CN188643

Overview
NameCN188643
Unique NameCN188643
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN188643 vs. ExPASy Swiss-Prot
Match: TIM16_SCHPO (Mitochondrial import inner membrane translocase subunit tim16 OS=Schizosaccharomyces pombe GN=pam16 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 44/113 (38.94%), Postives = 65/113 (57.52%), Query Frame = 1 
Query:  103 RIIAQLIVMGSGIMARAVVQAYRQALANASKSGVAQETVQNIRRASKM--MAEPEARQILGVTEQSSWE-EILKKYDNLFEQN--AKNGSFYLQSKVHRAKECLETVYQKKHQ 426
            R + + I++GS +M++A VQAY+Q +ANA++    Q        A +   M   EA  IL +  +S  E E+ K++  +FE N   K GSFYLQSKV RA E L++   +K Q
Sbjct:    5 RAVGRFIIVGSQVMSKAFVQAYKQMIANAAQQSTGQAAASKSSTAVRRGEMTIQEAGSILNIKPESLEEGELEKRFQKMFEINDPKKGGSFYLQSKVFRAHEKLKSELDQKIQ 117
The following BLAST results are available for this feature:
BLAST of CN188643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TIM16_SCHPO1.631e-1138.94Mitochondrial import inner membrane translocase su... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0006H22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006H22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188643 ID=CN188643; Name=CN188643; organism=Citrus sinensis; type=EST; length=686bp
GCGTATCTTCGTCCCTTCCCTTGTGTCGCTCAGGTCCTGAAGTAATTCGC
AGTGCCTACAGTCCCTCGATATATATTTACTTTTTCTTTACTGATGGCTG
CGAGAATTATTGCTCAATTGATAGTGATGGGTTCTGGGATAATGGCAAGG
GCTGTTGTTCAAGCATACCGTCAAGCACTTGCGAATGCCTCCAAATCTGG
TGTTGCTCAAGAAACAGTGCAAAACATCAGGAGGGCAAGCAAAATGATGG
CAGAACCAGAGGCAAGGCAGATTCTTGGTGTCACCGAGCAGTCATCATGG
GAAGAAATCTTGAAGAAATATGACAACTTGTTTGAACAAAATGCCAAAAA
TGGGAGCTTTTACCTACAATCAAAGGTTCACAGAGCTAAGGAATGCTTAG
AAACAGTTTACCAGAAGAAACATCAGGGGACTGAGGATTCTTAACCAGCA
AAGGTGTACTTAGCTCTCTTGTATTTTTTTTTTCTTCCAGCCATTCAATA
GTCAGCTGAGTCTTATGGCTGAAATTATTAAATTTTGATCCCTATTAGTT
ACCACAGTGGTGATGTGTTGATCTTGCATTCACTATAGCATATTGCTATT
TTATTGGTGTGGTAATGTTATTAGAAAAAGGGTATATTTGTAACATAGTA
TGCGAGATATTTTAATGGTTCAACTTCTTATGTTAA
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