CN188638

Overview
NameCN188638
Unique NameCN188638
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13383 contig Csv1_Contig13383:130..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188638 vs. ExPASy Swiss-Prot
Match: COPB1_ARATH (Coatomer subunit beta-1 OS=Arabidopsis thaliana GN=At4g31480 PE=1 SV=2)

HSP 1 Score: 356.295 bits (913), Expect = 9.179e-98
Identity = 177/232 (76.29%), Postives = 201/232 (86.64%), Query Frame = 1
Query:    7 RVCTCALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEEGEDTDSSKKXXXXXXXXXXXXRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRESEELKAKAQISHAQPDDLIDFYHL 702
            +VC CALWIIGEYC SLSEVE+GI+TI QCLGELPF+SVSEE E T++SKK            R+P +LADGTYATQSAASET FS PT+VQG+LTSGNLR+LLLTGDFFLGAVVACTLTKLVLRLEEVQ S+ EVNK  +QALLIMVSMLQLGQSPV PHPIDNDS++RIV+CI+LLC+  D ++KIWL+SCRQSFVKM+SEKQLRE EELKAK Q +HAQPDDLIDF+HL
Sbjct:  448 KVCPCALWIIGEYCLSLSEVESGISTITQCLGELPFYSVSEESEPTETSKKIQPTSSAMVSS-RKPVILADGTYATQSAASETTFSSPTVVQGSLTSGNLRALLLTGDFFLGAVVACTLTKLVLRLEEVQSSKTEVNKTVTQALLIMVSMLQLGQSPVSPHPIDNDSYERIVLCIKLLCHRNDEMKKIWLESCRQSFVKMISEKQLREMEELKAKTQTTHAQPDDLIDFFHL 678          
BLAST of CN188638 vs. ExPASy Swiss-Prot
Match: COPB1_ORYSJ (Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica GN=Os11g0174000 PE=2 SV=1)

HSP 1 Score: 351.673 bits (901), Expect = 2.261e-96
Identity = 174/233 (74.68%), Postives = 200/233 (85.84%), Query Frame = 1
Query:    7 RVCTCALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEEGEDTDSSKKXXXXXXXXXXXXRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSG-NLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRESEELKAKAQISHAQPDDLIDFYHL 702
            RVC+CALWI+GEY  SLSEVE+ I+TIKQCLG+LPF++VSEEGE TD+SK             RRP VLADGTYATQSAA+ETA S P +  G+L+S  NLRSL+L+GDFFL AVVACTLTKLVLRLEEVQPS+ E NKAS+ ALLIMVS+LQLGQS  LPHPIDNDS+DRIV+C+RLLCNTGD++RK+WLQSCRQSF KML+EKQ RE+EE+KAKAQISHAQPDDLIDFYHL
Sbjct:  450 RVCSCALWILGEYSLSLSEVESAISTIKQCLGDLPFYTVSEEGESTDASKPAQPVVNSVTVSSRRPVVLADGTYATQSAATETAISSPAVAPGSLSSTQNLRSLILSGDFFLAAVVACTLTKLVLRLEEVQPSKAEANKASTGALLIMVSILQLGQSSYLPHPIDNDSYDRIVLCVRLLCNTGDDVRKVWLQSCRQSFTKMLAEKQFRETEEMKAKAQISHAQPDDLIDFYHL 682          
BLAST of CN188638 vs. ExPASy Swiss-Prot
Match: COPB2_ARATH (Coatomer subunit beta-2 OS=Arabidopsis thaliana GN=At4g31490 PE=1 SV=2)

HSP 1 Score: 351.288 bits (900), Expect = 2.953e-96
Identity = 175/232 (75.43%), Postives = 200/232 (86.21%), Query Frame = 1
Query:    7 RVCTCALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEEGEDTDSSKKXXXXXXXXXXXXRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRESEELKAKAQISHAQPDDLIDFYHL 702
            +VC CALWIIGEYC SLSEVE+GI+TI QCLGELPF+SVSEE E T++SKK            R+P +LADGTYATQSAASET FS PT+VQG+LTSGNLR+LLLTGDFFLGAVVACTLTKLVLRLEEVQ S+ EVNK  SQALLIMVS+LQLGQSPV PHPIDNDS++RI++CI+LLC+    ++KIWL+SCRQSFVKM+SEKQLRE EELKAK Q +HAQPDDLIDF+HL
Sbjct:  448 KVCPCALWIIGEYCLSLSEVESGISTITQCLGELPFYSVSEESEPTETSKKIQPTSSAMVSS-RKPVILADGTYATQSAASETTFSSPTVVQGSLTSGNLRALLLTGDFFLGAVVACTLTKLVLRLEEVQSSKTEVNKTVSQALLIMVSILQLGQSPVSPHPIDNDSYERIMLCIKLLCHRNVEMKKIWLESCRQSFVKMISEKQLREMEELKAKTQTTHAQPDDLIDFFHL 678          
