CN188638
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188638 vs. ExPASy Swiss-Prot
Match: COPB1_ARATH (Coatomer subunit beta-1 OS=Arabidopsis thaliana GN=At4g31480 PE=1 SV=2) HSP 1 Score: 356.295 bits (913), Expect = 9.179e-98 Identity = 177/232 (76.29%), Postives = 201/232 (86.64%), Query Frame = 1 Query: 7 RVCTCALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEEGEDTDSSKKXXXXXXXXXXXXRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRESEELKAKAQISHAQPDDLIDFYHL 702 +VC CALWIIGEYC SLSEVE+GI+TI QCLGELPF+SVSEE E T++SKK R+P +LADGTYATQSAASET FS PT+VQG+LTSGNLR+LLLTGDFFLGAVVACTLTKLVLRLEEVQ S+ EVNK +QALLIMVSMLQLGQSPV PHPIDNDS++RIV+CI+LLC+ D ++KIWL+SCRQSFVKM+SEKQLRE EELKAK Q +HAQPDDLIDF+HL Sbjct: 448 KVCPCALWIIGEYCLSLSEVESGISTITQCLGELPFYSVSEESEPTETSKKIQPTSSAMVSS-RKPVILADGTYATQSAASETTFSSPTVVQGSLTSGNLRALLLTGDFFLGAVVACTLTKLVLRLEEVQSSKTEVNKTVTQALLIMVSMLQLGQSPVSPHPIDNDSYERIVLCIKLLCHRNDEMKKIWLESCRQSFVKMISEKQLREMEELKAKTQTTHAQPDDLIDFFHL 678
BLAST of CN188638 vs. ExPASy Swiss-Prot
Match: COPB1_ORYSJ (Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica GN=Os11g0174000 PE=2 SV=1) HSP 1 Score: 351.673 bits (901), Expect = 2.261e-96 Identity = 174/233 (74.68%), Postives = 200/233 (85.84%), Query Frame = 1 Query: 7 RVCTCALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEEGEDTDSSKKXXXXXXXXXXXXRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSG-NLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRESEELKAKAQISHAQPDDLIDFYHL 702 RVC+CALWI+GEY SLSEVE+ I+TIKQCLG+LPF++VSEEGE TD+SK RRP VLADGTYATQSAA+ETA S P + G+L+S NLRSL+L+GDFFL AVVACTLTKLVLRLEEVQPS+ E NKAS+ ALLIMVS+LQLGQS LPHPIDNDS+DRIV+C+RLLCNTGD++RK+WLQSCRQSF KML+EKQ RE+EE+KAKAQISHAQPDDLIDFYHL Sbjct: 450 RVCSCALWILGEYSLSLSEVESAISTIKQCLGDLPFYTVSEEGESTDASKPAQPVVNSVTVSSRRPVVLADGTYATQSAATETAISSPAVAPGSLSSTQNLRSLILSGDFFLAAVVACTLTKLVLRLEEVQPSKAEANKASTGALLIMVSILQLGQSSYLPHPIDNDSYDRIVLCVRLLCNTGDDVRKVWLQSCRQSFTKMLAEKQFRETEEMKAKAQISHAQPDDLIDFYHL 682
BLAST of CN188638 vs. ExPASy Swiss-Prot
Match: COPB2_ARATH (Coatomer subunit beta-2 OS=Arabidopsis thaliana GN=At4g31490 PE=1 SV=2) HSP 1 Score: 351.288 bits (900), Expect = 2.953e-96 Identity = 175/232 (75.43%), Postives = 200/232 (86.21%), Query Frame = 1 Query: 7 RVCTCALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEEGEDTDSSKKXXXXXXXXXXXXRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRESEELKAKAQISHAQPDDLIDFYHL 702 +VC CALWIIGEYC SLSEVE+GI+TI QCLGELPF+SVSEE E T++SKK R+P +LADGTYATQSAASET FS PT+VQG+LTSGNLR+LLLTGDFFLGAVVACTLTKLVLRLEEVQ S+ EVNK SQALLIMVS+LQLGQSPV PHPIDNDS++RI++CI+LLC+ ++KIWL+SCRQSFVKM+SEKQLRE EELKAK Q +HAQPDDLIDF+HL Sbjct: 448 KVCPCALWIIGEYCLSLSEVESGISTITQCLGELPFYSVSEESEPTETSKKIQPTSSAMVSS-RKPVILADGTYATQSAASETTFSSPTVVQGSLTSGNLRALLLTGDFFLGAVVACTLTKLVLRLEEVQSSKTEVNKTVSQALLIMVSILQLGQSPVSPHPIDNDSYERIMLCIKLLCHRNVEMKKIWLESCRQSFVKMISEKQLREMEELKAKTQTTHAQPDDLIDFFHL 678
BLAST of CN188638 vs. ExPASy Swiss-Prot
