CN181601

Overview
NameCN181601
Unique NameCN181601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1007 contig Csv1_Contig1007:8..629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN181601 vs. ExPASy Swiss-Prot
Match: TIF3B_ARATH (Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.383e-16
Identity = 53/131 (40.46%), Postives = 74/131 (56.49%), Query Frame = 2 
Query:  230 VAQNDAGSAAGLDFSGNEVFNNTIRATAIPTSGVNATDLAPTQLTIFYGGKVCVFDAIPADKVREIMLIAASSATVTNTSDMKTDNTNCPASSPVLTRSPSLQSTASALASPRAQSYPVQRNLLCKLQAEL 622
            VA  D G+A        E   N +R+T I T+      + P QLTIF+GG V VFD +P++KV+EI+ IAA +    N++ +       P SSP L R+PS  ST S +ASP AQ +P+Q    C+  A+L
Sbjct:   18 VADGDGGAAEIGGTGSVEKSINEVRSTEIQTA---EPTVPPNQLTIFFGGSVTVFDGLPSEKVQEILRIAAKAMETKNSTSIS------PVSSPALNRAPSFSST-SNVASPAAQPFPIQPISFCRSTADL 138
The following BLAST results are available for this feature:
BLAST of CN181601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TIF3B_ARATH2.383e-1640.46Protein TIFY 3B OS=Arabidopsis thaliana GN=TIFY3B ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0001D04_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181601 ID=CN181601; Name=CN181601; organism=Citrus sinensis; type=EST; length=623bp
GAGGGTCAACAACAACCACCACAAAAAGGCAAAATCAAAATTAAAACCAA
AGCAAAGGCGAGGAAGCTGCGAGAGAAAATTAGAAAAATTGAAAAAAAAT
TAGGAGAAGAAGAGGAAGGAGCCTGGAAATTTCTCGAGTTTAATTCAAAT
GGAGGAATTTGGGACTGTTGATGAAGTGAAGCCGAAGGCTGAGGCCGGAA
TGGAAGTAGACGATAAGAAGAAGCATGAGGTTGCGCAAAACGACGCCGGA
TCTGCTGCAGGGCTTGATTTTTCGGGGAACGAGGTGTTTAACAACACCAT
CAGGGCCACGGCAATCCCAACTTCTGGAGTGAATGCCACGGACCTTGCTC
CAACTCAGCTTACGATCTTCTATGGTGGAAAAGTGTGTGTATTTGATGCA
ATTCCGGCAGACAAGGTTCGTGAAATTATGCTTATTGCTGCCTCTTCTGC
CACTGTTACTAACACAAGTGACATGAAGACGGACAATACCAACTGTCCTG
CCTCTTCACCAGTTCTAACAAGGTCTCCTTCACTGCAAAGCACTGCAAGT
GCTTTGGCATCACCTCGGGCACAATCATATCCTGTTCAAAGGAATCTCCT
CTGTAAATTGCAAGCTGAACTAC
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