BLAST of CN188638 vs. ExPASy Swiss-Prot
Match: COPB2_ORYSJ (Coatomer subunit beta-2 OS=Oryza sativa subsp. japonica GN=Os01g0281400 PE=3 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 1.791e-93
Identity = 170/233 (72.96%), Postives = 199/233 (85.41%), Query Frame = 1
Query:    7 RVCTCALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEEGEDTDSSKKXXXXXXXXXXXXRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSG-NLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRESEELKAKAQISHAQPDDLIDFYHL 702
            RVC+CALWI+GEY  SLSEVEN I+TIKQCLG++PF++VSEEGE TDS+K             RRP VLADGTYATQSAA+E A S P++  G+L+S  NLRSL+L+GDFFL AV++CTLTKLVLRLEEVQPS VEVNKA + ALL+M S+LQLGQS  LPHPIDNDS+DRIV+C+RLLCNTGD++RK+WLQSCRQSF KML+EKQ RE+EE+KAKAQISHAQPDDLIDFYHL
Sbjct:  449 RVCSCALWILGEYSLSLSEVENAISTIKQCLGDVPFYTVSEEGEATDSAKPAQPVVNSVTVSSRRPVVLADGTYATQSAATE-AISTPSVAPGSLSSTLNLRSLILSGDFFLAAVISCTLTKLVLRLEEVQPSMVEVNKACTGALLVMTSILQLGQSSYLPHPIDNDSYDRIVLCVRLLCNTGDDVRKVWLQSCRQSFAKMLAEKQFRETEEMKAKAQISHAQPDDLIDFYHL 680          
BLAST of CN188638 vs. ExPASy Swiss-Prot
Match: COPB_DROME (Coatomer subunit beta OS=Drosophila melanogaster GN=betaCop PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 7.177e-26
Identity = 83/250 (33.20%), Postives = 120/250 (48.00%), Query Frame = 1
Query:    7 RVCTCALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEE---GEDTDSSKKXXXXXXXXXXXXRRPA---------VLADGTYATQSAASETAFS-----PPTIVQGTLTSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRESEELKAKAQ-ISHAQPDDLIDFYHL 702
            ++   A+WI+GEY +  S++   IA I+Q LGE+P     +    G+ T+  K+                         V +DGTYATQSA S    +     PP           LR  L+ GDFF+GA ++ TLTKL LR  E++      N+ ++Q +LIM S+L LG+S     PI ND  DRI VC+R L         ++   CR++  KML  +   +   LK K +  +  QPDD + F  L
Sbjct:  450 KIHRAAVWILGEYVEG-SQILEVIAVIQQTLGEVPMVEAEQRRLAGDQTEEQKQQQGSAGGNAAGSAAEGSGSGNASNKVTSDGTYATQSAYSLAPVAKAEKRPP-----------LRQYLMDGDFFIGAALSATLTKLALRYAELETEARAQNRLTTQVMLIMSSILHLGKSGFPSKPITNDDTDRIFVCLRTLSERTPEAISVFTLYCREALGKMLDAQHDEDQRMLKEKQKATAKVQPDDPVLFAQL 687          
BLAST of CN188638 vs. ExPASy Swiss-Prot
Match: COPB_RAT (Coatomer subunit beta OS=Rattus norvegicus GN=Copb1 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.727e-25
Identity = 78/229 (34.06%), Postives = 122/229 (53.28%), Query Frame = 1
Query:   22 ALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEEGEDTDSSKKXXXXXXXXXXXXRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRE--SEELKAKAQISHAQPDDLIDFYHL 702
            ALWI+GEYC +  ++++ +  +++ LGE+P    SE  ++    K              +  V   GTYATQSA S    S PT  +       LR  LL GDFF+ A +A TLTK+ LR   +   + + N   ++A+L+M ++L LG+S +   PI +D  DRI +C+++L      +  I+ + CRQS  +MLS K   E  S++ +++ +    QPDD I F  L
Sbjct:  458 ALWILGEYCSTKEDIQSVMTEVRRSLGEIPIVE-SEIKKEAGELKPEEEITVGPV----QKLVTEMGTYATQSALSS---SRPTKKEEDRPP--LRGFLLDGDFFVAASLATTLTKIALRYVALVQEKKKQNSFVAEAMLLMATILHLGKSSLPKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSLSQMLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQL 676          