Match: COPB2_ORYSJ (Coatomer subunit beta-2 OS=Oryza sativa subsp. japonica GN=Os01g0281400 PE=3 SV=1) HSP 1 Score: 342.043 bits (876), Expect = 1.791e-93 Identity = 170/233 (72.96%), Postives = 199/233 (85.41%), Query Frame = 1 Query: 7 RVCTCALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEEGEDTDSSKKXXXXXXXXXXXXRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSG-NLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRESEELKAKAQISHAQPDDLIDFYHL 702 RVC+CALWI+GEY SLSEVEN I+TIKQCLG++PF++VSEEGE TDS+K RRP VLADGTYATQSAA+E A S P++ G+L+S NLRSL+L+GDFFL AV++CTLTKLVLRLEEVQPS VEVNKA + ALL+M S+LQLGQS LPHPIDNDS+DRIV+C+RLLCNTGD++RK+WLQSCRQSF KML+EKQ RE+EE+KAKAQISHAQPDDLIDFYHL Sbjct: 449 RVCSCALWILGEYSLSLSEVENAISTIKQCLGDVPFYTVSEEGEATDSAKPAQPVVNSVTVSSRRPVVLADGTYATQSAATE-AISTPSVAPGSLSSTLNLRSLILSGDFFLAAVISCTLTKLVLRLEEVQPSMVEVNKACTGALLVMTSILQLGQSSYLPHPIDNDSYDRIVLCVRLLCNTGDDVRKVWLQSCRQSFAKMLAEKQFRETEEMKAKAQISHAQPDDLIDFYHL 680
BLAST of CN188638 vs. ExPASy Swiss-Prot
Match: COPB_DROME (Coatomer subunit beta OS=Drosophila melanogaster GN=betaCop PE=1 SV=2) HSP 1 Score: 117.472 bits (293), Expect = 7.177e-26 Identity = 83/250 (33.20%), Postives = 120/250 (48.00%), Query Frame = 1 Query: 7 RVCTCALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEE---GEDTDSSKKXXXXXXXXXXXXRRPA---------VLADGTYATQSAASETAFS-----PPTIVQGTLTSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRESEELKAKAQ-ISHAQPDDLIDFYHL 702 ++ A+WI+GEY + S++ IA I+Q LGE+P + G+ T+ K+ V +DGTYATQSA S + PP LR L+ GDFF+GA ++ TLTKL LR E++ N+ ++Q +LIM S+L LG+S PI ND DRI VC+R L ++ CR++ KML + + LK K + + QPDD + F L Sbjct: 450 KIHRAAVWILGEYVEG-SQILEVIAVIQQTLGEVPMVEAEQRRLAGDQTEEQKQQQGSAGGNAAGSAAEGSGSGNASNKVTSDGTYATQSAYSLAPVAKAEKRPP-----------LRQYLMDGDFFIGAALSATLTKLALRYAELETEARAQNRLTTQVMLIMSSILHLGKSGFPSKPITNDDTDRIFVCLRTLSERTPEAISVFTLYCREALGKMLDAQHDEDQRMLKEKQKATAKVQPDDPVLFAQL 687
BLAST of CN188638 vs. ExPASy Swiss-Prot
Match: COPB_RAT (Coatomer subunit beta OS=Rattus norvegicus GN=Copb1 PE=1 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.727e-25 Identity = 78/229 (34.06%), Postives = 122/229 (53.28%), Query Frame = 1 Query: 22 ALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEEGEDTDSSKKXXXXXXXXXXXXRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRE--SEELKAKAQISHAQPDDLIDFYHL 702 ALWI+GEYC + ++++ + +++ LGE+P SE ++ K + V GTYATQSA S S PT + LR LL GDFF+ A +A TLTK+ LR + + + N ++A+L+M ++L LG+S + PI +D DRI +C+++L + I+ + CRQS +MLS K E S++ +++ + QPDD I F L Sbjct: 458 ALWILGEYCSTKEDIQSVMTEVRRSLGEIPIVE-SEIKKEAGELKPEEEITVGPV----QKLVTEMGTYATQSALSS---SRPTKKEEDRPP--LRGFLLDGDFFVAASLATTLTKIALRYVALVQEKKKQNSFVAEAMLLMATILHLGKSSLPKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSLSQMLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQL 676
BLAST of CN188638 vs. ExPASy Swiss-Prot
Match: COPB_MOUSE (Coatomer subunit beta OS=Mus musculus GN=Copb1 PE=1 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.727e-25 Identity = 78/229 (34.06%), Postives = 122/229 (53.28%), Query Frame = 1 Query: 22 ALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEEGEDTDSSKKXXXXXXXXXXXXRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRE--SEELKAKAQISHAQPDDLIDFYHL 702 ALWI+GEYC + ++++ + +++ LGE+P SE ++ K + V GTYATQSA S S PT + LR LL GDFF+ A +A TLTK+ LR + + + N ++A+L+M ++L LG+S + PI +D DRI +C+++L + I+ + CRQS +MLS K E S++ +++ + QPDD I F L Sbjct: 458 ALWILGEYCSTKEDIQSVMTEVRRSLGEIPIVE-SEIKKEAGELKPEEEITVGPV----QKLVTEMGTYATQSALSS---SRPTKKEEDRPP--LRGFLLDGDFFVAASLATTLTKIALRYVALVQEKKKQNSFVAEAMLLMATILHLGKSSLPKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSLSQMLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQL 676
