P+ P+  + DD  LL LIPFLEY+A     D+R +L SY  K+++  EF +R +  + +  Q+Q++ N S W
Sbjct:  249 MYAEKIAEKMDPIHAFISYNLFKEHCVYKDGVHIKDLSKLNRDLKKVMIIDTDENSYKLQPENAIPMDPWDGKADD-KLLRLIPFLEYMATQQVEDVRPILKSYHNKRELPAEFEQRVQKLKNKFEQDQKKKNDSNW 384          
BLAST of CN188647 vs. ExPASy Swiss-Prot
Match: TIM50_EMENI (Mitochondrial import inner membrane translocase subunit tim50 OS=Emericella nidulans GN=tim50 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.964e-20
Identity = 50/127 (39.37%), Postives = 76/127 (59.84%), Query Frame = -2
Query:  164 NMYVDPVCERLDTNHCIRYRLSRGATKYQDGKHYRDLSKLNRDPAKILYVSGHAFESSLQPENCVPIKPYKLEPDDTALLDLIPFLEYVARNSPADIRAVLASYEKKDIAKEFLERSKDYQRRMQEQ 544
            +M  D V  +LD    IR+ L R AT+Y+DG++ +DLS LNRD +K++ +      + LQPEN + +  +   P D  L+ LIPFLEY+A     D+R VL S+E + I  EF +R K  + R +++
Sbjct:  302 SMMADQVLRKLDPYRIIRWPLFREATRYKDGEYIKDLSYLNRDLSKVILIDTKEEHARLQPENAIILDKWNGNPKDKTLVALIPFLEYLAGMGVDDVRTVLKSFEGQSIPIEFAKREKAMRERFEKE 428          
BLAST of CN188647 vs. ExPASy Swiss-Prot
Match: TIM50_ASPFU (Mitochondrial import inner membrane translocase subunit tim50 OS=Aspergillus fumigatus GN=tim50 PE=3 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.735e-19
Identity = 50/133 (37.59%), Postives = 80/133 (60.15%), Query Frame = -2
Query:  158 NMYVDPVCERLDTNHCIRYRLSRGATKYQDGKHYRDLSKLNRDPAKILYVSGHAFESSLQPENCVPIKPYKLEPDDTALLDLIPFLEYVARNSPADIRAVLASYEKKDIAKEFLERSK----DYQRRMQEQRQ 544
            +M  D V  +LD    IR+ L R AT+Y+DG++ +DLS LNRD +K++ +      + LQPEN + +  +  +P D  L+ LIPFLEY+A     D+R VL S+E   I  EF +R +     +++ ++E+R+
Sbjct:  273 SMMADQVLRKLDPYRIIRWPLFREATRYKDGEYIKDLSYLNRDLSKVILIDTKEEHARLQPENAIILDKWLGDPKDKNLVALIPFLEYIAGMGVEDVRPVLKSFEGTSIPVEFAKRERIMREKFEKELEEERK 405          
BLAST of CN188647 vs. ExPASy Swiss-Prot
Match: TIM50_GIBZE (Mitochondrial import inner membrane translocase subunit TIM50 OS=Gibberella zeae GN=TIM50 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.125e-18
Identity = 48/128 (37.50%), Postives = 77/128 (60.16%), Query Frame = -2
Query:  149 DPVCERLDTNHCIRYRLSRGATKYQDGKHYRDLSKLNRDPAKILYVSGHAFESSLQPENCVPIKPYKLEPDDTALLDLIPFLEYVARNSPADIRAVLASYEKKDIAKEFLERSKDYQRRMQEQRQHNK 532
            +PV  +LD    I + L R ATK++DG+  +DLS LNRD +K++ +   A     QP+N + + P+K + DD  L++LIPFLEY+     +D+R V+ S++ KDI  EF  R    ++  Q ++  +K
Sbjct:  292 EPVMRKLDPFRLILWPLYREATKFEDGEIVKDLSYLNRDLSKVIIIDTKAKHVRNQPDNAIILDPWKGDKDDKNLVNLIPFLEYIHTMQYSDVRKVIKSFDGKDIPTEFARREAIARKEFQAKQLTHK 419          
BLAST of CN188647 vs. ExPASy Swiss-Prot
Match: TIM50_DEBHA (Mitochondrial import inner membrane translocase subunit TIM50 OS=Debaryomyces hansenii GN=TIM50 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.582e-18
Identity = 51/131 (38.93%), Postives = 77/131 (58.78%), Query Frame = -2
Query:  155 MYVDPVCERLDTNHC-IRYRLSRGATKYQDGKHYRDLSKLNRDPAKILYVSGHAFESSLQPENCVPIKPYKLEPDDTALLDLIPFLEYVARNSPADIRAVLASY-EKKDIAKEFLERSKDYQRRMQEQRQH 541
            MY +    +LD  H  + Y L R A +Y+DGK  +DLS LNRD  K + +       S+QP+N +P+KP+    DDT L+ LIPFLEY+A     D+R +L S+ +K +I +EF ER    + + ++  +H
Sbjct:  241 MYSENTVGKLDPFHAYVSYALFREACRYKDGKLVKDLSLLNRDLGKTVLIDVEEDSWSMQPDNAIPMKPWDGSYDDT-LVKLIPFLEYLATQPVKDVRPILNSFKDKSNIVQEFAEREAKLREQWKKDNKH 370          
BLAST of CN188647 vs. ExPASy Swiss-Prot
Match: TIM50_BOVIN (Mitochondrial import inner membrane translocase subunit TIM50 OS=Bos taurus GN=TIMM50 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.521e-18
Identity = 49/124 (39.52%), Postives = 72/124 (58.06%), Query Frame = -2