BLAST of CN188638 vs. ExPASy Swiss-Prot
Match: COPB_MOUSE (Coatomer subunit beta OS=Mus musculus GN=Copb1 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.727e-25
Identity = 78/229 (34.06%), Postives = 122/229 (53.28%), Query Frame = 1
Query:   22 ALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEEGEDTDSSKKXXXXXXXXXXXXRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRE--SEELKAKAQISHAQPDDLIDFYHL 702
            ALWI+GEYC +  ++++ +  +++ LGE+P    SE  ++    K              +  V   GTYATQSA S    S PT  +       LR  LL GDFF+ A +A TLTK+ LR   +   + + N   ++A+L+M ++L LG+S +   PI +D  DRI +C+++L      +  I+ + CRQS  +MLS K   E  S++ +++ +    QPDD I F  L
Sbjct:  458 ALWILGEYCSTKEDIQSVMTEVRRSLGEIPIVE-SEIKKEAGELKPEEEITVGPV----QKLVTEMGTYATQSALSS---SRPTKKEEDRPP--LRGFLLDGDFFVAASLATTLTKIALRYVALVQEKKKQNSFVAEAMLLMATILHLGKSSLPKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSLSQMLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQL 676          
BLAST of CN188638 vs. ExPASy Swiss-Prot
Match: COPB_PONAB (Coatomer subunit beta OS=Pongo abelii GN=COPB1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.562e-25
Identity = 79/229 (34.50%), Postives = 121/229 (52.84%), Query Frame = 1
Query:   22 ALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEEGEDTDSSKKXXXXXXXXXXXXRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRE--SEELKAKAQISHAQPDDLIDFYHL 702
            ALWI+GEYC +  ++++ +  I++ LGE+P    SE  ++    K              +  V   GTYATQSA S    S PT  +       LR  LL GDFF+ A +A TLTK+ LR   +   + + N   ++A+L+M ++L LG+S +   PI +D  DRI +C+++L      +  I+ + CRQS   MLS K   E  S++ +++ +    QPDD I F  L
Sbjct:  458 ALWILGEYCSTKEDIQSVMTEIRRSLGEIPIVE-SEIKKEAGELKPEEEITVGPV----QKLVTEMGTYATQSALSS---SRPTKKEEDRPP--LRGFLLDGDFFVAASLATTLTKIALRYVALVQEKKKQNSFVAEAMLLMATILHLGKSSLPKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSLSHMLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQL 676          
BLAST of CN188638 vs. ExPASy Swiss-Prot
Match: COPB_HUMAN (Coatomer subunit beta OS=Homo sapiens GN=COPB1 PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 3.562e-25
Identity = 79/229 (34.50%), Postives = 121/229 (52.84%), Query Frame = 1
Query:   22 ALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEEGEDTDSSKKXXXXXXXXXXXXRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRE--SEELKAKAQISHAQPDDLIDFYHL 702
            ALWI+GEYC +  ++++ +  I++ LGE+P    SE  ++    K              +  V   GTYATQSA S    S PT  +       LR  LL GDFF+ A +A TLTK+ LR   +   + + N   ++A+L+M ++L LG+S +   PI +D  DRI +C+++L      +  I+ + CRQS   MLS K   E  S++ +++ +    QPDD I F  L
Sbjct:  458 ALWILGEYCSTKEDIQSVMTEIRRSLGEIPIVE-SEIKKEAGELKPEEEITVGPV----QKLVTEMGTYATQSALSS---SRPTKKEEDRPP--LRGFLLDGDFFVAASLATTLTKIALRYVALVQEKKKQNSFVAEAMLLMATILHLGKSSLPKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSLSHMLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQL 676          