BLAST of CN188638 vs. ExPASy Swiss-Prot
Match: COPB_PONAB (Coatomer subunit beta OS=Pongo abelii GN=COPB1 PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.562e-25 Identity = 79/229 (34.50%), Postives = 121/229 (52.84%), Query Frame = 1 Query: 22 ALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEEGEDTDSSKKXXXXXXXXXXXXRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRE--SEELKAKAQISHAQPDDLIDFYHL 702 ALWI+GEYC + ++++ + I++ LGE+P SE ++ K + V GTYATQSA S S PT + LR LL GDFF+ A +A TLTK+ LR + + + N ++A+L+M ++L LG+S + PI +D DRI +C+++L + I+ + CRQS MLS K E S++ +++ + QPDD I F L Sbjct: 458 ALWILGEYCSTKEDIQSVMTEIRRSLGEIPIVE-SEIKKEAGELKPEEEITVGPV----QKLVTEMGTYATQSALSS---SRPTKKEEDRPP--LRGFLLDGDFFVAASLATTLTKIALRYVALVQEKKKQNSFVAEAMLLMATILHLGKSSLPKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSLSHMLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQL 676
BLAST of CN188638 vs. ExPASy Swiss-Prot
Match: COPB_HUMAN (Coatomer subunit beta OS=Homo sapiens GN=COPB1 PE=1 SV=3) HSP 1 Score: 115.161 bits (287), Expect = 3.562e-25 Identity = 79/229 (34.50%), Postives = 121/229 (52.84%), Query Frame = 1 Query: 22 ALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEEGEDTDSSKKXXXXXXXXXXXXRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRE--SEELKAKAQISHAQPDDLIDFYHL 702 ALWI+GEYC + ++++ + I++ LGE+P SE ++ K + V GTYATQSA S S PT + LR LL GDFF+ A +A TLTK+ LR + + + N ++A+L+M ++L LG+S + PI +D DRI +C+++L + I+ + CRQS MLS K E S++ +++ + QPDD I F L Sbjct: 458 ALWILGEYCSTKEDIQSVMTEIRRSLGEIPIVE-SEIKKEAGELKPEEEITVGPV----QKLVTEMGTYATQSALSS---SRPTKKEEDRPP--LRGFLLDGDFFVAASLATTLTKIALRYVALVQEKKKQNSFVAEAMLLMATILHLGKSSLPKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSLSHMLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQL 676
BLAST of CN188638 vs. ExPASy Swiss-Prot
Match: COPB_CHICK (Coatomer subunit beta OS=Gallus gallus GN=COPB1 PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 3.562e-25 Identity = 78/229 (34.06%), Postives = 121/229 (52.84%), Query Frame = 1 Query: 22 ALWIIGEYCQSLSEVENGIATIKQCLGELPFFSVSEEGEDTDSSKKXXXXXXXXXXXXRRPAVLADGTYATQSAASETAFSPPTIVQGTLTSGNLRSLLLTGDFFLGAVVACTLTKLVLRLEEVQPSRVEVNKASSQALLIMVSMLQLGQSPVLPHPIDNDSFDRIVVCIRLLCNTGDNIRKIWLQSCRQSFVKMLSEKQLRE--SEELKAKAQISHAQPDDLIDFYHL 702 ALWI+GEYC + ++++ + +++ LGE+P SE ++ K + V GTYATQSA S S PT + LR LL GDFF+ A +A TLTK+ LR + + + N ++A+L+M ++L LG+S + PI +D DRI +C+++L + I+ + CRQS MLS K E S++ +++ + QPDD I F L Sbjct: 458 ALWILGEYCSTKEDIQSVMTEVRRSLGEIPIVE-SEIKKEAGELKPEEEVTVGPV----QKLVTEMGTYATQSALSS---SRPTKKEEDRPP--LRGFLLDGDFFVAASLATTLTKIALRYVSLVQEKKKQNSFIAEAMLLMATILHLGKSSLPKKPITDDDVDRISLCLKVLSECSPLMNDIFNKECRQSLSHMLSAKLEEEKLSQKKESEKRNVTVQPDDPISFMQL 676 The following BLAST results are available for this feature:
BLAST of CN188638 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN188638 ID=CN188638; Name=CN188638; organism=Citrus sinensis; type=EST; length=702bpback to top |