Query:  158 PVCERLDTNHCIRYRLSRGATKYQDGKHYRDLSKLNRDPAKILYVSGHAFESSLQPENCVPIKPYKLEPDDTALLDLIPFLEYVARNSPADIRAVLASYEKKDIAKEFLERSKDYQRRMQEQRQ 529
            P+ + +D +  I YRL R AT+Y DG H +D+S LNRDPA+++ V        LQP N V ++P+    DD  LLDL  FL+ +A N   D+R VL  Y    + ++ LE  K  Q R++++ Q
Sbjct:  205 PLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVLEHYA---LEEDPLEAFKQRQSRLEQEEQ 325          
BLAST of CN188647 vs. ExPASy Swiss-Prot
Match: TIM50_MOUSE (Mitochondrial import inner membrane translocase subunit TIM50 OS=Mus musculus GN=Timm50 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.624e-17
Identity = 49/124 (39.52%), Postives = 72/124 (58.06%), Query Frame = -2
Query:  158 PVCERLDTNHCIRYRLSRGATKYQDGKHYRDLSKLNRDPAKILYVSGHAFESSLQPENCVPIKPYKLEPDDTALLDLIPFLEYVARNSPADIRAVLASYEKKDIAKEFLERSKDYQRRMQEQRQ 529
            P+ + +D +  I YRL R AT+Y +G H +D+S LNRDPA+++ V        LQP N V ++P+    DD  LLDL  FL+ +A N   D+R VL  Y  +D   + LE  K  Q R++++ Q
Sbjct:  203 PLIDSVDPHGFISYRLFRDATRYMEGHHVKDISCLNRDPARVVVVDCKKEAFRLQPFNGVALRPWDGNSDDRVLLDLSAFLKTIALNQVEDVRTVLEHYALED---DPLEAFKQRQSRLEQEEQ 323          
BLAST of CN188647 vs. ExPASy Swiss-Prot
Match: TIM50_PONAB (Mitochondrial import inner membrane translocase subunit TIM50 OS=Pongo abelii GN=TIMM50 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.121e-17
Identity = 49/124 (39.52%), Postives = 71/124 (57.26%), Query Frame = -2
Query:  158 PVCERLDTNHCIRYRLSRGATKYQDGKHYRDLSKLNRDPAKILYVSGHAFESSLQPENCVPIKPYKLEPDDTALLDLIPFLEYVARNSPADIRAVLASYEKKDIAKEFLERSKDYQRRMQEQRQ 529
            P+ + +D +  I YRL R AT+Y DG H +D+S LNRDPA+++ V        LQP N V ++P+    DD  LLDL  FL+ +A N   D+R VL  Y  +D   + L   K  Q R++++ Q
Sbjct:  203 PLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVLEHYALED---DPLAAFKQRQSRLEQEEQ 323          
The following BLAST results are available for this feature:
BLAST of CN188647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
TIM50_ARATH8.245e-5475.74Mitochondrial import inner membrane translocase su... [more]
TIM50_YEAST4.566e-2044.54Mitochondrial import inner membrane translocase su... [more]
TIM50_CANGA4.566e-2039.42Mitochondrial import inner membrane translocase su... [more]
TIM50_EMENI5.964e-2039.37Mitochondrial import inner membrane translocase su... [more]
TIM50_ASPFU1.735e-1937.59Mitochondrial import inner membrane translocase su... [more]
TIM50_GIBZE1.125e-1837.50Mitochondrial import inner membrane translocase su... [more]
TIM50_DEBHA5.582e-1838.93Mitochondrial import inner membrane translocase su... [more]
TIM50_BOVIN9.521e-1839.52Mitochondrial import inner membrane translocase su... [more]
TIM50_MOUSE1.624e-1739.52Mitochondrial import inner membrane translocase su... [more]
TIM50_PONAB2.121e-1739.52Mitochondrial import inner membrane translocase su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006I02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188647 ID=CN188647; Name=CN188647; organism=Citrus sinensis; type=EST; length=545bp
GCATTGGCTTGCAAGTACAAAAGGCCTCGACGAATTCCACAACAATGTCT
TTCACGACAATCTGTTTCTCCTTCCAAAAAAAAACTATTTCAATCCCACA
ACTATCTGCTCCGCTTTTTCACATGCGTGCTCAACGTCTCCAGAAGCTTT
TATTATGCTGCCTTTGCTCTTGCATTCGCCTTTGATAGTCTTTAGAGCGC
TCAAGGAACTCTTTTGCAATATCTTTTTTTTCATATGATGCTAGTACCGC
TCTGATATCAGCTGGACTATTGCGGGCAACGTATTCAAGGAATGGAATAA
GATCCAGCAGTGCTGTATCATCAGGCTCAAGCTTATACGGCTTTATCGGA
ACACAGTTTTCCGGCTGAAGACTCGACTCAAATGCATGGCCACTCACATA
TAAAATTTTAGCGGGGTCTCTATTCAACTTAGAAAGATCCCTATAATGCT
TGCCATCCTGATACTTGGTAGCGCCCCTTGATAGCCTGTACCGTATACAA
TGGTTCGTATCCAACCGCTCACAAACAGGATCAACATACATATTA
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