BLAST of CN188638 vs. ExPASy Swiss-Prot
Match: COPB_CHICK (Coatomer subunit beta OS=Gallus gallus GN=COPB1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.562e-25
Identity = 78/229 (34.06%), Postives = 121/229 (52.84%), Query Frame = 1
Query:   22 ALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEEGEDTDSSKKXXXXXXXXXXXXRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRE--SEELKAKAQISHAQPDDLIDFYHL 702
            ALWI+GEYC +  ++++ +  +++ LGE+P    SE  ++    K              +  V   GTYATQSA S    S PT  +       LR  LL GDFF+ A +A TLTK+ LR   +   + + N   ++A+L+M ++L LG+S +   PI +D  DRI +C+++L      +  I+ + CRQS   MLS K   E  S++ +++ +    QPDD I F  L
Sbjct:  458 ALWILGEYCSTKEDIQSVMTEVRRSLGEIPIVE-SEIKKEAGELKPEEEVTVGPV----QKLVTEMGTYATQSALSS---SRPTKKEEDRPP--LRGFLLDGDFFVAASLATTLTKIALRYVSLVQEKKKQNSFIAEAMLLMATILHLGKSSLPKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSLSHMLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQL 676          
The following BLAST results are available for this feature:
BLAST of CN188638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
COPB1_ARATH9.179e-9876.29Coatomer subunit beta-1 OS=Arabidopsis thaliana GN... [more]
COPB1_ORYSJ2.261e-9674.68Coatomer subunit beta-1 OS=Oryza sativa subsp. jap... [more]
COPB2_ARATH2.953e-9675.43Coatomer subunit beta-2 OS=Arabidopsis thaliana GN... [more]
COPB2_ORYSJ1.791e-9372.96Coatomer subunit beta-2 OS=Oryza sativa subsp. jap... [more]
COPB_DROME7.177e-2633.20Coatomer subunit beta OS=Drosophila melanogaster G... [more]
COPB_RAT2.727e-2534.06Coatomer subunit beta OS=Rattus norvegicus GN=Copb... [more]
COPB_MOUSE2.727e-2534.06Coatomer subunit beta OS=Mus musculus GN=Copb1 PE=... [more]
COPB_PONAB3.562e-2534.50Coatomer subunit beta OS=Pongo abelii GN=COPB1 PE=... [more]
COPB_HUMAN3.562e-2534.50Coatomer subunit beta OS=Homo sapiens GN=COPB1 PE=... [more]
COPB_CHICK3.562e-2534.06Coatomer subunit beta OS=Gallus gallus GN=COPB1 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006H16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006H16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188638 ID=CN188638; Name=CN188638; organism=Citrus sinensis; type=EST; length=702bp
GATTTACGAGTGTGCACTTGCGCTCTTTGGATCATTGGAGAGTATTGCCA
GTCTCTTTCTGAAGTTGAGAATGGCATAGCAACCATTAAGCAGTGTCTTG
GAGAGTTGCCATTTTTCTCAGTCTCTGAAGAAGGGGAGGATACTGATTCT
TCTAAGAAAGTTCAGCAGCAAGCCAGCTCAACTACTGTTTCTTCCAGGAG
ACCAGCTGTTCTTGCTGATGGAACTTATGCTACTCAGAGTGCCGCCTCTG
AAACCGCTTTTTCCCCTCCTACCATTGTTCAGGGAACATTGACTTCTGGA
AATTTAAGATCCCTTCTTCTCACTGGTGATTTTTTCCTTGGGGCAGTTGT
GGCTTGCACACTGACAAAGCTTGTTTTGAGATTGGAGGAGGTGCAGCCAT
CTCGAGTTGAAGTGAATAAAGCATCCTCACAGGCCTTACTGATCATGGTC
TCAATGTTGCAATTAGGACAATCTCCAGTTCTGCCACACCCAATTGATAA
CGATTCTTTTGATAGGATTGTTGTGTGCATAAGATTGCTTTGCAATACTG
GTGATAATATCAGGAAGATATGGTTGCAGTCTTGCCGCCAGAGCTTTGTG
AAGATGCTTTCCGAGAAACAGTTAAGGGAATCTGAGGAATTAAAGGCAAA
GGCTCAGATTTCTCATGCACAGCCAGATGACCTTATTGACTTCTACCATC
TG
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